ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdf09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF5_MAIZE (P55876) Eukaryotic translation initiation factor 5 (e... 152 6e-37
2IF5_PHAVU (P48724) Eukaryotic translation initiation factor 5 (e... 146 5e-35
3IF5Y_ARATH (Q9C8F1) Probable eukaryotic translation initiation f... 144 1e-34
4IF5Z_ARATH (Q9S825) Probable eukaryotic translation initiation f... 138 1e-32
5IF5_HUMAN (P55010) Eukaryotic translation initiation factor 5 (e... 100 2e-21
6IF5_RAT (Q07205) Eukaryotic translation initiation factor 5 (eIF-5) 100 2e-21
7IF5_MOUSE (P59325) Eukaryotic translation initiation factor 5 (e... 100 2e-21
8IF5_DROME (Q9VXK6) Eukaryotic translation initiation factor 5 (e... 97 4e-20
9IF5_CAEEL (Q22918) Eukaryotic translation initiation factor 5 (e... 92 1e-18
10IF5_SCHPO (Q09689) Probable eukaryotic translation initiation fa... 83 5e-16
11IF5_YEAST (P38431) Eukaryotic translation initiation factor 5 (e... 79 1e-14
12IF2B_METKA (Q8TWR5) Translation initiation factor 2 beta subunit... 34 0.29
13GLNA_BUTFI (Q05650) Glutamine synthetase (EC 6.3.1.2) (Glutamate... 32 1.4
14RBSA_HAEIN (P44735) Ribose transport ATP-binding protein rbsA (E... 30 5.4
15NU1M_TOLMA (Q70Y23) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 30 7.0
16MOAB_STAES (Q8CMK6) Molybdenum cofactor biosynthesis protein B 30 7.0
17MOAB_STAEQ (Q5HLX4) Molybdenum cofactor biosynthesis protein B 30 7.0
18Y023_MYCTU (P67704) Putative HTH-type transcriptional regulator ... 29 9.2
19Y023_MYCBO (P67705) Putative HTH-type transcriptional regulator ... 29 9.2
20NU1M_TAMSI (O78698) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 29 9.2
21LEU3_SYMTH (Q67JY2) 3-isopropylmalate dehydrogenase (EC 1.1.1.85... 29 9.2

>IF5_MAIZE (P55876) Eukaryotic translation initiation factor 5 (eIF-5)|
          Length = 451

 Score =  152 bits (385), Expect = 6e-37
 Identities = 73/76 (96%), Positives = 76/76 (100%)
 Frame = +2

Query: 374 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 553
           MALQNIGASN+DDAFYRYKMPRM+TKIEGRGNGIKTN+VNMVDIAKALARPASYTTKYFG
Sbjct: 1   MALQNIGASNRDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFG 60

Query: 554 CELGAQSKFDEKTGIS 601
           CELGAQSKFDEKTGIS
Sbjct: 61  CELGAQSKFDEKTGIS 76



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>IF5_PHAVU (P48724) Eukaryotic translation initiation factor 5 (eIF-5)|
          Length = 443

 Score =  146 bits (368), Expect = 5e-35
 Identities = 70/76 (92%), Positives = 72/76 (94%)
 Frame = +2

Query: 374 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 553
           MALQNIGA N DDAFYRYKMPRM+TKIEGRGNGIKTN+VNMVDIAK LARPASYTTKYFG
Sbjct: 1   MALQNIGAGNSDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVDIAKRLARPASYTTKYFG 60

Query: 554 CELGAQSKFDEKTGIS 601
           CELGAQSKFDEKTG S
Sbjct: 61  CELGAQSKFDEKTGTS 76



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>IF5Y_ARATH (Q9C8F1) Probable eukaryotic translation initiation factor 5-1|
           (eIF-5 1)
          Length = 439

 Score =  144 bits (364), Expect = 1e-34
 Identities = 68/76 (89%), Positives = 73/76 (96%)
 Frame = +2

Query: 374 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 553
           MALQNIGASN+DDAFYRYKMPRM+TKIEGRGNGIKTN+VNMV+IAKAL RPA+YTTKYFG
Sbjct: 1   MALQNIGASNRDDAFYRYKMPRMMTKIEGRGNGIKTNVVNMVEIAKALGRPAAYTTKYFG 60

Query: 554 CELGAQSKFDEKTGIS 601
           CELGAQSKFDEK G S
Sbjct: 61  CELGAQSKFDEKNGTS 76



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>IF5Z_ARATH (Q9S825) Probable eukaryotic translation initiation factor 5-2|
           (eIF-5 2)
          Length = 437

 Score =  138 bits (347), Expect = 1e-32
 Identities = 65/76 (85%), Positives = 72/76 (94%)
 Frame = +2

