ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdf09 |
|---|---|
| Clone Library Name | barley_pub |
>IF5_MAIZE (P55876) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 451 Score = 152 bits (385), Expect = 6e-37 Identities = 73/76 (96%), Positives = 76/76 (100%) Frame = +2 Query: 374 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 553 MALQNIGASN+DDAFYRYKMPRM+TKIEGRGNGIKTN+VNMVDIAKALARPASYTTKYFG Sbjct: 1 MALQNIGASNRDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFG 60 Query: 554 CELGAQSKFDEKTGIS 601 CELGAQSKFDEKTGIS Sbjct: 61 CELGAQSKFDEKTGIS 76
>IF5_PHAVU (P48724) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 443 Score = 146 bits (368), Expect = 5e-35 Identities = 70/76 (92%), Positives = 72/76 (94%) Frame = +2 Query: 374 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 553 MALQNIGA N DDAFYRYKMPRM+TKIEGRGNGIKTN+VNMVDIAK LARPASYTTKYFG Sbjct: 1 MALQNIGAGNSDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVDIAKRLARPASYTTKYFG 60 Query: 554 CELGAQSKFDEKTGIS 601 CELGAQSKFDEKTG S Sbjct: 61 CELGAQSKFDEKTGTS 76
>IF5Y_ARATH (Q9C8F1) Probable eukaryotic translation initiation factor 5-1| (eIF-5 1) Length = 439 Score = 144 bits (364), Expect = 1e-34 Identities = 68/76 (89%), Positives = 73/76 (96%) Frame = +2 Query: 374 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 553 MALQNIGASN+DDAFYRYKMPRM+TKIEGRGNGIKTN+VNMV+IAKAL RPA+YTTKYFG Sbjct: 1 MALQNIGASNRDDAFYRYKMPRMMTKIEGRGNGIKTNVVNMVEIAKALGRPAAYTTKYFG 60 Query: 554 CELGAQSKFDEKTGIS 601 CELGAQSKFDEK G S Sbjct: 61 CELGAQSKFDEKNGTS 76
>IF5Z_ARATH (Q9S825) Probable eukaryotic translation initiation factor 5-2| (eIF-5 2) Length = 437 Score = 138 bits (347), Expect = 1e-32 Identities = 65/76 (85%), Positives = 72/76 (94%) Frame = +2 Query: 374 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 553 MALQNIGASN++DAFYRYKMP+M+TK EG+GNGIKTNI+N V+IAKALARP SYTTKYFG Sbjct: 1 MALQNIGASNRNDAFYRYKMPKMVTKTEGKGNGIKTNIINNVEIAKALARPPSYTTKYFG 60 Query: 554 CELGAQSKFDEKTGIS 601 CELGAQSKFDEKTG S Sbjct: 61 CELGAQSKFDEKTGTS 76
>IF5_HUMAN (P55010) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 431 Score = 100 bits (250), Expect = 2e-21 Identities = 45/60 (75%), Positives = 53/60 (88%) Frame = +2 Query: 410 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 589 D FYRYKMPR++ K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K Sbjct: 11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK 70
>IF5_RAT (Q07205) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 429 Score = 100 bits (250), Expect = 2e-21 Identities = 45/60 (75%), Positives = 53/60 (88%) Frame = +2 Query: 410 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 589 D FYRYKMPR++ K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K Sbjct: 11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK 70
>IF5_MOUSE (P59325) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 429 Score = 100 bits (250), Expect = 2e-21 Identities = 45/60 (75%), Positives = 53/60 (88%) Frame = +2 Query: 410 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 589 D FYRYKMPR++ K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K Sbjct: 11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK 70
