ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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Clone |
Length |
Accession No. |
nt | uniprot | TIGR-ORF | RAP-ORF | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | |||
| basdj19 | 597 | AV925981 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basdj17 | 508 | AV925980 | not_full | gb|AY090545.1| Deschampsia antarctica clone Dacor 2.0 acetyl CoA synthetase mRNA, 3NULL UTR and partial cds Length = 768 | 145 | not_full | ACSA_RHOCA (O68040) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA ligase) (Acyl-activating enzyme) Length = 656 | 120 | -- | --- | - | -- | --- | - |
| basdj16 | 463 | AV925979 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basdj14 | 299 | AV925978 | not_full | emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein Length = 1225 | 383 | not_full | PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a) (PIP1a) (OsPIP1.1) (Water channel protein RWC1) (RWC-1) Length = 289 | 186 | -- | --- | - | -- | --- | - |
| basdj13 | 580 | AV925977 | not_full | emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein Length = 1225 | 453 | not_full | PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a) (PIP1a) (OsPIP1.1) (Water channel protein RWC1) (RWC-1) Length = 289 | 187 | -- | --- | - | -- | --- | - |
| basdj11 | 272 | AV836587 | not_full | ref|NM_192746.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 666 | 314 | not_full | RAN_VICFA (P38548) GTP-binding nuclear protein Ran/TC4 Length = 221 | 500 | -- | --- | - | -- | --- | - |
| basdj10 | 524 | AV925976 | not_full | emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein Length = 1225 | 470 | not_full | PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a) (PIP1a) (OsPIP1.1) (Water channel protein RWC1) (RWC-1) Length = 289 | 198 | -- | --- | - | -- | --- | - |
| basdj09 | 325 | AV925975 | not_full | gb|AY104875.1| Zea mays PCO067032 mRNA sequence Length = 1619 | 106 | not_full | F10A4_HUMAN (Q8IZP2) Protein FAM10A4 Length = 240 | 17 | -- | --- | - | -- | --- | - |
| basdj08 | 594 | AV925974 | not_full | gb|AY220735.1| Hordeum vulgare ubiquitin-conjugating enzyme (UBC) mRNA, complete cds Length = 758 | 277 | not_full | UBC4_LYCES (P35135) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) Length = 148 | 185 | -- | --- | - | -- | --- | - |
| basdj06 | 439 | AV836586 | not_full | dbj|AK102332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090N02, full insert sequence Length = 2117 | 16 | not_full | BACH_HALHM (P33970) Halorhodopsin (HR) (Fragment) Length = 206 | 12 | -- | --- | - | -- | --- | - |
| basdj03 | 564 | AV925973 | not_full | ref|XM_470294.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1340 | 159 | not_full | RPE_ORYSA (Q9ZTP5) Ribulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E) Length = 274 | 53 | -- | --- | - | -- | --- | - |
| basdj01 | 461 | AV925972 | not_full | ref|XM_470331.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1375 | 24 | not_full | ETFA_HUMAN (P13804) Electron transfer flavoprotein alpha-subunit, mitochondrial precursor (Alpha-ETF) Length = 333 | 28 | -- | --- | - | -- | --- | - |
| basdi24 | 487 | AV925971 | not_full | emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9 Length = 875 | 395 | full | RBS_HORVU (Q40004) Ribulose bisphosphate carboxylase small chain, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 174 | 169 | -- | --- | - | -- | --- | - |
| basdi23 | 405 | AV836585 | not_full | ref|XM_470008.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2457 | 61 | not_full | DED1_GIBZE (Q4I7K4) ATP-dependent RNA helicase DED1 (EC 3.6.1.-) Length = 675 | 36 | -- | --- | - | -- | --- | - |
| basdi22 | 142 | AV925970 | not_full | gb|AC112514.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0023M11, complete sequence Length = 120228 | 347 | not_full | GAG_SFV1 (Q00071) Gag polyprotein (Core polyprotein) Length = 647 | 1 | -- | --- | - | -- | --- | - |
| basdi20 | 622 | AV925969 | not_full | gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10, complete sequence Length = 149870 | 171 | not_full | IWS1_RAT (Q3SWT4) IWS1-like protein Length = 764 | 29 | -- | --- | - | -- | --- | - |
| basdi19 | 634 | AV925968 | full | gb|AY846823.1| Triticum aestivum ribosomal protein L13a mRNA, complete cds Length = 666 | 500 | not_full | R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2 Length = 206 | 57 | -- | --- | - | -- | --- | - |
