ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdi20 |
|---|---|
| Clone Library Name | barley_pub |
>IWS1_RAT (Q3SWT4) IWS1-like protein| Length = 764 Score = 35.8 bits (81), Expect = 0.10 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 9/136 (6%) Frame = +3 Query: 6 NEAYKPQRPQGSNLQA----KPHVMLNKQSRPPSSDSGSIMRPMKAATQQKPIGEMKYKQ 173 +E+ P RPQ S+ ++ KP V ++ P + + ++KP E + Sbjct: 224 SESEDPPRPQASDSESEELPKPRVSDSESEDPQKGPASDSEAEDASRHKEKPESEDSDGE 283 Query: 174 TQEHFGVERKPAMGHVDKSRLRAQPSAGVRLESAKPKTQDGLESNGRLEAAKRRL----- 338 + + + GH D+ L + S + K + D E G + AKR+ Sbjct: 284 NKREDSEVQNESDGHADRKGLHSSDSEEEEPKRQKIDSDDDGEKEGDEKVAKRKAAVLSD 343 Query: 339 QERYQEAENAKKQRTI 386 E +A AKK R I Sbjct: 344 SEDEDKASAAKKSRVI 359
>IPP1_RAT (P19103) Protein phosphatase inhibitor 1 (IPP-1) (I-1)| Length = 171 Score = 34.3 bits (77), Expect = 0.30 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +3 Query: 9 EAYKPQRPQGSNLQAKPHVMLNKQSRPPS-SDSGSIMRPMKAATQQKPIGEMKYKQTQEH 185 E + Q+ QG + N++S PP D+GS RP + T QKP E K K TQE Sbjct: 89 EHHLGQQKQGEEPEGATESTGNQESCPPGIPDTGSASRPDTSGTAQKP-AESKPK-TQEQ 146 Query: 186 FGVE 197 GVE Sbjct: 147 RGVE 150
>MK07_MOUSE (Q9WVS8) Mitogen-activated protein kinase 7 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 5) (ERK-5) (BMK1 kinase) Length = 806 Score = 34.3 bits (77), Expect = 0.30 Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 1/152 (0%) Frame = +3 Query: 9 EAYKPQRPQGSNLQAKPHVMLNKQSRPPSSDSGSIMRPMKAATQQKPIGEMKYKQTQEHF 188 E P P G P L S P ++P A++ P + ++ Sbjct: 418 EMPSPWAPSGDCAMESPPPALPPCSDPAPDTVDLTLQPAPPASELAP--PKREGAISDNT 475 Query: 189 GVERKPAMGHVDKSRLRAQPSAGVRL-ESAKPKTQDGLESNGRLEAAKRRLQERYQEAEN 365 K A+ +SRLR PSA + E KP T E E +RR QER +E E Sbjct: 476 KAALKAALLKSLRSRLRDGPSAPLEAPEPRKPVTAQ--ERQREREEKRRRRQERAKEREK 533 Query: 366 AKKQRTIQVMELGDIPKPKSHTKQPMAKSRNN 461 +++R + G + P + + S N+ Sbjct: 534 RRQERERKERGAGTLGGPSTDPLAGLVLSDND 565
>TULP1_MOUSE (Q9Z273) Tubby-related protein 1 (Tubby-like protein 1)| Length = 543 Score = 33.5 bits (75), Expect = 0.52 Identities = 20/70 (28%), Positives = 34/70 (48%) Frame = +3 Query: 231 RLRAQPSAGVRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDI 410 R + +P+ G +L KP+T D LES R A RR E + ++ + R Q + + Sbjct: 30 RPKQRPAQGQKLRKKKPETPDSLESKPRKAGAGRRKHE--EPPADSAEPRAAQTVYAKFL 87 Query: 411 PKPKSHTKQP 440 P++ + P Sbjct: 88 RDPEAKKRDP 97