>IF5_DROME (Q9VXK6) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 464 Score = 97.1 bits (240), Expect = 4e-20 Identities = 45/72 (62%), Positives = 56/72 (77%) Frame = +2 Query: 374 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 553 MA N+ S D FYRYKMPR+ K+EG+GNGIKT +VNM ++A+A+ RPA+Y TKYFG Sbjct: 1 MATVNVNRS-VTDIFYRYKMPRLQAKVEGKGNGIKTVLVNMAEVARAIGRPATYPTKYFG 59 Query: 554 CELGAQSKFDEK 589 CELGAQ+ FD K Sbjct: 60 CELGAQTLFDHK 71
>IF5_CAEEL (Q22918) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 436 Score = 92.0 bits (227), Expect = 1e-18 Identities = 42/60 (70%), Positives = 48/60 (80%) Frame = +2 Query: 410 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 589 D FYRYKMP++ K+EG+GNGIKT I NM +IAKAL RP Y TKYFGCELGAQ+ FD K Sbjct: 11 DPFYRYKMPKLSAKVEGKGNGIKTVISNMSEIAKALERPPMYPTKYFGCELGAQTNFDAK 70
>IF5_SCHPO (Q09689) Probable eukaryotic translation initiation factor 5| (eIF-5) Length = 395 Score = 83.2 bits (204), Expect = 5e-16 Identities = 43/67 (64%), Positives = 51/67 (76%) Frame = +2 Query: 374 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 553 MA NI KD +FYRY+MP++ +KIEG+GNGIKT I NM DIAKAL RP Y TK+FG Sbjct: 1 MATINIRRDVKD-SFYRYRMPKLQSKIEGKGNGIKTVIPNMSDIAKALGRPPLYVTKFFG 59 Query: 554 CELGAQS 574 ELGAQ+ Sbjct: 60 FELGAQT 66
>IF5_YEAST (P38431) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 405 Score = 79.0 bits (193), Expect = 1e-14 Identities = 36/55 (65%), Positives = 43/55 (78%) Frame = +2 Query: 410 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQS 574 D FYRYKMP + K+EGRGNGIKT ++N+ DI+ AL RPA Y KYFG ELGAQ+ Sbjct: 11 DPFYRYKMPPIQAKVEGRGNGIKTAVLNVADISHALNRPAPYIVKYFGFELGAQT 65
>IF2B_METKA (Q8TWR5) Translation initiation factor 2 beta subunit (eIF-2-beta)| (aIF2-beta) Length = 138 Score = 34.3 bits (77), Expect = 0.29 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = +2 Query: 422 RYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFD 583 R++MP+ +EG+ T I N +I+K L R + TKYF ELG D Sbjct: 26 RFEMPKPKVSVEGK----TTVIRNFKEISKKLDRDPEHITKYFLKELGTAGHVD 75
>GLNA_BUTFI (Q05650) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 700 Score = 32.0 bits (71), Expect = 1.4 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -1 Query: 584 HQTLIVPQAHTQSTWLCRKLAWQVLLLCQPCSQYWS*CH 468 H + I P +S+W ++ +W L SQ+WS CH Sbjct: 83 HDSFISPTEDGRSSWSSQEKSWLRANLMHQASQWWSSCH 121
>RBSA_HAEIN (P44735) Ribose transport ATP-binding protein rbsA (EC 3.6.3.17)| Length = 493 Score = 30.0 bits (66), Expect = 5.4 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = -2 Query: 520 GKCFCYVNHVHNIGLDAITTSFNFGQHSGHLVPVEGIILVGSTNV 386 G+C V HV G+D + +F H+G +V V G++ G T + Sbjct: 254 GECVLDVKHVSGSGIDDV----SFKLHAGEIVGVSGLMGAGRTEL 294
