ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdf05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... 44 2e-04
2IF4G2_RABIT (P79398) Eukaryotic translation initiation factor 4 ... 42 7e-04
3IF4G2_HUMAN (P78344) Eukaryotic translation initiation factor 4 ... 42 7e-04
4IF4G2_MOUSE (Q62448) Eukaryotic translation initiation factor 4 ... 40 0.002
5IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 ... 39 0.006
6IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 ... 38 0.010
7IF4G2_BOVIN (Q95L46) Eukaryotic translation initiation factor 4 ... 36 0.049
8IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 ... 34 0.18
9IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 ... 33 0.24
10IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 ... 33 0.41
11GGPP3_ARATH (Q9LUD9) Geranylgeranyl pyrophosphate synthetase 3, ... 32 0.70
12LIPB_CAEEL (Q94071) Liprin-beta (LAR-interacting protein beta) 30 3.5
13SCP_NERDI (P04571) Sarcoplasmic calcium-binding protein (SCP) 29 4.5
14GGPPS_HEVBR (Q94ID7) Geranylgeranyl pyrophosphate synthetase, ch... 29 4.5
15SCNAA_HUMAN (P37088) Amiloride-sensitive sodium channel alpha-su... 29 5.9
16SCNAA_RABIT (O97741) Amiloride-sensitive sodium channel alpha-su... 28 7.7

>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
 Frame = +1

Query: 88  KREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMDR-KNREKEMAXXXX 264
           +++  S++ EYF    + E  + +EEL  P+Y+P  +K+ I +A+D+  +    +     
Sbjct: 624 QKKTASLLEEYFGIRILDEAQQCIEELQSPDYHPEIVKEAINLALDKGASFVDPLVKLLE 683

Query: 265 XXXXXXXXXXEDIVKGFIMLLESAEDTALDILDASDELGLFLARAVI 405
                     ED+  G ++     ED  +D+  A  + G  +AR ++
Sbjct: 684 HLYTKKTFKTEDLENGCLLYGSLLEDIGIDLPKAPTQFGEVVARLIL 730



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>IF4G2_RABIT (P79398) Eukaryotic translation initiation factor 4 gamma 2|
           (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel
           APOBEC-1 target 1) (Translation repressor NAT1)
          Length = 907

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
 Frame = +1

Query: 103 SMIHEYFLSDDIAELIRTLEELGLPE-YNPVFIKKLITIAMDRKNREKEMAXXXXXXXXX 279
           +++ EY  S +  E +  ++E+  P+ + P  + K+I +++DR + +KE A         
Sbjct: 550 TVVTEYLNSGNANEAVNGVKEMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQ 609

Query: 280 XXXXXED-IVKGFIMLLESAEDTALDILDASDELGLFLARAVIDDVLA 420
                 D  ++ F+ +L+      +DI      L  F ARA+I ++++
Sbjct: 610 EGIGTSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVS 657



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>IF4G2_HUMAN (P78344) Eukaryotic translation initiation factor 4 gamma 2|
           (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97)
           (Death-associated protein 5) (DAP-5)
          Length = 907

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
 Frame = +1

Query: 103 SMIHEYFLSDDIAELIRTLEELGLPE-YNPVFIKKLITIAMDRKNREKEMAXXXXXXXXX 279
           +++ EY  S +  E +  + E+  P+ + P  + K+I +++DR + +KE A         
Sbjct: 550 TVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQ 609

Query: 280 XXXXXED-IVKGFIMLLESAEDTALDILDASDELGLFLARAVIDDVLA 420
                 D  ++ F+ +L+      +DI      L  F ARA+I ++++
Sbjct: 610 EGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVS 657



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>IF4G2_MOUSE (Q62448) Eukaryotic translation initiation factor 4 gamma 2|
           (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel
           APOBEC-1 target 1) (Translation repressor NAT1)
          Length = 906

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
 Frame = +1

Query: 103 SMIHEYFLSDDIAELIRTLEELGLPE-YNPVFIKKLITIAMDRKNREKEMAXXXXXXXXX 279
           +++ +Y  S +  + +  + E+  P+ + P  + K+I +++DR + +KE A         
Sbjct: 549 AVVTDYLNSGNANDAVSGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQ 608

