Clone Name | basdj01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470331.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1375 Score = 240 bits (121), Expect = 3e-60 Identities = 256/302 (84%) Strand = Plus / Plus Query: 101 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 160 |||||||||||||| |||||||| || ||||||||||| || || ||||||||||||||| Sbjct: 405 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 464 Query: 161 ctgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcg 220 || || || | || ||||| ||| |||||||||| ||||| ||||| || || || ||| Sbjct: 465 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 524 Query: 221 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 280 ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| Sbjct: 525 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 584 Query: 281 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 340 |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || Sbjct: 585 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 644 Query: 341 tgcactgtacgatataccggggagtctccttgtatgatgagtattanatcaacatcattt 400 || ||||| |||||||| || ||| ||| ||||||||||| |||| |||||||||||| Sbjct: 645 tgtactgtgcgatatactggagaggatccatgtatgatgagcattaggtcaacatcattt 704 Query: 401 tc 402 || Sbjct: 705 tc 706 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 17 gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63 |||||||| ||| || |||||||||||||||| ||| |||||||||| Sbjct: 222 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 268
>ref|XM_470330.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1437 Score = 240 bits (121), Expect = 3e-60 Identities = 256/302 (84%) Strand = Plus / Plus Query: 101 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 160 |||||||||||||| |||||||| || ||||||||||| || || ||||||||||||||| Sbjct: 420 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 479 Query: 161 ctgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcg 220 || || || | || ||||| ||| |||||||||| ||||| ||||| || || || ||| Sbjct: 480 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 539 Query: 221 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 280 ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| Sbjct: 540 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 599 Query: 281 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 340 |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || Sbjct: 600 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 659 Query: 341 tgcactgtacgatataccggggagtctccttgtatgatgagtattanatcaacatcattt 400 || ||||| |||||||| || ||| ||| ||||||||||| |||| |||||||||||| Sbjct: 660 tgtactgtgcgatatactggagaggatccatgtatgatgagcattaggtcaacatcattt 719 Query: 401 tc 402 || Sbjct: 720 tc 721 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 17 gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63 |||||||| ||| || |||||||||||||||| ||| |||||||||| Sbjct: 237 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 283
>dbj|AK105896.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F02, full insert sequence Length = 1368 Score = 240 bits (121), Expect = 3e-60 Identities = 256/302 (84%) Strand = Plus / Plus Query: 101 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 160 |||||||||||||| |||||||| || ||||||||||| || || ||||||||||||||| Sbjct: 444 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 503 Query: 161 ctgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcg 220 || || || | || ||||| ||| |||||||||| ||||| ||||| || || || ||| Sbjct: 504 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 563 Query: 221 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 280 ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| Sbjct: 564 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 623 Query: 281 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 340 |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || Sbjct: 624 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 683 Query: 341 tgcactgtacgatataccggggagtctccttgtatgatgagtattanatcaacatcattt 400 || ||||| |||||||| || ||| ||| ||||||||||| |||| |||||||||||| Sbjct: 684 tgtactgtgcgatatactggagaggatccatgtatgatgagcattaggtcaacatcattt 743 Query: 401 tc 402 || Sbjct: 744 tc 745 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 17 gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63 |||||||| ||| || |||||||||||||||| ||| |||||||||| Sbjct: 261 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 307
