ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdf05 |
|---|---|
| Clone Library Name | barley_pub |
>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 43.5 bits (101), Expect = 2e-04 Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 1/107 (0%) Frame = +1 Query: 88 KREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMDR-KNREKEMAXXXX 264 +++ S++ EYF + E + +EEL P+Y+P +K+ I +A+D+ + + Sbjct: 624 QKKTASLLEEYFGIRILDEAQQCIEELQSPDYHPEIVKEAINLALDKGASFVDPLVKLLE 683 Query: 265 XXXXXXXXXXEDIVKGFIMLLESAEDTALDILDASDELGLFLARAVI 405 ED+ G ++ ED +D+ A + G +AR ++ Sbjct: 684 HLYTKKTFKTEDLENGCLLYGSLLEDIGIDLPKAPTQFGEVVARLIL 730
>IF4G2_RABIT (P79398) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel APOBEC-1 target 1) (Translation repressor NAT1) Length = 907 Score = 42.0 bits (97), Expect = 7e-04 Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 2/108 (1%) Frame = +1 Query: 103 SMIHEYFLSDDIAELIRTLEELGLPE-YNPVFIKKLITIAMDRKNREKEMAXXXXXXXXX 279 +++ EY S + E + ++E+ P+ + P + K+I +++DR + +KE A Sbjct: 550 TVVTEYLNSGNANEAVNGVKEMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQ 609 Query: 280 XXXXXED-IVKGFIMLLESAEDTALDILDASDELGLFLARAVIDDVLA 420 D ++ F+ +L+ +DI L F ARA+I ++++ Sbjct: 610 EGIGTSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVS 657
>IF4G2_HUMAN (P78344) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Death-associated protein 5) (DAP-5) Length = 907 Score = 42.0 bits (97), Expect = 7e-04 Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Frame = +1 Query: 103 SMIHEYFLSDDIAELIRTLEELGLPE-YNPVFIKKLITIAMDRKNREKEMAXXXXXXXXX 279 +++ EY S + E + + E+ P+ + P + K+I +++DR + +KE A Sbjct: 550 TVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQ 609 Query: 280 XXXXXED-IVKGFIMLLESAEDTALDILDASDELGLFLARAVIDDVLA 420 D ++ F+ +L+ +DI L F ARA+I ++++ Sbjct: 610 EGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVS 657
>IF4G2_MOUSE (Q62448) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel APOBEC-1 target 1) (Translation repressor NAT1) Length = 906 Score = 40.4 bits (93), Expect = 0.002 Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Frame = +1 Query: 103 SMIHEYFLSDDIAELIRTLEELGLPE-YNPVFIKKLITIAMDRKNREKEMAXXXXXXXXX 279 +++ +Y S + + + + E+ P+ + P + K+I +++DR + +KE A Sbjct: 549 AVVTDYLNSGNANDAVSGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQ 608 Query: 280 XXXXXED-IVKGFIMLLESAEDTALDILDASDELGLFLARAVIDDVLA 420 D ++ F+ +LE +DI L F ARA+I ++++ Sbjct: 609 EGIATSDNFMQAFLNVLEQCPKLEVDIPLVKSYLAQFAARAIISELVS 656
>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1579 Score = 38.9 bits (89), Expect = 0.006 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Frame = +1 Query: 88 KREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMDRKNREKE-MAXXXX 264 +R++ S+I E+ +D E + +EEL VF+K + ++R ++ M Sbjct: 1217 ERKSKSIIDEFLHINDFKEATQCIEELSAQGPLHVFVKVGVEFTLERSQITRDHMGHLLY 1276 Query: 265 XXXXXXXXXXEDIVKGFIMLLESAEDTALDILDASDELGLFLARAV 402 +D KGF LE A+D A+DI + L+LA V Sbjct: 1277 QLVQSEKLSKQDFFKGFSETLELADDMAIDI----PHIWLYLAELV 1318
>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1585 Score = 38.1 bits (87), Expect = 0.010 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Frame = +1 Query: 88 KREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMDRKNREKE-MAXXXX 264 +R++ S+I E+ +D E ++ +EEL VF++ + ++R ++ M Sbjct: 1223 ERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRVGVESTLERSQITRDHMGQLLY 1282 Query: 265 XXXXXXXXXXEDIVKGFIMLLESAEDTALDILDASDELGLFLARAV 402 +D KGF LE A+D A+DI + L+LA V Sbjct: 1283 QLVQSEKLSKQDFFKGFSETLELADDMAIDI----PHIWLYLAELV 1324
>IF4G2_BOVIN (Q95L46) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Fragment) Length = 136 Score = 35.8 bits (81), Expect = 0.049 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 2/100 (2%) Frame = +1 Query: 103 SMIHEYFLSDDIAELIRTLEELGLPE-YNPVFIKKLITIAMDRKNREKEMAXXXXXXXXX 279 +++ EY S + E + + E+ P+ + P + K+I +++DR + +KE A Sbjct: 37 TVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQ 96 Query: 280 XXXXXED-IVKGFIMLLESAEDTALDILDASDELGLFLAR 396 D ++ F+ +L+ +DI L F AR Sbjct: 97 EGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAAR 136
>IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1402 Score = 33.9 bits (76), Expect = 0.18 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Frame = +1 Query: 88 KREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMDRKNREKE-MAXXXX 264 ++++ ++I EY +D+ E ++ ++EL P +F++ I ++R +E M Sbjct: 1046 EKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGIESTLERSAIARERMGQLLH 1105 Query: 265 XXXXXXXXXXEDIVKGFIMLLESAEDTALDILDASDELGLFLARAV 402 +G +LE AED +DI + L+LA V Sbjct: 1106 QLLCAGHLSTAQYYQGLYEILELAEDMEIDI----PHVWLYLAELV 1147
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 33.5 bits (75), Expect = 0.24 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Frame = +1 Query: 88 KREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMDRKNREKE-MAXXXX 264 ++++ ++I EY +D+ E ++ ++EL P +F++ + ++R +E M Sbjct: 1244 EKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLH 1303 Query: 265 XXXXXXXXXXEDIVKGFIMLLESAEDTALDILDASDELGLFLARAV 402 +G +LE AED +DI + L+LA V Sbjct: 1304 QLLCAGHLSTAQYYQGLYEILELAEDMEIDI----PHVWLYLAELV 1345
>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) Length = 1600 Score = 32.7 bits (73), Expect = 0.41 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Frame = +1 Query: 88 KREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMDRKNREKE-MAXXXX 264 ++++ ++I EY +D+ E ++ ++EL P +F++ I ++R +E M Sbjct: 1243 EKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRLGIESTLERSTIAREHMGRLLH 1302 Query: 265 XXXXXXXXXXEDIVKGFIMLLESAEDTALDI 357 +G LE AED +DI Sbjct: 1303 QLLCAGHLSTAQYYQGLYETLELAEDMEIDI 1333
>GGPP3_ARATH (Q9LUD9) Geranylgeranyl pyrophosphate synthetase 3, chloroplast| precursor (GGPP synthetase 3) (GGPS3) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 360 Score = 32.0 bits (71), Expect = 0.70 Identities = 22/69 (31%), Positives = 36/69 (52%) Frame = +1 Query: 46 GNVQDDDHEKLRKYKREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMD 225 G +++ EKLRKY R + ++ + + DDI ++ ++ EELG V KL + Sbjct: 261 GGGTEEEIEKLRKYAR-CIGLLFQ--VVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLI 317 Query: 226 RKNREKEMA 252 R KE+A Sbjct: 318 GLERSKEVA 326
>LIPB_CAEEL (Q94071) Liprin-beta (LAR-interacting protein beta)| Length = 920 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Frame = +1 Query: 49 NVQDDDHEK-----LRKYKREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLI 210 N+++ H K LR+ + + + +++ D+ + +R L+++GLP+Y VF + ++ Sbjct: 658 NIKNPVHRKRVAILLRRIEEDIMEPANKW----DVHQTLRWLDDIGLPQYKDVFAENVV 712
>SCP_NERDI (P04571) Sarcoplasmic calcium-binding protein (SCP)| Length = 174 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +1 Query: 295 EDIVKGFIMLLESAEDTALDILDASDELGLFLARAVIDDVLAPLNLDEI 441 + +V+G + L A DT D + DE G+F +D +AP + D I Sbjct: 89 KSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAI 137
>GGPPS_HEVBR (Q94ID7) Geranylgeranyl pyrophosphate synthetase, chloroplast| precursor (GGPP synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 370 Score = 29.3 bits (64), Expect = 4.5 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Frame = +1 Query: 46 GNVQDDDHEKLRKYKREAVSMIHEYFLSDDIAELIRTLEELGLPE-----YNPVFIKKLI 210 G D++ EKLRKY R+ + ++ + + DDI ++ ++ +ELG + V KL+ Sbjct: 271 GGGTDEEVEKLRKYARD-IGLLFQ--VVDDILDVTKSSQELGKTAGKDLVADKVTYPKLL 327 Query: 211 TIAMDRKNREK 243 I R+ EK Sbjct: 328 GIEKSREFAEK 338
>SCNAA_HUMAN (P37088) Amiloride-sensitive sodium channel alpha-subunit| (Epithelial Na+ channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH) Length = 669 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -2 Query: 225 VHGNCYQFLDKDRVVLW*TKLFKCANKLCYIIRKE 121 ++GNCY F DK+ LW + + N L ++R E Sbjct: 301 MYGNCYTFNDKNNSNLWMSSMPGINNGLSLMLRAE 335
>SCNAA_RABIT (O97741) Amiloride-sensitive sodium channel alpha-subunit| (Epithelial Na+ channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH) Length = 640 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -2 Query: 225 VHGNCYQFLDKDRVVLW*TKLFKCANKLCYIIRKE 121 ++GNCY F DK+ LW + + N L +R E Sbjct: 278 MYGNCYTFNDKNNSSLWMSSMPGINNGLSLTLRTE 312 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.137 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,313,339 Number of Sequences: 219361 Number of extensions: 1059400 Number of successful extensions: 2060 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2027 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2058 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