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 33.1 bits (74), Expect = 0.68 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 7/148 (4%) Frame = +3 Query: 66 MLNKQSRPPSS---DSGSIMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRL 236 ++ K PSS S + A ++K E K EH +K RL Sbjct: 1205 LVQKHPTTPSSTAKSSSDSFEQFRRAAREKEEREKALKAQAEH---------AEKEKERL 1255 Query: 237 RAQPSAGVRLESAKPKTQDGLESNGRL-EAAKRRLQERYQEAENAKKQRTIQVMELGDIP 413 R + R+ S + +D LE R E A+RR +++ Q+ + ++Q+ Q + Sbjct: 1256 RQE-----RMRSRED--EDALEQARRAHEEARRRQEQQQQQRQEQQQQQQQQAAAVAAAA 1308 Query: 414 KPKSHTKQPMA---KSRNNIRSRVLGRR 488 P++ + QP + + R R R RR Sbjct: 1309 TPQAQSSQPQSMLDQQRELARKREQERR 1336
>H11_GLYBA (P40263) Histone H1-I| Length = 233 Score = 32.0 bits (71), Expect = 1.5 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Frame = +3 Query: 102 SGSIMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSAGVRLESAKP 281 SGS P A +P K K T+ VERK +K + +P V ++AKP Sbjct: 118 SGSFKMPPPAKKVDRPESAPKKKATKTKTRVERK------EKKVVAKKPKPAVEKKAAKP 171 Query: 282 KTQDGLESNGRLEA----AKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSHTKQPMAK 449 + +A A ++ + + A K + + KPK+ ++P K Sbjct: 172 AAKKAAAKPAAKKAAAKPAAKKPAAKASPKKAAAKPKAKPTPKKSTPAKPKAAARKPAKK 231 Query: 450 SR 455 S+ Sbjct: 232 SK 233
>GELS_PIG (P20305) Gelsolin precursor (Actin-depolymerizing factor) (ADF)| (Brevin) (Fragment) Length = 772 Score = 32.0 bits (71), Expect = 1.5 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +3 Query: 162 KYKQTQEHFGVERKPAMG--HVDKSRLRAQPSAGVRLESAKPKTQDGLESNGRLEAAKRR 335 + K TQ G+ G HV S A+P+ +++ KP +G E + +AA R+ Sbjct: 227 RLKATQVSKGIRDNERSGRAHVHVSEEDAEPAGMLQVLGPKPTLPEGTEDTVKEDAANRK 286 Query: 336 LQERYQEAENA 368 L + Y+ + A Sbjct: 287 LAKLYKVSNGA 297
>PPIG_HUMAN (Q13427) Peptidyl-prolyl cis-trans isomerase G (EC 5.2.1.8)| (Peptidyl-prolyl isomerase G) (PPIase G) (Rotamase G) (Cyclophilin G) (Clk-associating RS-cyclophilin) (CARS-cyclophilin) (CARS-Cyp) (SR-cyclophilin) (SRcyp) (SR-cyp) (CASP10) Length = 754 Score = 32.0 bits (71), Expect = 1.5 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 14/146 (9%) Frame = +3 Query: 72 NKQSRPPSSDSGSIMRPMKAATQQKPI-GEMKYKQTQEHFGVERKPAMGHVDKSRLRAQP 248 + QS SSDS S ++K K+K+ ++ +K A + L AQP Sbjct: 209 DSQSSSDSSDSESATEEKSKKRKKKHRKNSRKHKKEKKKRKKSKKSASSESEAENLEAQP 268 Query: 249 SAGVRLESAKPKTQDGL---ESNGRLEAAKRRLQERYQEAE-------NAKKQRTIQVME 398 + VR E P ++ +S + + +R+ +ER +E E A QR + V Sbjct: 269 QSTVRPEEIPPIPENRFLMRKSPPKADEKERKNRERERERECNPPNSQPASYQRRLLVTR 328 Query: 399 LGDIPK---PKSHTKQPMAKSRNNIR 467 G K P+ + ++SR+ R Sbjct: 329 SGRKIKGRGPRRYRTPSRSRSRDRFR 354
>IWS1_MOUSE (Q8C1D8) IWS1-like protein| Length = 766 Score = 32.0 bits (71), Expect = 1.5 Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 8/142 (5%) Frame = +3 Query: 6 NEAYKPQRPQGSNLQA----KPHVMLNKQSRPPSSDSGSIMRPMKAATQQKPIGEMKYKQ 173 +E+ P RPQ S+ ++ KP V ++ P + + ++KP + + Sbjct: 224 SESEDPPRPQASDSESEELPKPRVSDSESEDPQKGPASDSEAEDASRHKEKPDSDDSDGE 283 Query: 174 TQEHFGVERKPAMGHVDKSRLRAQPSAGVRLESAKPKTQDGLESNGRLEAAKRR----LQ 341 + + + GH D+ L + S + K + D E G E +R L Sbjct: 284 NKREDSEVQNESDGHTDRKGLHSSDSEEEEPKRQKIDSDDDEEKEGDEEKVAKRKAAVLS 343 Query: 342 ERYQEAENAKKQRTIQVMELGD 407 + +A NA +++ V + D Sbjct: 344 DSEDDAGNASAKKSRVVCDADD 365