| basdi16 | 529 | AV925967 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_KLULA (Q6CQE5) Protein TAR1 Length = 109 | 2 | -- | --- | - | -- | --- | - |
| basdi14 | 600 | AV925966 | not_full | ref|XM_477483.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1187 | 52 | not_full | ALDO1_ARATH (Q7G193) Aldehyde oxidase 1 (EC 1.2.3.1) (AtAO-1) (AtAO1) Length = 1368 | 55 | -- | --- | - | -- | --- | - |
| basdi12 | 414 | AV925965 | full | dbj|D01000.1|RICSODB Oryza sativa mRNA for copper/zinc-superoxide dismutase, complete cds, clone:RSODB Length = 667 | 240 | full | SODC4_MAIZE (P23345) Superoxide dismutase [Cu-Zn] 4A (EC 1.15.1.1) Length = 151 | 253 | -- | --- | - | -- | --- | - |
| basdi11 | 346 | AV925964 | full | dbj|D01000.1|RICSODB Oryza sativa mRNA for copper/zinc-superoxide dismutase, complete cds, clone:RSODB Length = 667 | 209 | not_full | SODC_ANACO (Q9SQL5) Superoxide dismutase [Cu-Zn] (EC 1.15.1.1) Length = 152 | 279 | -- | --- | - | -- | --- | - |
| basdi10 | 401 | AV925963 | not_full | gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 | 500 | not_full | ZN580_MOUSE (Q9DB38) Zinc finger protein 580 Length = 172 | 21 | -- | --- | - | -- | --- | - |
| basdi08 | 453 | AV925962 | not_full | ref|XM_550379.1| Oryza sativa (japonica cultivar-group), mRNA Length = 539 | 22 | not_full | PTP2_CAEEL (P28192) Tyrosine-protein phosphatase 2 (EC 3.1.3.48) (Protein-tyrosine phosphatase 2) Length = 1156 | 6 | -- | --- | - | -- | --- | - |
| basdi07 | 506 | AV925961 | not_full | gb|AY107574.1| Zea mays PCO137295 mRNA sequence Length = 719 | 102 | not_full | FAF_DROME (P55824) Probable ubiquitin carboxyl-terminal hydrolase FAF (EC 3.1.2.15) (Ubiquitin thioesterase FAF) (Ubiquitin specific-processing protease FAF) (Deubiquitinating enzyme FAF) (Protein fat facets) Length = 2778 | 13 | -- | --- | - | -- | --- | - |
| basdi06 | 395 | AV925960 | not_full | emb|Z48624.1|HVGRP3 H.vulgare mRNA for glycine-rich RNA binding protein Length = 907 | 500 | not_full | GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A Length = 166 | 254 | -- | --- | - | -- | --- | - |
| basdi05 | 485 | AV925959 | not_full | gb|M60175.1|BLYMUB1 Barley ubiquitin (mub1) gene, complete cds Length = 1815 | 500 | not_full | UBIQ_WHEAT (P69326) Ubiquitin Length = 76 | 187 | -- | --- | - | -- | --- | - |
| basdi04 | 153 | AV836584 | not_full | dbj|AK114452.1| Ciona intestinalis cDNA, clone:cieg002n03, full insert sequence Length = 1576 | 500 | not_full | TBA_TORMA (P36220) Tubulin alpha chain (Alpha T6) Length = 451 | 130 | -- | --- | - | -- | --- | - |
| basdi02 | 650 | AV925958 | not_full | ref|XM_465299.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1741 | 37 | not_full | CBX6_MOUSE (Q9DBY5) Chromobox protein homolog 6 Length = 414 | 10 | -- | --- | - | -- | --- | - |
| basdi01 | 596 | AV925957 | not_full | dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA polymerase subunit (rpo) genes Length = 21245 | 196 | not_full | RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase betaNULLNULL chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase betaNULLNULL subunit) (RNA polymerase betaNULLNULL subunit) Length = 1479 | 41 | -- | --- | - | -- | --- | - |
| basdh22 | 600 | AV836583 | not_full | ref|XM_478920.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1440 | 166 | not_full | FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51) (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 | 41 | -- | --- | - | -- | --- | - |
| basdh16 | 155 | AV925956 | not_full | emb|AL390774.10| Human DNA sequence from clone RP11-417B4 on chromosome 9 Contains part of the gene for a novel protein (KIAA1608), a novel gene, a LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM5) pseudogene and a phosphatidylinositol | 21 | -- | --- | 0 | -- | --- | - | -- | --- | - |
| basdh15 | 529 | AV925955 | not_full | ref|XM_464059.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1722 | 79 | not_full | DOCK3_HUMAN (Q8IZD9) Dedicator of cytokinesis protein 3 (Modifier of cell adhesion) (Presenilin-binding protein) (PBP protein) Length = 2030 | 5 | -- | --- | - | -- | --- | - |