>dbj|AK061773.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D01, full insert sequence Length = 1368 Score = 240 bits (121), Expect = 3e-60 Identities = 256/302 (84%) Strand = Plus / Plus Query: 101 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 160 |||||||||||||| |||||||| || ||||||||||| || || ||||||||||||||| Sbjct: 444 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 503 Query: 161 ctgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcg 220 || || || | || ||||| ||| |||||||||| ||||| ||||| || || || ||| Sbjct: 504 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 563 Query: 221 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 280 ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| Sbjct: 564 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 623 Query: 281 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 340 |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || Sbjct: 624 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 683 Query: 341 tgcactgtacgatataccggggagtctccttgtatgatgagtattanatcaacatcattt 400 || ||||| |||||||| || ||| ||| ||||||||||| |||| |||||||||||| Sbjct: 684 tgtactgtgcgatatactggagaggatccatgtatgatgagcattaggtcaacatcattt 743 Query: 401 tc 402 || Sbjct: 744 tc 745 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 17 gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63 |||||||| ||| || |||||||||||||||| ||| |||||||||| Sbjct: 261 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 307
>dbj|AK098986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093P06, full insert sequence Length = 1320 Score = 232 bits (117), Expect = 8e-58 Identities = 255/302 (84%) Strand = Plus / Plus Query: 101 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 160 |||||||||||||| |||||||| || ||||||||||| || || ||||||||||||||| Sbjct: 432 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 491 Query: 161 ctgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcg 220 || || || | || ||||| ||| |||||||||| ||||| ||||| || || || ||| Sbjct: 492 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 551 Query: 221 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 280 ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| Sbjct: 552 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 611 Query: 281 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 340 |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || Sbjct: 612 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 671 Query: 341 tgcactgtacgatataccggggagtctccttgtatgatgagtattanatcaacatcattt 400 || ||||| |||||||| || ||| ||| ||||||||| | |||| |||||||||||| Sbjct: 672 tgtactgtgcgatatactggagaggatccatgtatgatgggcattaggtcaacatcattt 731 Query: 401 tc 402 || Sbjct: 732 tc 733 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 17 gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63 |||||||| ||| || |||||||||||||||| ||| |||||||||| Sbjct: 249 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 295
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 168 bits (85), Expect = 1e-38 Identities = 182/215 (84%) Strand = Plus / Plus Query: 102 aggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgagc 161 ||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||| Sbjct: 34797258 aggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgagc 34797317 Query: 162 tgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcgt 221 | || || | || ||||| ||| |||||||||| ||||| ||||| || || || |||| Sbjct: 34797318 tacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcgt 34797377 Query: 222 tcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggacg 281 |||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| | Sbjct: 34797378 tcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggatg 34797437 Query: 282 tcactgccatatctgaaccatgggtctttgtgagg 316 ||||| | |||||||| ||| | |||||||||||| Sbjct: 34797438 tcacttcaatatctgagccacgagtctttgtgagg 34797472 Score = 75.8 bits (38), Expect = 1e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 314 aggccaatttatgctggaaatgcactctgcactgtacgatataccggggagtctccttgt 373 ||||| ||||||||||||||||| || || ||||| |||||||| || ||| ||| ||| Sbjct: 34798087 aggcccatttatgctggaaatgcgctttgtactgtgcgatatactggagaggatccatgt 34798146 Query: 374 atgatgagtattanatcaacatcattttc 402 |||||||| |||| |||||||||||||| Sbjct: 34798147 atgatgagcattaggtcaacatcattttc 34798175 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 17 gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63 |||||||| ||| || |||||||||||||||| ||| |||||||||| Sbjct: 34796918 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 34796964