>TIM_DROME (P49021) Protein timeless| Length = 1421 Score = 31.6 bits (70), Expect = 2.0 Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 9/160 (5%) Frame = +3 Query: 6 NEAYKPQRPQGSNLQAKPHVMLNKQSRPPSSDSGSIMRPMKAATQQKPIGEMKYKQTQEH 185 NE+ QGS + P ML SSD+GS R M ++ G Q Sbjct: 282 NESNTSPPKQGSG-DSSP--MLTSDPTSDSSDNGSNGRGMGGGMRE---GTAATLQEVSR 335 Query: 186 FGVERKPAMGHV--DKSRLRAQPSAGVRLESAKPKTQDGLESNGRL-------EAAKRRL 338 G E + AM V DK + S +S +P + + + G + R+L Sbjct: 336 KGQEYQNAMARVPADKPDGSEEASDMTGNDSEQPGSPEQSQPAGESMDDGDYEDQRHRQL 395 Query: 339 QERYQEAENAKKQRTIQVMELGDIPKPKSHTKQPMAKSRN 458 E +E E+ + + ++LG +P + T+QP K N Sbjct: 396 NEHGEEDEDEDEVEEEEYLQLGPASEPLNLTQQPADKVNN 435
>CCD21_HUMAN (Q6P2H3) Coiled-coil domain-containing protein 21| Length = 762 Score = 31.6 bits (70), Expect = 2.0 Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Frame = +3 Query: 174 TQEHFGVERKPAMGHVDKSRLRAQPSAGVRLESAKPKTQDGLESNGR---LEAAKRRLQE 344 ++E +E+K + V+ +R ++ S + K Q+ GR + K++ Q+ Sbjct: 406 SREKIDLEKKLSASEVEVQLIRESLKVALQKHSEEVKKQEE-RVKGRDKHINNLKKKCQK 464 Query: 345 RYQEAENAKKQRTIQVME--LGDIPKPKSHTKQPMAKSRNNIRSRVL 479 + +N +KQ+ I+ +E L D+P + H KQ + ++S L Sbjct: 465 --ESEQNREKQQRIETLERYLADLPTLEDHQKQSQQLKDSELKSTEL 509
>H12_ARATH (P26569) Histone H1.2| Length = 273 Score = 30.8 bits (68), Expect = 3.4 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = +3 Query: 198 RKPAMGHVDKSRLRAQPSAGVRLESAKPKTQD-GLESNGRLEAAKRRLQERYQEAENAKK 374 +KPA V K+++ A+P A ++ +AKPK++ S + AAK + +ER +A Sbjct: 174 KKPAAKVVAKAKVTAKPKA--KVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRT-S 230 Query: 375 QRTIQVMELGDIPKPKSHTKQPMAKS 452 RT ++ K + TK+ AKS Sbjct: 231 TRTSPGKKVAAPAKKVAVTKKAPAKS 256
>MYG_LOXAF (P02187) Myoglobin| Length = 153 Score = 30.8 bits (68), Expect = 3.4 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = +3 Query: 258 VRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSHTK- 434 VRL + P+T + + L+ + + +E+ KKQ + LG I K K H + Sbjct: 30 VRLFTGHPETLEKFDKFKHLKT-----EGEMKASEDLKKQGVTVLTALGGILKKKGHHEA 84 Query: 435 --QPMAKSRNNIRSRVLGRR*FLCDVFLHLMNCCH 533 QP+A+S + F+ D +H++ H Sbjct: 85 EIQPLAQSHATKHKIPIKYLEFISDAIIHVLQSKH 119
>MYG_ELEMA (P02186) Myoglobin| Length = 153 Score = 30.8 bits (68), Expect = 3.4 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = +3 Query: 258 VRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSHTK- 434 VRL + P+T + + L+ + + +E+ KKQ + LG I K K H + Sbjct: 30 VRLFTGHPETLEKFDKFKHLKT-----EGEMKASEDLKKQGVTVLTALGGILKKKGHHEA 84 Query: 435 --QPMAKSRNNIRSRVLGRR*FLCDVFLHLMNCCH 533 QP+A+S + F+ D +H++ H Sbjct: 85 EIQPLAQSHATKHKIPIKYLEFISDAIIHVLQSKH 119