Query: 280 XXXXXED-IVKGFIMLLESAEDTALDILDASDELGLFLARAVIDDVLA 420
                 D  ++ F+ +LE      +DI      L  F ARA+I ++++
Sbjct: 609 EGIATSDNFMQAFLNVLEQCPKLEVDIPLVKSYLAQFAARAIISELVS 656



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>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3|
            (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II)
            (eIF4GII)
          Length = 1579

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
 Frame = +1

Query: 88   KREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMDRKNREKE-MAXXXX 264
            +R++ S+I E+   +D  E  + +EEL       VF+K  +   ++R    ++ M     
Sbjct: 1217 ERKSKSIIDEFLHINDFKEATQCIEELSAQGPLHVFVKVGVEFTLERSQITRDHMGHLLY 1276

Query: 265  XXXXXXXXXXEDIVKGFIMLLESAEDTALDILDASDELGLFLARAV 402
                      +D  KGF   LE A+D A+DI      + L+LA  V
Sbjct: 1277 QLVQSEKLSKQDFFKGFSETLELADDMAIDI----PHIWLYLAELV 1318



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>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3|
            (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II)
            (eIF4GII)
          Length = 1585

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
 Frame = +1

Query: 88   KREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMDRKNREKE-MAXXXX 264
            +R++ S+I E+   +D  E ++ +EEL       VF++  +   ++R    ++ M     
Sbjct: 1223 ERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRVGVESTLERSQITRDHMGQLLY 1282

Query: 265  XXXXXXXXXXEDIVKGFIMLLESAEDTALDILDASDELGLFLARAV 402
                      +D  KGF   LE A+D A+DI      + L+LA  V
Sbjct: 1283 QLVQSEKLSKQDFFKGFSETLELADDMAIDI----PHIWLYLAELV 1324



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>IF4G2_BOVIN (Q95L46) Eukaryotic translation initiation factor 4 gamma 2|
           (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Fragment)
          Length = 136

 Score = 35.8 bits (81), Expect = 0.049
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
 Frame = +1

Query: 103 SMIHEYFLSDDIAELIRTLEELGLPE-YNPVFIKKLITIAMDRKNREKEMAXXXXXXXXX 279
           +++ EY  S +  E +  + E+  P+ + P  + K+I +++DR + +KE A         
Sbjct: 37  TVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQ 96

Query: 280 XXXXXED-IVKGFIMLLESAEDTALDILDASDELGLFLAR 396
                 D  ++ F+ +L+      +DI      L  F AR
Sbjct: 97  EGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAAR 136



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>IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 gamma 1|
            (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220)
          Length = 1402

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
 Frame = +1

Query: 88   KREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMDRKNREKE-MAXXXX 264
            ++++ ++I EY   +D+ E ++ ++EL  P    +F++  I   ++R    +E M     
Sbjct: 1046 EKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGIESTLERSAIARERMGQLLH 1105

Query: 265  XXXXXXXXXXEDIVKGFIMLLESAEDTALDILDASDELGLFLARAV 402
                          +G   +LE AED  +DI      + L+LA  V
Sbjct: 1106 QLLCAGHLSTAQYYQGLYEILELAEDMEIDI----PHVWLYLAELV 1147



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>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1|
            (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220)
          Length = 1600

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
 Frame = +1

Query: 88   KREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMDRKNREKE-MAXXXX 264
            ++++ ++I EY   +D+ E ++ ++EL  P    +F++  +   ++R    +E M     
Sbjct: 1244 EKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLH 1303

Query: 265  XXXXXXXXXXEDIVKGFIMLLESAEDTALDILDASDELGLFLARAV 402
                          +G   +LE AED  +DI      + L+LA  V
Sbjct: 1304 QLLCAGHLSTAQYYQGLYEILELAEDMEIDI----PHVWLYLAELV 1345



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>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1|
            (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1)
          Length = 1600

