BLAST Search Form

Parameters

Choose program to use and database to search:
Program blastn tblastn tblastx
Rice Full-length cDNA DB is available!
<Database Barley full-length cDNA & EST (30,561,836 bp) [BaGS]Haruna shoots, germination 5'(2,932,847 bp) [BaGS]Haruna shoots, germination 3'(3,303,607 bp) [BaSD]Haruna seedling leaves 5'(2,708,326 bp) [BaSD]Haruna seedling leaves 3'(2,926,121 bp) [BaAL]Haruna top three leaves 5'(1,483,757 bp) [BaAL]Haruna top three leaves 3'(1,575,465 bp) [BaAK]Akashinriki leaves 5'(980,112 bp) [BaAK]Akashinriki leaves 3'(1,030,818 bp) [BaH]H602 top three leaves 5'(3,044,953 bp) [BaH]H602 top three leaves 3'(3,196,007 bp) Barleys(Hordeum) (Genbank) Rice full length cDNA (DDBJ) Rice(GenBank) RiceEST(GenBank) Rice + RiceEST(GenBank) Plant(GenBank) PlantEST(DDBJ) Plant (NCBI) + PlantEST (DDBJ)
Enter sequence below in FASTA format


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Options

The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only
Expect 0.0001 0.01 1 10 100 1000    Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:     

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Graphical Overview    Alignment view Pairwise master-slave with identities master-slave without identities flat master-slave with identities flat master-slave without identities BLAST XML Hit Table
Descriptions 0 10 50 100 250 500    Alignments 0 10 50 100 250 500 Color schema No color schema Color schema 1 Color schema 2 Color schema 3 Color schema 4 Color schema 5 Color schema 6