>DLX3_NOTVI (P53770) Homeobox protein DLX-3 (Box-4) (NVHBOX-4)| Length = 273 Score = 30.4 bits (67), Expect = 4.4 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Frame = +3 Query: 147 PIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSAGVRLESAKPK---TQDGLESNGRL 317 P E Y +G R+PAM + ++ +P VR+ + KPK + S+ +L Sbjct: 78 PKSEYPYGGGYRQYGHYREPAMAVQEPVTVKEEPEPEVRMVNGKPKKIRKPRTIYSSYQL 137 Query: 318 EAAKRRLQE 344 A +RR Q+ Sbjct: 138 AALQRRFQK 146
>MK07_HUMAN (Q13164) Mitogen-activated protein kinase 7 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 5) (ERK-5) (ERK4) (BMK1 kinase) Length = 815 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +3 Query: 225 KSRLRAQPSAGVRL-ESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQR 380 +SRLR PSA + E KP T E E +RR QER +E E +++R Sbjct: 487 RSRLRDGPSAPLEAPEPRKPVTAQ--ERQREREEKRRRRQERAKEREKRRQER 537
>ATG2_KLULA (Q6CQ43) Autophagy-related protein 2| Length = 1502 Score = 30.0 bits (66), Expect = 5.7 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 4/96 (4%) Frame = +3 Query: 147 PIGEMKYKQTQEHFGVERKPAMGHVDKSRL-RAQPSAGVRLESAKPKTQDGLE---SNGR 314 P+ + +EHF ER+ + + KS + + + +E K K DG E + Sbjct: 922 PVSQGSVNFEEEHFSTERRTVVENDSKSSVFSILTTIKIHIEEVKLKLYDGYEWRHTRKE 981 Query: 315 LEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPK 422 +++A R+QE + + + + V + IP PK Sbjct: 982 IKSAVDRIQEDFNDGLELSETK---VFDSIYIPAPK 1014
>CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2 (EC 3.6.1.-)| (ATP-dependent helicase CHD2) (CHD-2) Length = 1739 Score = 30.0 bits (66), Expect = 5.7 Identities = 30/134 (22%), Positives = 54/134 (40%) Frame = +3 Query: 78 QSRPPSSDSGSIMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSAG 257 QS S +GS +P+ ++KP + + + E G +R R +PS Sbjct: 63 QSESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVYGVRRSNRSRQEPSRF 122 Query: 258 VRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSHTKQ 437 E A ++ G + KRR Q + ++ E K++ + E G +S +Q Sbjct: 123 NIKEEASSGSESG--------SPKRRGQRQLKKQEKWKQEPSEDEQEQG--TSAESEPEQ 172 Query: 438 PMAKSRNNIRSRVL 479 K+R + R + Sbjct: 173 KKVKARRPVPRRTV 186
>STP2_MACFA (Q8WNV1) Nuclear transition protein 2 (TP-2) (TP2)| Length = 141 Score = 30.0 bits (66), Expect = 5.7 Identities = 32/125 (25%), Positives = 44/125 (35%), Gaps = 2/125 (1%) Frame = +3 Query: 9 EAYKPQRPQG-SNLQAKPHVMLNKQS-RPPSSDSGSIMRPMKAATQQKPIGEMKYKQTQE 182 + + RPQ S H QS R S S AT Q P G Q Sbjct: 14 QLHSNSRPQSRSQCTCTHHCQTFSQSCRQSQRGSRSRSSSQSPATHQNPTGAHSSSGCQS 73 Query: 183 HFGVERKPAMGHVDKSRLRAQPSAGVRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAE 362 P H P+ L S+ PK + LE G+L K+++ +R Q+ Sbjct: 74 QSPNASPPPKRHKKTMNSHHSPTRPTILHSSCPKNRKNLE--GKLN--KKKMAKRIQQVY 129 Query: 363 NAKKQ 377 KK+ Sbjct: 130 KTKKR 134