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +1

Query: 88   KREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMDRKNREKE-MAXXXX 264
            ++++ ++I EY   +D+ E ++ ++EL  P    +F++  I   ++R    +E M     
Sbjct: 1243 EKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRLGIESTLERSTIAREHMGRLLH 1302

Query: 265  XXXXXXXXXXEDIVKGFIMLLESAEDTALDI 357
                          +G    LE AED  +DI
Sbjct: 1303 QLLCAGHLSTAQYYQGLYETLELAEDMEIDI 1333



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>GGPP3_ARATH (Q9LUD9) Geranylgeranyl pyrophosphate synthetase 3, chloroplast|
           precursor (GGPP synthetase 3) (GGPS3) [Includes:
           Dimethylallyltranstransferase (EC 2.5.1.1);
           Geranyltranstransferase (EC 2.5.1.10);
           Farnesyltranstransferase (EC 2.5.1.29)]
          Length = 360

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 22/69 (31%), Positives = 36/69 (52%)
 Frame = +1

Query: 46  GNVQDDDHEKLRKYKREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLITIAMD 225
           G   +++ EKLRKY R  + ++ +  + DDI ++ ++ EELG      V   KL    + 
Sbjct: 261 GGGTEEEIEKLRKYAR-CIGLLFQ--VVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLI 317

Query: 226 RKNREKEMA 252
              R KE+A
Sbjct: 318 GLERSKEVA 326



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>LIPB_CAEEL (Q94071) Liprin-beta (LAR-interacting protein beta)|
          Length = 920

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
 Frame = +1

Query: 49  NVQDDDHEK-----LRKYKREAVSMIHEYFLSDDIAELIRTLEELGLPEYNPVFIKKLI 210
           N+++  H K     LR+ + + +   +++    D+ + +R L+++GLP+Y  VF + ++
Sbjct: 658 NIKNPVHRKRVAILLRRIEEDIMEPANKW----DVHQTLRWLDDIGLPQYKDVFAENVV 712



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>SCP_NERDI (P04571) Sarcoplasmic calcium-binding protein (SCP)|
          Length = 174

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 295 EDIVKGFIMLLESAEDTALDILDASDELGLFLARAVIDDVLAPLNLDEI 441
           + +V+G + L   A DT  D   + DE G+F     +D  +AP + D I
Sbjct: 89  KSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAI 137



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>GGPPS_HEVBR (Q94ID7) Geranylgeranyl pyrophosphate synthetase, chloroplast|
           precursor (GGPP synthetase) [Includes:
           Dimethylallyltranstransferase (EC 2.5.1.1);
           Geranyltranstransferase (EC 2.5.1.10);
           Farnesyltranstransferase (EC 2.5.1.29)]
          Length = 370

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
 Frame = +1

Query: 46  GNVQDDDHEKLRKYKREAVSMIHEYFLSDDIAELIRTLEELGLPE-----YNPVFIKKLI 210
           G   D++ EKLRKY R+ + ++ +  + DDI ++ ++ +ELG         + V   KL+
Sbjct: 271 GGGTDEEVEKLRKYARD-IGLLFQ--VVDDILDVTKSSQELGKTAGKDLVADKVTYPKLL 327

Query: 211 TIAMDRKNREK 243
            I   R+  EK
Sbjct: 328 GIEKSREFAEK 338



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>SCNAA_HUMAN (P37088) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 669

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 225 VHGNCYQFLDKDRVVLW*TKLFKCANKLCYIIRKE 121
           ++GNCY F DK+   LW + +    N L  ++R E
Sbjct: 301 MYGNCYTFNDKNNSNLWMSSMPGINNGLSLMLRAE 335



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>SCNAA_RABIT (O97741) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 640

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 225 VHGNCYQFLDKDRVVLW*TKLFKCANKLCYIIRKE 121
           ++GNCY F DK+   LW + +    N L   +R E
Sbjct: 278 MYGNCYTFNDKNNSSLWMSSMPGINNGLSLTLRTE 312


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.137    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,313,339
Number of Sequences: 219361
Number of extensions: 1059400
Number of successful extensions: 2060
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2058
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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