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 168 bits (85), Expect = 1e-38 Identities = 182/215 (84%) Strand = Plus / Minus Query: 102 aggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgagc 161 ||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||| Sbjct: 65392 aggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgagc 65333 Query: 162 tgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcgt 221 | || || | || ||||| ||| |||||||||| ||||| ||||| || || || |||| Sbjct: 65332 tacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcgt 65273 Query: 222 tcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggacg 281 |||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| | Sbjct: 65272 tcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggatg 65213 Query: 282 tcactgccatatctgaaccatgggtctttgtgagg 316 ||||| | |||||||| ||| | |||||||||||| Sbjct: 65212 tcacttcaatatctgagccacgagtctttgtgagg 65178 Score = 75.8 bits (38), Expect = 1e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 314 aggccaatttatgctggaaatgcactctgcactgtacgatataccggggagtctccttgt 373 ||||| ||||||||||||||||| || || ||||| |||||||| || ||| ||| ||| Sbjct: 64563 aggcccatttatgctggaaatgcgctttgtactgtgcgatatactggagaggatccatgt 64504 Query: 374 atgatgagtattanatcaacatcattttc 402 |||||||| |||| |||||||||||||| Sbjct: 64503 atgatgagcattaggtcaacatcattttc 64475 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 17 gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63 |||||||| ||| || |||||||||||||||| ||| |||||||||| Sbjct: 65732 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 65686
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 168 bits (85), Expect = 1e-38 Identities = 182/215 (84%) Strand = Plus / Plus Query: 102 aggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgagc 161 ||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||| Sbjct: 34887330 aggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgagc 34887389 Query: 162 tgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcgt 221 | || || | || ||||| ||| |||||||||| ||||| ||||| || || || |||| Sbjct: 34887390 tacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcgt 34887449 Query: 222 tcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggacg 281 |||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| | Sbjct: 34887450 tcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggatg 34887509 Query: 282 tcactgccatatctgaaccatgggtctttgtgagg 316 ||||| | |||||||| ||| | |||||||||||| Sbjct: 34887510 tcacttcaatatctgagccacgagtctttgtgagg 34887544 Score = 75.8 bits (38), Expect = 1e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 314 aggccaatttatgctggaaatgcactctgcactgtacgatataccggggagtctccttgt 373 ||||| ||||||||||||||||| || || ||||| |||||||| || ||| ||| ||| Sbjct: 34888159 aggcccatttatgctggaaatgcgctttgtactgtgcgatatactggagaggatccatgt 34888218 Query: 374 atgatgagtattanatcaacatcattttc 402 |||||||| |||| |||||||||||||| Sbjct: 34888219 atgatgagcattaggtcaacatcattttc 34888247 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 17 gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63 |||||||| ||| || |||||||||||||||| ||| |||||||||| Sbjct: 34886990 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 34887036
>dbj|AK064539.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-A02, full insert sequence Length = 1585 Score = 168 bits (85), Expect = 1e-38 Identities = 182/215 (84%) Strand = Plus / Minus Query: 102 aggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgagc 161 ||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||| Sbjct: 549 aggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgagc 490 Query: 162 tgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcgt 221 | || || | || ||||| ||| |||||||||| ||||| ||||| || || || |||| Sbjct: 489 tacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcgt 430 Query: 222 tcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggacg 281 |||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| | Sbjct: 429 tcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggatg 370 Query: 282 tcactgccatatctgaaccatgggtctttgtgagg 316 ||||| | |||||||| ||| | |||||||||||| Sbjct: 369 tcacttcaatatctgagccacgagtctttgtgagg 335 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 17 gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63 |||||||| ||| || |||||||||||||||| ||| |||||||||| Sbjct: 889 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 843
>gb|BT018571.1| Zea mays clone EL01N0442H06.d mRNA sequence Length = 1324 Score = 167 bits (84), Expect = 4e-38 Identities = 240/293 (81%) Strand = Plus / Minus Query: 131 gcgcatcctttagccgagccttgggccgagctgctccgctncgtgcagcagaaangtgga 190 ||||||||| | || || || ||||||||||| ||||| | ||| ||||||||| | || Sbjct: 1021 gcgcatcctctggctgaaccctgggccgagctactccgttccgttcagcagaaaggaggc 962 Query: 191 tactctcatgtgatagcctcgtcgacgtcgttcgggaagaatttgcttccacgcgccgcg 250 ||||||||||| ||||| || || || || ||||||||||||||||||||||| || ||| Sbjct: 961 tactctcatgtcatagcttcatccacatcattcgggaagaatttgcttccacgtgctgcg 902 Query: 251 gctcttctagatgtctcccctgtcacggacgtcactgccatatctgaaccatgggtcttt 310 ||||| || ||||| |||||||| || || ||||| || || || ||| |||||| Sbjct: 901 gctctccttgatgtgtcccctgttactgatgtcaccgctgtaaaggagccacacgtcttt 842 Query: 311 gtgaggccaatttatgctggaaatgcactctgcactgtacgatataccggggagtctcct 370 ||||||||||||||||||||||||||||| || ||||| |||||| || ||| ||| Sbjct: 841 gtgaggccaatttatgctggaaatgcactttgtactgtgaaatatactggagaggggcct 782 Query: 371 tgtatgatgagtattanatcaacatcattttctctagctaccgagtctatgtc 423 || ||||||||||||| |||||| |||||||| | |||||| ||| ||||||| Sbjct: 781 tgcatgatgagtattagatcaacttcattttccccagctactgaggctatgtc 729 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 15 tcgtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63 |||||||||| || || |||||||||||||||||||| |||| ||||| Sbjct: 1233 tcgtgagcacgctcgtcgtagcggagcacgaaggcgggttcgtcaagcc 1185