>MPCP_HUMAN (Q00325) Phosphate carrier protein, mitochondrial precursor (PTP)| (Solute carrier family 25 member 3) Length = 362 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Frame = +3 Query: 225 KSRLRAQPSAGVRLESAKPKT--QDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVME 398 K R++ QP L A PK ++GL++ + A Q Y + A +RT++ + Sbjct: 187 KVRIQTQPGYANTLRDAAPKMYKEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALY 246 Query: 399 LGDIPKPKSHTKQP 440 +PKP+S +P Sbjct: 247 KFVVPKPRSECSKP 260
>MPCP_BOVIN (P12234) Phosphate carrier protein, mitochondrial precursor (PTP)| (Solute carrier family 25 member 3) Length = 362 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Frame = +3 Query: 225 KSRLRAQPSAGVRLESAKPKT--QDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVME 398 K R++ QP L A PK ++GL++ + A Q Y + A +RT++ + Sbjct: 187 KVRIQTQPGYANTLRDAAPKMYKEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALY 246 Query: 399 LGDIPKPKSHTKQP 440 +PKP+S +P Sbjct: 247 KFVVPKPRSECSKP 260
>MYSA_DROME (P05661) Myosin heavy chain, muscle| Length = 1962 Score = 30.0 bits (66), Expect = 5.7 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = +3 Query: 207 AMGHVDKSRLRAQPSAGVRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAE 362 A G D R ++ +A ++ +K ++ DG+ + LE AKR+LQ R EAE Sbjct: 1350 AEGKADLQRQLSKANAEAQVWRSKYES-DGVARSEELEEAKRKLQARLAEAE 1400
>STP2_MACMU (Q9N1A3) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 137 Score = 29.6 bits (65), Expect = 7.5 Identities = 27/101 (26%), Positives = 39/101 (38%) Frame = +3 Query: 75 KQSRPPSSDSGSIMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSA 254 +QS+ S S P AT Q P G Q P H P+ Sbjct: 43 RQSQRGSRSRSSSQSP---ATHQNPTGAHSSSGLQSQSPNASPPPKRHKKTMNSHHSPTR 99 Query: 255 GVRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQ 377 L S+ PK + LE G+L K+++ +R Q+ KK+ Sbjct: 100 PTILHSSCPKNRKNLE--GKLN--KKKMAKRIQQVYKTKKR 136
>SMC1A_MOUSE (Q9CU62) Structural maintenance of chromosome 1-like 1 protein| (SMC1alpha protein) (Chromosome segregation protein SmcB) (Sb1.8) Length = 1233 Score = 29.3 bits (64), Expect = 9.8 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Frame = +3 Query: 99 DSGSIMRPMKAATQQKPIG-EMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSAGVRLESA 275 D G + +K A ++ I EM Q + + ER+ + + ++A +LES Sbjct: 982 DYGDLCEDLKDAQAEEEIKQEMNTLQQKLN---ERQSVLQRIAAPNMKAME----KLESV 1034 Query: 276 KPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQR 380 + K Q E++ EAA++R ++ Q E KK+R Sbjct: 1035 RDKFQ---ETSDEFEAARKRAKKAKQAFEQIKKER 1066
