ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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Clone |
Length |
Accession No. |
nt | uniprot | TIGR-ORF | RAP-ORF | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | |||
| basdg14 | 509 | AV925937 | full | emb|AJ224325.1|HVH224325 Hordeum vulgare cv. Haisa mRNA for cp33Hv protein Length = 1311 | 298 | not_full | ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor Length = 324 | 175 | -- | --- | - | -- | --- | - |
| basdg12 | 424 | AV925936 | not_full | gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 | 500 | not_full | CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase) (Choline acetylase) (ChAT) Length = 748 | 7 | -- | --- | - | -- | --- | - |
| basdg10 | 466 | AV925935 | not_full | ref|NM_185419.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2131 | 81 | not_full | RUBB_ARATH (P21240) RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) Length = 600 | 500 | -- | --- | - | -- | --- | - |
| basdg09 | 610 | AV925934 | not_full | dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 | 84 | -- | --- | 0 | -- | --- | - | -- | --- | - |
| basdg08 | 459 | AV925933 | not_full | gb|AY112372.1| Zea mays CL6272_1 mRNA sequence Length = 1354 | 67 | not_full | ATOX1_CANFA (Q9TT99) Copper transport protein ATOX1 (Metal transport protein ATX1) Length = 68 | 77 | -- | --- | - | -- | --- | - |
| basdg07 | 357 | AV925932 | not_full | dbj|AB063117.1| Hordeum vulgare HvAPX1 mRNA for peroxisome type ascorbate peroxidase, complete cds Length = 1089 | 81 | not_full | APX4_ORYSA (Q6ZJJ1) Putative L-ascorbate peroxidase 4 (EC 1.11.1.11) Length = 291 | 93 | -- | --- | - | -- | --- | - |
| basdg06 | 449 | AV925931 | not_full | ref|XM_507218.1| PREDICTED Oryza sativa (japonica cultivar-group), P0434E03.16-1 mRNA Length = 1790 | 67 | not_full | CG69_HUMAN (Q9BZJ4) Mitochondrial carrier protein CGI-69 Length = 359 | 165 | -- | --- | - | -- | --- | - |
| basdg05 | 460 | AV836581 | not_full | gb|AY494984.1| Triticum aestivum LON1 protease mRNA, complete cds Length = 3143 | 57 | not_full | LONH1_MAIZE (P93647) Lon protease homolog 1, mitochondrial precursor (EC 3.4.21.-) Length = 885 | 500 | -- | --- | - | -- | --- | - |
| basdg04 | 518 | AV925930 | not_full | ref|XM_481014.1| Oryza sativa (japonica cultivar-group), mRNA Length = 750 | 428 | not_full | YG4B_YEAST (P46951) Hypothetical 95.4 kDa protein in SNG1-PMT6 intergenic region Length = 817 | 5 | -- | --- | - | -- | --- | - |
| basdg03 | 579 | AV925929 | not_full | ref|XM_481014.1| Oryza sativa (japonica cultivar-group), mRNA Length = 750 | 432 | not_full | YG4B_YEAST (P46951) Hypothetical 95.4 kDa protein in SNG1-PMT6 intergenic region Length = 817 | 3 | -- | --- | - | -- | --- | - |
| basdg01 | 477 | AV925928 | not_full | emb|AJ224325.1|HVH224325 Hordeum vulgare cv. Haisa mRNA for cp33Hv protein Length = 1311 | 317 | not_full | ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor Length = 324 | 301 | -- | --- | - | -- | --- | - |
| basdf24 | 525 | AV925927 | full | gb|BT009603.1| Triticum aestivum clone wre1n.pk0081.a4:fis, full insert mRNA sequence Length = 1322 | 210 | full | PP1_MAIZE (P22198) Serine/threonine-protein phosphatase PP1 (EC 3.1.3.16) Length = 316 | 143 | -- | --- | - | -- | --- | - |
| basdf23 | 384 | AV925926 | not_full | gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 | 500 | not_full | ZN580_MOUSE (Q9DB38) Zinc finger protein 580 Length = 172 | 24 | -- | --- | - | -- | --- | - |