Query: 374 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 553
           MALQNIGASN++DAFYRYKMP+M+TK EG+GNGIKTNI+N V+IAKALARP SYTTKYFG
Sbjct: 1   MALQNIGASNRNDAFYRYKMPKMVTKTEGKGNGIKTNIINNVEIAKALARPPSYTTKYFG 60

Query: 554 CELGAQSKFDEKTGIS 601
           CELGAQSKFDEKTG S
Sbjct: 61  CELGAQSKFDEKTGTS 76



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>IF5_HUMAN (P55010) Eukaryotic translation initiation factor 5 (eIF-5)|
          Length = 431

 Score =  100 bits (250), Expect = 2e-21
 Identities = 45/60 (75%), Positives = 53/60 (88%)
 Frame = +2

Query: 410 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 589
           D FYRYKMPR++ K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K
Sbjct: 11  DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK 70



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>IF5_RAT (Q07205) Eukaryotic translation initiation factor 5 (eIF-5)|
          Length = 429

 Score =  100 bits (250), Expect = 2e-21
 Identities = 45/60 (75%), Positives = 53/60 (88%)
 Frame = +2

Query: 410 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 589
           D FYRYKMPR++ K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K
Sbjct: 11  DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK 70



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>IF5_MOUSE (P59325) Eukaryotic translation initiation factor 5 (eIF-5)|
          Length = 429

 Score =  100 bits (250), Expect = 2e-21
 Identities = 45/60 (75%), Positives = 53/60 (88%)
 Frame = +2

Query: 410 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 589
           D FYRYKMPR++ K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K
Sbjct: 11  DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK 70



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>IF5_DROME (Q9VXK6) Eukaryotic translation initiation factor 5 (eIF-5)|
          Length = 464

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 45/72 (62%), Positives = 56/72 (77%)
 Frame = +2

Query: 374 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 553
           MA  N+  S   D FYRYKMPR+  K+EG+GNGIKT +VNM ++A+A+ RPA+Y TKYFG
Sbjct: 1   MATVNVNRS-VTDIFYRYKMPRLQAKVEGKGNGIKTVLVNMAEVARAIGRPATYPTKYFG 59

Query: 554 CELGAQSKFDEK 589
           CELGAQ+ FD K
Sbjct: 60  CELGAQTLFDHK 71



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>IF5_CAEEL (Q22918) Eukaryotic translation initiation factor 5 (eIF-5)|
          Length = 436

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 42/60 (70%), Positives = 48/60 (80%)
 Frame = +2

Query: 410 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 589
           D FYRYKMP++  K+EG+GNGIKT I NM +IAKAL RP  Y TKYFGCELGAQ+ FD K
Sbjct: 11  DPFYRYKMPKLSAKVEGKGNGIKTVISNMSEIAKALERPPMYPTKYFGCELGAQTNFDAK 70



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>IF5_SCHPO (Q09689) Probable eukaryotic translation initiation factor 5|
           (eIF-5)
          Length = 395

 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 43/67 (64%), Positives = 51/67 (76%)
 Frame = +2

Query: 374 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 553
           MA  NI    KD +FYRY+MP++ +KIEG+GNGIKT I NM DIAKAL RP  Y TK+FG
Sbjct: 1   MATINIRRDVKD-SFYRYRMPKLQSKIEGKGNGIKTVIPNMSDIAKALGRPPLYVTKFFG 59

Query: 554 CELGAQS 574
            ELGAQ+
Sbjct: 60  FELGAQT 66



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>IF5_YEAST (P38431) Eukaryotic translation initiation factor 5 (eIF-5)|
          Length = 405

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 36/55 (65%), Positives = 43/55 (78%)
 Frame = +2

Query: 410 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQS 574
           D FYRYKMP +  K+EGRGNGIKT ++N+ DI+ AL RPA Y  KYFG ELGAQ+
Sbjct: 11  DPFYRYKMPPIQAKVEGRGNGIKTAVLNVADISHALNRPAPYIVKYFGFELGAQT 65



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>IF2B_METKA (Q8TWR5) Translation initiation factor 2 beta subunit (eIF-2-beta)|
           (aIF2-beta)
          Length = 138

 Score = 34.3 bits (77), Expect = 0.29
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +2

Query: 422 RYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFD 583
           R++MP+    +EG+     T I N  +I+K L R   + TKYF  ELG     D
Sbjct: 26  RFEMPKPKVSVEGK----TTVIRNFKEISKKLDRDPEHITKYFLKELGTAGHVD 75



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>GLNA_BUTFI (Q05650) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS)
          Length = 700

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 584 HQTLIVPQAHTQSTWLCRKLAWQVLLLCQPCSQYWS*CH 468
           H + I P    +S+W  ++ +W    L    SQ+WS CH
Sbjct: 83  HDSFISPTEDGRSSWSSQEKSWLRANLMHQASQWWSSCH 121



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>RBSA_HAEIN (P44735) Ribose transport ATP-binding protein rbsA (EC 3.6.3.17)|
          Length = 493