| basdh13 | 367 | AV925954 | not_full | gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 | 28 | not_full | SCFD2_HUMAN (Q8WU76) Sec1 family domain-containing protein 2 (Syntaxin-binding protein 1-like 1) Length = 684 | 8 | -- | --- | - | -- | --- | - |
| basdh10 | 483 | AV925953 | not_full | ref|XM_468078.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4569 | 23 | not_full | MYO51_SCHPO (O74805) Myosin-51 (Myosin type V-1) Length = 1471 | 49 | -- | --- | - | -- | --- | - |
| basdh09 | 508 | AV925952 | not_full | ref|XM_468078.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4569 | 26 | not_full | MYO51_SCHPO (O74805) Myosin-51 (Myosin type V-1) Length = 1471 | 58 | -- | --- | - | -- | --- | - |
| basdh08 | 260 | AV925951 | not_full | gb|AY104556.1| Zea mays PCO062780 mRNA sequence Length = 1260 | 14 | not_full | WT1_PIG (O62651) WilmsNULL tumor protein homolog Length = 449 | 10 | -- | --- | - | -- | --- | - |
| basdh06 | 481 | AV925950 | not_full | emb|Y08490.1|HVATUB2 H.vulgare mRNA for alpha-tubulin 2 Length = 1708 | 500 | not_full | TBA_WHEAT (Q9ZRB7) Tubulin alpha chain Length = 451 | 411 | -- | --- | - | -- | --- | - |
| basdh05 | 464 | AV925949 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basdh03 | 343 | AV925948 | not_full | gb|AY103703.1| Zea mays PCO150529 mRNA sequence Length = 595 | 53 | not_full | NOLA3_BRARE (Q6DRH5) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family A member 3) Length = 64 | 25 | -- | --- | - | -- | --- | - |
| basdh02 | 637 | AV925947 | not_full | gb|AY325266.1| Hordeum vulgare cytosolic heat shock protein 90 (HSP90) mRNA, complete cds Length = 2553 | 500 | not_full | HSP80_LYCES (P36181) Heat shock cognate protein 80 Length = 699 | 235 | -- | --- | - | -- | --- | - |
| basdh01 | 584 | AV836582 | not_full | ref|NM_185396.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3968 | 111 | not_full | CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 | 21 | -- | --- | - | -- | --- | - |
| basdg23 | 504 | AV925946 | not_full | emb|AL034351.1|HS879K22 Human DNA sequence from clone RP5-879K22 on chromosome 1q32.1-41 Contains part of the gene for melanoma antigen recognized by T cells 2 protein (MART2), complete sequence Length = 137678 | 76 | not_full | BROM1_ANACO (O23791) Bromelain precursor (EC 3.4.22.32) (Allergen Ana c 2) Length = 351 | 115 | -- | --- | - | -- | --- | - |
| basdg22 | 603 | AV925945 | not_full | gb|AY106167.1| Zea mays PCO141571 mRNA sequence Length = 641 | 396 | not_full | RL44_ARATH (O23290) 60S ribosomal protein L44 Length = 104 | 64 | -- | --- | - | -- | --- | - |
| basdg21 | 599 | AV925944 | not_full | gb|AY137514.1| Hordeum vulgare subsp. vulgare hypersensitive-induced reaction protein 4 mRNA, complete cds Length = 1238 | 90 | full | PLZ12_LUPPO (P16148) Protein PPLZ12 Length = 184 | 43 | -- | --- | - | -- | --- | - |
| basdg20 | 553 | AV925943 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | POF13_SCHPO (O94334) F-box protein pof13 Length = 396 | 6 | -- | --- | - | -- | --- | - |
| basdg19 | 595 | AV925942 | not_full | dbj|AK100941.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138C14, full insert sequence Length = 1679 | 54 | not_full | YPFP_BACSU (P54166) Putative glycosyl transferase ypfP (EC 2.-.-.-) Length = 382 | 92 | -- | --- | - | -- | --- | - |
| basdg18 | 415 | AV925941 | not_full | gb|AY525640.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;2 mRNA, complete cds Length = 853 | 266 | not_full | TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrinsic protein 2.2) (OsTIP2.2) Length = 248 | 342 | -- | --- | - | -- | --- | - |
| basdg17 | 502 | AV925940 | not_full | gb|AC069313.5| Homo sapiens BAC clone CTD-2016H9 from 7, complete sequence Length = 100679 | 91 | not_full | MUTS_BRUSU (Q8G310) DNA mismatch repair protein mutS Length = 910 | 10 | -- | --- | - | -- | --- | - |
| basdg16 | 364 | AV925939 | not_full | dbj|AK059024.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-B07, full insert sequence Length = 1462 | 54 | not_full | NOLA3_ARATH (Q93XX8) H/ACA ribonucleoprotein complex subunit 3-like protein Length = 64 | 33 | -- | --- | - | -- | --- | - |
| basdg15 | 364 | AV925938 | not_full | dbj|AK059024.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-B07, full insert sequence Length = 1462 | 54 | not_full | NOLA3_ARATH (Q93XX8) H/ACA ribonucleoprotein complex subunit 3-like protein Length = 64 | 33 | -- | --- | - | -- | --- | - |