| basdf22 | 348 | AV925925 | not_full | gb|BT016384.1| Zea mays clone Contig217 mRNA sequence Length = 696 | 92 | not_full | RL27A_OSCBR (O01358) 60S ribosomal protein L27a (Ribosomal protein RPL-27) Length = 145 | 27 | -- | --- | - | -- | --- | - |
| basdf21 | 369 | AV925924 | not_full | ref|XM_468609.1| Oryza sativa (japonica cultivar-group), mRNA Length = 694 | 92 | not_full | RL27A_OSCBR (O01358) 60S ribosomal protein L27a (Ribosomal protein RPL-27) Length = 145 | 27 | -- | --- | - | -- | --- | - |
| basdf20 | 614 | AV925923 | not_full | ref|XM_464920.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2793 | 59 | not_full | MFP_ORYSA (Q8W1L6) Peroxisomal fatty acid beta-oxidation multifunctional protein (MFP) [Includes: Enoyl-CoA hydratase (EC 4.2.1.17); 3-2-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3); 3-hydroxyacyl-CoA dehydrogenase L | 136 | -- | --- | - | -- | --- | - |
| basdf18 | 485 | AV836580 | not_full | ref|NM_194963.1| Oryza sativa (japonica cultivar-group) putative alcohol dehydrogenase (OSJNBa0050E08.9), mRNA Length = 1014 | 402 | full | ADH2_LYCES (P28032) Alcohol dehydrogenase 2 (EC 1.1.1.1) Length = 380 | 209 | -- | --- | - | -- | --- | - |
| basdf17 | 480 | AV925922 | not_full | ref|XM_464102.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3311 | 68 | not_full | GAL1_VIBCH (Q9KRP1) Galactokinase (EC 2.7.1.6) (Galactose kinase) Length = 386 | 105 | -- | --- | - | -- | --- | - |
| basdf16 | 503 | AV925921 | not_full | emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9 Length = 875 | 399 | full | RBS_HORVU (Q40004) Ribulose bisphosphate carboxylase small chain, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 174 | 167 | -- | --- | - | -- | --- | - |
| basdf15 | 537 | AV925920 | not_full | emb|AJ000242.1|HVJ000242 Hordeum vulgare mRNA for expressed sequence tag Length = 774 | 37 | not_full | CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) Length = 449 | 16 | -- | --- | - | -- | --- | - |
| basdf14 | 334 | AV925919 | not_full | gb|AY220736.1| Hordeum vulgare pathogen induced protein 2-4 (PI2-4) mRNA, complete cds Length = 842 | 62 | not_full | CANA_DROME (Q11002) Calpain A (EC 3.4.22.-) (Calcium-activated neutral proteinase A) (CANP A) [Contains: Calpain A catalytic subunit] Length = 828 | 6 | -- | --- | - | -- | --- | - |
| basdf12 | 521 | AV925918 | not_full | gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) mRNA, complete cds Length = 869 | 500 | not_full | CYPH_MAIZE (P21569) Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) Length = 172 | 208 | -- | --- | - | -- | --- | - |
| basdf11 | 388 | AV925917 | not_full | gb|AF009675.1|AF009675 Hordeum vulgare var. distichum soluble inorganic pyrophosphatase (Ipp) mRNA, complete cds Length = 1035 | 115 | not_full | IPYR_MAIZE (O48556) Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase) (PPase) Length = 214 | 108 | -- | --- | - | -- | --- | - |
| basdf10 | 544 | AV925916 | not_full | emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for S-adenosylmethionine decarboxylase Length = 1893 | 107 | not_full | DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 393 | 35 | -- | --- | - | -- | --- | - |
| basdf09 | 602 | AV925915 | not_full | gb|AY104474.1| Zea mays PCO112790 mRNA sequence Length = 2008 | 34 | not_full | IF5_MAIZE (P55876) Eukaryotic translation initiation factor 5 (eIF-5) Length = 451 | 21 | -- | --- | - | -- | --- | - |