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 520 GKCFCYVNHVHNIGLDAITTSFNFGQHSGHLVPVEGIILVGSTNV 386
           G+C   V HV   G+D +    +F  H+G +V V G++  G T +
Sbjct: 254 GECVLDVKHVSGSGIDDV----SFKLHAGEIVGVSGLMGAGRTEL 294



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>NU1M_TOLMA (Q70Y23) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 318

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 31/112 (27%), Positives = 50/112 (44%)
 Frame = -3

Query: 522 LASAFAMSTMFTILVLMPLPRPSILVSILGILYL*KASSLLEAPMFCSAILRKSFCRRCR 343
           LA   A S   ++ + MP+P P I ++ LG+L++   SSL    +  S     S      
Sbjct: 73  LAPMLAFSLALSMWIPMPMPHPLIHLN-LGVLFILALSSLAVYSILWSGWASNS------ 125

Query: 342 QMWQISEAIIAAGRWL*AQAVSSELSEPENLMGS*CMQGSTNLCLFLVAREY 187
                  A+I A R + AQ +S E++    L+ +  M GS  L      +E+
Sbjct: 126 -----KYALIGALRAV-AQTISYEVTLAIILLSTMMMNGSFTLSTLTTTQEH 171



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>MOAB_STAES (Q8CMK6) Molybdenum cofactor biosynthesis protein B|
          Length = 176

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -2

Query: 520 GKCFCYVNHVHNIGLDAITTSFNFGQHSGHLVPVEGIILVGSTNVLQRHLEKILLPQMS 344
           G+ F Y+++  ++G  A+ T    G     L+      L GST  ++  +EK++ P++S
Sbjct: 110 GELFRYLSYTEDVGTRALLTRAIAGTCDSTLI----FALPGSTGAIKLAIEKLIKPELS 164



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>MOAB_STAEQ (Q5HLX4) Molybdenum cofactor biosynthesis protein B|
          Length = 176

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -2

Query: 520 GKCFCYVNHVHNIGLDAITTSFNFGQHSGHLVPVEGIILVGSTNVLQRHLEKILLPQMS 344
           G+ F Y+++  ++G  A+ T    G     L+      L GST  ++  +EK++ P++S
Sbjct: 110 GELFRYLSYTEDVGTRALLTRAIAGTCDSTLI----FALPGSTGAIKLAIEKLIKPELS 164



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>Y023_MYCTU (P67704) Putative HTH-type transcriptional regulator Rv0023/MT0026|
          Length = 256

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +2

Query: 86  SVLLQSDKVEGYAEPSFMSEQASVYLG--SVGLLGEYSRATRKRHKFVLPCMHQEPIRFS 259
           SV+ Q  K E  A  S+   + +V  G  S G L E+ RA       +L  M   P   S
Sbjct: 140 SVIAQCVKAEMLAASSW---RVAVNAGADSTGRLMEHLRALEATRGALLERM---PTSLS 193

Query: 260 GSESSLDTACAQSHLPAAIIASEI 331
              +  D ACAQS LP A++A+ I
Sbjct: 194 ---ARFDRACAQSSLPEAVVAALI 214



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>Y023_MYCBO (P67705) Putative HTH-type transcriptional regulator Mb0023|
          Length = 256

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +2

Query: 86  SVLLQSDKVEGYAEPSFMSEQASVYLG--SVGLLGEYSRATRKRHKFVLPCMHQEPIRFS 259
           SV+ Q  K E  A  S+   + +V  G  S G L E+ RA       +L  M   P   S
Sbjct: 140 SVIAQCVKAEMLAASSW---RVAVNAGADSTGRLMEHLRALEATRGALLERM---PTSLS 193

Query: 260 GSESSLDTACAQSHLPAAIIASEI 331
              +  D ACAQS LP A++A+ I
Sbjct: 194 ---ARFDRACAQSSLPEAVVAALI 214



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>NU1M_TAMSI (O78698) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 318

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 14/40 (35%), Positives = 28/40 (70%)
 Frame = -3

Query: 522 LASAFAMSTMFTILVLMPLPRPSILVSILGILYL*KASSL 403
           +A + A++  FT+ + +P+P+P I ++ +GIL++   SSL
Sbjct: 73  IAPSLALTLAFTMWIPLPMPQPLINMN-MGILFILATSSL 111



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>LEU3_SYMTH (Q67JY2) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 368

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 134 FMSEQASVYLGSVGLLGEYSRATRKRHKFVLPCMHQEPIRFSGSE 268
           F+S++A++  GS+GLL   S     R++F LP    EPI  S  +
Sbjct: 253 FLSDEAAMLTGSIGLLPSASLGA-ARNRFGLPKGFYEPIHGSAPD 296


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,028,147
Number of Sequences: 219361
Number of extensions: 1775544
Number of successful extensions: 4437
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4436
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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