>gb|AY107426.1| Zea mays PCO089573 mRNA sequence Length = 686 Score = 105 bits (53), Expect = 1e-19 Identities = 120/143 (83%) Strand = Plus / Plus Query: 131 gcgcatcctttagccgagccttgggccgagctgctccgctncgtgcagcagaaangtgga 190 ||||||||| | || || || ||||||||||| ||||| | ||| ||||||||| | || Sbjct: 378 gcgcatcctctggctgaaccctgggccgagctactccgttccgttcagcagaaaggaggc 437 Query: 191 tactctcatgtgatagcctcgtcgacgtcgttcgggaagaatttgcttccacgcgccgcg 250 ||||||||||| ||||| || || || || ||||||||||||||||||||||| || ||| Sbjct: 438 tactctcatgtcatagcttcatccacatcattcgggaagaatttgcttccacgtgctgcg 497 Query: 251 gctcttctagatgtctcccctgt 273 ||||| || ||||| |||||||| Sbjct: 498 gctctccttgatgtgtcccctgt 520 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 15 tcgtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63 |||||||||| || || |||||||||||||||||||| |||| ||||| Sbjct: 166 tcgtgagcacgctcgtcgtagcggagcacgaaggcgggttcgtcaagcc 214
>gb|AC139758.3| Mus musculus BAC clone RP23-367E7 from chromosome 14, complete sequence Length = 210969 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 gtctagccacccattggtcaa 99 ||||||||||||||||||||| Sbjct: 149289 gtctagccacccattggtcaa 149309
>gb|AC126243.3| Mus musculus BAC clone RP24-260I19 from chromosome 14, complete sequence Length = 180553 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 gtctagccacccattggtcaa 99 ||||||||||||||||||||| Sbjct: 143462 gtctagccacccattggtcaa 143442
>emb|AL163195.5|CNS01RIH Human chromosome 14 DNA sequence BAC R-14J7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162209 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 gggaagaatttgcttccacgc 244 ||||||||||||||||||||| Sbjct: 99478 gggaagaatttgcttccacgc 99458
>emb|CR974571.9| Mouse DNA sequence from clone RP23-145P19 on chromosome 12, complete sequence Length = 219782 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 tgcactctgcactgtacgat 353 |||||||||||||||||||| Sbjct: 99479 tgcactctgcactgtacgat 99498
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tgatagcctcgtcgacgtcg 220 |||||||||||||||||||| Sbjct: 2594499 tgatagcctcgtcgacgtcg 2594480
>gb|AC027285.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-40I5, complete sequence Length = 241886 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 tcaatgaggttcttgttgcg 115 |||||||||||||||||||| Sbjct: 193147 tcaatgaggttcttgttgcg 193166
>gb|AC117530.2| Homo sapiens chromosome 5 clone RP11-294P1, complete sequence Length = 172442 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gggaagaatttgcttccacg 243 |||||||||||||||||||| Sbjct: 129898 gggaagaatttgcttccacg 129917
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 tggatactctcatgtgatag 206 |||||||||||||||||||| Sbjct: 1935761 tggatactctcatgtgatag 1935742
>gb|AC153836.5| Mus musculus 6 BAC RP23-479D21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 231946 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 tcaatgaggttcttgttgcg 115 |||||||||||||||||||| Sbjct: 133390 tcaatgaggttcttgttgcg 133409
>gb|AC153905.5| Mus musculus 6 BAC RP23-215A7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215955 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gagtctccttgtatgatgag 381 |||||||||||||||||||| Sbjct: 214964 gagtctccttgtatgatgag 214945
>gb|AC153601.6| Mus musculus 6 BAC RP23-405O6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 201911 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gagtctccttgtatgatgag 381 |||||||||||||||||||| Sbjct: 46299 gagtctccttgtatgatgag 46280
>gb|CP000231.1| Rhodospirillum rubrum ATCC 11170 plasmid, complete sequence Length = 53732 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ccaatttatgctggaaatgc 336 |||||||||||||||||||| Sbjct: 49961 ccaatttatgctggaaatgc 49980
>emb|AL691453.7| Mouse DNA sequence from clone RP23-17K2 on chromosome 4, complete sequence Length = 94498 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tccttgtatgatgagtatta 386 |||||||||||||||||||| Sbjct: 72381 tccttgtatgatgagtatta 72362 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,458,393 Number of Sequences: 3902068 Number of extensions: 2458393 Number of successful extensions: 36478 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36383 Number of HSP's gapped (non-prelim): 94 length of query: 461 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 439 effective length of database: 17,147,199,772 effective search space: 7527620699908 effective search space used: 7527620699908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)