>ICB1_HUMAN (Q5TEJ8) Induced by contact to basement membrane 1 protein (Protein| ICB-1) Length = 643 Score = 29.3 bits (64), Expect = 9.8 Identities = 18/86 (20%), Positives = 33/86 (38%) Frame = +3 Query: 231 RLRAQPSAGVRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDI 410 RLR P+ ++ +P GL Q R+ K + + + + + Sbjct: 538 RLRKLPACEIQAPPPRPPKNQGLSK-----------QRRHSSEGGVKSSQVLGLQQHARL 586 Query: 411 PKPKSHTKQPMAKSRNNIRSRVLGRR 488 PKPK+ T K ++ S++ R Sbjct: 587 PKPKAKTLPEFIKDGSSTYSKIPAHR 612
>HM2L1_HUMAN (Q9UGU5) High mobility group protein 2-like 1 (HMGBCG protein)| Length = 601 Score = 29.3 bits (64), Expect = 9.8 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = +3 Query: 222 DKSRLRAQPSAGVRLESAKP-KTQDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVME 398 D S+ SA + L +P + S G LEA + + + Y+E + KK + + + Sbjct: 270 DASQFAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKK 329 Query: 399 LGDIPKPKSHTK 434 + K K H+K Sbjct: 330 DKEKHKEKRHSK 341
>DLX3_PLEWA (Q91284) Distal-less-like protein DLX-3| Length = 274 Score = 29.3 bits (64), Expect = 9.8 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Frame = +3 Query: 147 PIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSAGVRLESAKPK---TQDGLESNGRL 317 P G Y+Q +G R+PAM + ++ +P VR+ + KPK + S+ +L Sbjct: 83 PYGGGGYRQ----YGHYREPAMAVQEPVTVKEEPEPEVRMVNGKPKKIRKPRTIYSSYQL 138 Query: 318 EAAKRRLQE 344 A +RR Q+ Sbjct: 139 AALQRRFQK 147
>CXCR3_BOVIN (Q5MD61) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)| (Interferon-inducible protein 10 receptor) (IP-10 receptor) Length = 366 Score = 29.3 bits (64), Expect = 9.8 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -3 Query: 224 IHMTHCRFSFDTEVFLSLFVLHLTDGFLL 138 ++ THC+++F E +L +L L GFLL Sbjct: 196 LNATHCQYNFPQEGHTALRILQLVAGFLL 224
>PCOA_ECOLI (Q47452) Copper resistance protein A precursor| Length = 605 Score = 29.3 bits (64), Expect = 9.8 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Frame = +3 Query: 246 PSAGVRLESAKPKTQD---GLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPK 416 P ++ S PK D GL +NGR L+ R+++ + + RTI++ G + K Sbjct: 443 PLVDMQAMSVSPKLNDPGIGLRNNGRKVLTYADLKSRFEDPDGREPGRTIELHLTGHMEK 502 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,695,183 Number of Sequences: 219361 Number of extensions: 2060890 Number of successful extensions: 6156 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 5884 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6147 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