| basdf08 | 604 | AV925914 | not_full | ref|XM_465282.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1517 | 378 | not_full | PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog Length = 413 | 275 | -- | --- | - | -- | --- | - |
| basdf07 | 521 | AV925913 | not_full | gb|AY107574.1| Zea mays PCO137295 mRNA sequence Length = 719 | 107 | not_full | FAF_DROME (P55824) Probable ubiquitin carboxyl-terminal hydrolase FAF (EC 3.1.2.15) (Ubiquitin thioesterase FAF) (Ubiquitin specific-processing protease FAF) (Deubiquitinating enzyme FAF) (Protein fat facets) Length = 2778 | 13 | -- | --- | - | -- | --- | - |
| basdf06 | 474 | AV925912 | not_full | ref|XM_464885.1| Oryza sativa (japonica cultivar-group), mRNA Length = 919 | 129 | not_full | RK21_ARATH (P51412) 50S ribosomal protein L21, chloroplast precursor (CL21) Length = 220 | 13 | -- | --- | - | -- | --- | - |
| basdf05 | 442 | AV836579 | not_full | ref|XM_479828.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2362 | 47 | not_full | IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34 (eIF-(iso)4F p82-34) Length = 788 | 16 | -- | --- | - | -- | --- | - |
| basdf02 | 333 | AV925911 | not_full | gb|AY220736.1| Hordeum vulgare pathogen induced protein 2-4 (PI2-4) mRNA, complete cds Length = 842 | 63 | not_full | CANA_DROME (Q11002) Calpain A (EC 3.4.22.-) (Calcium-activated neutral proteinase A) (CANP A) [Contains: Calpain A catalytic subunit] Length = 828 | 5 | -- | --- | - | -- | --- | - |
| basde22 | 517 | AV925910 | not_full | gb|AY105531.1| Zea mays PCO113958 mRNA sequence Length = 1217 | 86 | full | UCRI_MAIZE (P49727) Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 273 | 18 | -- | --- | - | -- | --- | - |
| basde20 | 600 | AV925909 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 2 | -- | --- | - | -- | --- | - |
| basde19 | 562 | AV925908 | not_full | dbj|AK069911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038A05, full insert sequence Length = 1616 | 59 | not_full | ACLY_RAT (P16638) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1100 | 67 | -- | --- | - | -- | --- | - |
| basde18 | 510 | AV836578 | not_full | dbj|AB030708.1| Triticum aestivum gene for AHM1, complete cds Length = 3846 | 60 | not_full | ZN678_HUMAN (Q5SXM1) Zinc finger protein 678 Length = 525 | 5 | -- | --- | - | -- | --- | - |
| basde17 | 502 | AV925907 | not_full | gb|AY105417.1| Zea mays PCO109699 mRNA sequence Length = 1103 | 131 | full | RL7A_ORYSA (P35685) 60S ribosomal protein L7a Length = 258 | 29 | -- | --- | - | -- | --- | - |
| basde16 | 689 | AV925906 | not_full | gb|AY137456.1| Hordeum vulgare subsp. vulgare ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, complete cds; chloroplast gene for chloroplast product Length = 1589 | 500 | not_full | RBL_WHEAT (P11383) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) Length = 477 | 500 | -- | --- | - | -- | --- | - |
| basde14 | 636 | AV925905 | not_full | emb|AJ131737.1|SCE131737 Secale cereale mRNA for hypothetical protein, clone 5 Length = 845 | 417 | not_full | RBS2_WHEAT (P26667) Ribulose bisphosphate carboxylase small chain PW9, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit PW9) Length = 175 | 160 | -- | --- | - | -- | --- | - |
| basde13 | 666 | AV925904 | not_full | gb|AF307145.1| Hordeum vulgare subsp. vulgare glutamine-dependent asparagine synthetase 1 mRNA, complete cds Length = 1973 | 207 | not_full | ASNS_SANAU (O24338) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 524 | 37 | -- | --- | - | -- | --- | - |