>NU1M_TOLMA (Q70Y23) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 29.6 bits (65), Expect = 7.0 Identities = 31/112 (27%), Positives = 50/112 (44%) Frame = -3 Query: 522 LASAFAMSTMFTILVLMPLPRPSILVSILGILYL*KASSLLEAPMFCSAILRKSFCRRCR 343 LA A S ++ + MP+P P I ++ LG+L++ SSL + S S Sbjct: 73 LAPMLAFSLALSMWIPMPMPHPLIHLN-LGVLFILALSSLAVYSILWSGWASNS------ 125 Query: 342 QMWQISEAIIAAGRWL*AQAVSSELSEPENLMGS*CMQGSTNLCLFLVAREY 187 A+I A R + AQ +S E++ L+ + M GS L +E+ Sbjct: 126 -----KYALIGALRAV-AQTISYEVTLAIILLSTMMMNGSFTLSTLTTTQEH 171
>MOAB_STAES (Q8CMK6) Molybdenum cofactor biosynthesis protein B| Length = 176 Score = 29.6 bits (65), Expect = 7.0 Identities = 16/59 (27%), Positives = 31/59 (52%) Frame = -2 Query: 520 GKCFCYVNHVHNIGLDAITTSFNFGQHSGHLVPVEGIILVGSTNVLQRHLEKILLPQMS 344 G+ F Y+++ ++G A+ T G L+ L GST ++ +EK++ P++S Sbjct: 110 GELFRYLSYTEDVGTRALLTRAIAGTCDSTLI----FALPGSTGAIKLAIEKLIKPELS 164
>MOAB_STAEQ (Q5HLX4) Molybdenum cofactor biosynthesis protein B| Length = 176 Score = 29.6 bits (65), Expect = 7.0 Identities = 16/59 (27%), Positives = 31/59 (52%) Frame = -2 Query: 520 GKCFCYVNHVHNIGLDAITTSFNFGQHSGHLVPVEGIILVGSTNVLQRHLEKILLPQMS 344 G+ F Y+++ ++G A+ T G L+ L GST ++ +EK++ P++S Sbjct: 110 GELFRYLSYTEDVGTRALLTRAIAGTCDSTLI----FALPGSTGAIKLAIEKLIKPELS 164
>Y023_MYCTU (P67704) Putative HTH-type transcriptional regulator Rv0023/MT0026| Length = 256 Score = 29.3 bits (64), Expect = 9.2 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Frame = +2 Query: 86 SVLLQSDKVEGYAEPSFMSEQASVYLG--SVGLLGEYSRATRKRHKFVLPCMHQEPIRFS 259 SV+ Q K E A S+ + +V G S G L E+ RA +L M P S Sbjct: 140 SVIAQCVKAEMLAASSW---RVAVNAGADSTGRLMEHLRALEATRGALLERM---PTSLS 193 Query: 260 GSESSLDTACAQSHLPAAIIASEI 331 + D ACAQS LP A++A+ I Sbjct: 194 ---ARFDRACAQSSLPEAVVAALI 214
>Y023_MYCBO (P67705) Putative HTH-type transcriptional regulator Mb0023| Length = 256 Score = 29.3 bits (64), Expect = 9.2 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Frame = +2 Query: 86 SVLLQSDKVEGYAEPSFMSEQASVYLG--SVGLLGEYSRATRKRHKFVLPCMHQEPIRFS 259 SV+ Q K E A S+ + +V G S G L E+ RA +L M P S Sbjct: 140 SVIAQCVKAEMLAASSW---RVAVNAGADSTGRLMEHLRALEATRGALLERM---PTSLS 193 Query: 260 GSESSLDTACAQSHLPAAIIASEI 331 + D ACAQS LP A++A+ I Sbjct: 194 ---ARFDRACAQSSLPEAVVAALI 214
>NU1M_TAMSI (O78698) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 29.3 bits (64), Expect = 9.2 Identities = 14/40 (35%), Positives = 28/40 (70%) Frame = -3 Query: 522 LASAFAMSTMFTILVLMPLPRPSILVSILGILYL*KASSL 403 +A + A++ FT+ + +P+P+P I ++ +GIL++ SSL Sbjct: 73 IAPSLALTLAFTMWIPLPMPQPLINMN-MGILFILATSSL 111
>LEU3_SYMTH (Q67JY2) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 368 Score = 29.3 bits (64), Expect = 9.2 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = +2 Query: 134 FMSEQASVYLGSVGLLGEYSRATRKRHKFVLPCMHQEPIRFSGSE 268 F+S++A++ GS+GLL S R++F LP EPI S + Sbjct: 253 FLSDEAAMLTGSIGLLPSASLGA-ARNRFGLPKGFYEPIHGSAPD 296 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,028,147 Number of Sequences: 219361 Number of extensions: 1775544 Number of successful extensions: 4437 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4333 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4436 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