| basde12 | 514 | AV925903 | not_full | ref|NM_197133.1| Oryza sativa (japonica cultivar-group) putative chloroplast inner envelope protein (OSJNBa0051D19.7), mRNA Length = 2967 | 49 | not_full | TRMU_PSESM (Q87ZR6) Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 376 | 6 | -- | --- | - | -- | --- | - |
| basde09 | 537 | AV925902 | not_full | dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D10, full insert sequence Length = 1173 | 38 | not_full | SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase (EC 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3223 | 44 | -- | --- | - | -- | --- | - |
| basde08 | 662 | AV925901 | not_full | ref|NM_194849.1| Oryza sativa (japonica cultivar-group) putative proline-rich protein (OSJNBb0016M10.7), mRNA Length = 816 | 118 | not_full | ZIPA_SALTY (P0A2N6) Cell division protein zipA homolog Length = 328 | 3 | -- | --- | - | -- | --- | - |
| basde06 | 247 | AV925900 | not_full | gb|AY691636.1| Australopyrum calcis subsp. calcis ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; chloroplast Length = 1347 | 500 | not_full | RBL_WHEAT (P11383) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) Length = 477 | 500 | -- | --- | - | -- | --- | - |
| basde05 | 480 | AV925899 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basde04 | 569 | AV925898 | not_full | emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clone DB4) Length = 637 | 44 | full | THN3_HORVU (P08772) Leaf-specific thionin DB4 precursor [Contains: Leaf-specific thionin DB4; Acidic protein] Length = 137 | 39 | -- | --- | - | -- | --- | - |
| basde03 | 573 | AV925897 | full | gb|AY206371.1| Triticum aestivum photosystem II polypeptide mRNA, partial cds; nuclear gene for chloroplast product Length = 481 | 347 | not_full | PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor Length = 140 | 17 | -- | --- | - | -- | --- | - |
| basde02 | 519 | AV925896 | not_full | dbj|AK068826.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164I23, full insert sequence Length = 2434 | 91 | not_full | GFRA4_HUMAN (Q9GZZ7) GDNF family receptor alpha-4 precursor (GFR-alpha-4) (Persephin receptor) Length = 299 | 15 | -- | --- | - | -- | --- | - |
| basde01 | 598 | AV925895 | not_full | emb|AL929441.37| Mouse DNA sequence from clone RP23-418E20 on chromosome 4, complete sequence Length = 202920 | 97 | not_full | PPE01_MYCTU (Q10892) Hypothetical PPE-family protein PPE1 Length = 463 | 19 | -- | --- | - | -- | --- | - |
| basdd24 | 438 | AV836577 | not_full | gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 | 500 | not_full | ZNF28_HUMAN (P17035) Zinc finger protein 28 (Zinc finger protein KOX24) Length = 665 | 166 | -- | --- | - | -- | --- | - |
| basdd23 | 395 | AV836576 | not_full | gb|AF509748.1| Hordeum vulgare subsp. vulgare Morex barley stem rust resistance protein (Rpg1) gene, complete cds Length = 17974 | 73 | not_full | CLAT_RAT (P32738) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase) (Choline acetylase) (ChAT) Length = 639 | 6 | -- | --- | - | -- | --- | - |
| basdd21 | 212 | AV925894 | not_full | gb|AY206371.1| Triticum aestivum photosystem II polypeptide mRNA, partial cds; nuclear gene for chloroplast product Length = 481 | 24 | not_full | PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor Length = 140 | 7 | -- | --- | - | -- | --- | - |
