ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdh22 |
|---|---|
| Clone Library Name | barley_pub |
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 187 bits (476), Expect = 2e-47 Identities = 97/161 (60%), Positives = 116/161 (72%) Frame = +3 Query: 114 CGFPAIFNFGDSSSDTGAFPALFPAVQPPYGQTFFGMPAGRQSDGRLVIDFMAQNLGLRY 293 C FPAIFNFGDS+SDTG A F PP+G +FFG PAGR DGRLVIDF+A++LGL Y Sbjct: 26 CHFPAIFNFGDSNSDTGGLSAAFGQAGPPHGSSFFGSPAGRYCDGRLVIDFIAESLGLPY 85 Query: 294 LNAYLDSLGSNFTQGANFASAAGTIRRVNGSLWTSGYSPISLDVQLWQFQQFINRSRFVY 473 L+A+LDS+GSNF+ GANFA+A IR +N +L SG+SP SLDVQ QF F NRS+ V Sbjct: 86 LSAFLDSVGSNFSHGANFATAGSPIRALNSTLRQSGFSPFSLDVQFVQFYNFHNRSQTVR 145 Query: 474 NNIGGVYREILPNPEHLVSKALYTFKIGANDLAMGYLDNMT 596 + GGVY+ +LP + SKALYTF IG NDL GY N T Sbjct: 146 SR-GGVYKTMLPESDSF-SKALYTFDIGQNDLTAGYFANKT 184
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 171 bits (432), Expect = 2e-42 Identities = 92/181 (50%), Positives = 121/181 (66%), Gaps = 1/181 (0%) Frame = +3 Query: 48 NKLITFVVLLVVLEMVRSEDSPCGFPAIFNFGDSSSDTGAFPALFPAVQPPYGQTFFGMP 227 N +IT LL +L + + ++ C FPAIFNFGDS+SDTG A F + PPYG+TFF Sbjct: 9 NPIITLSFLLCMLSLAYASET-CDFPAIFNFGDSNSDTGGKAAAFYPLNPPYGETFFHRS 67 Query: 228 AGRQSDGRLVIDFMAQNLGLRYLNAYLDSLGSNFTQGANFASAAGTIRRVNGSLWT-SGY 404 GR SDGRL+IDF+A++ L YL+ YL SLGSNF GA+FA+A TI+ + G+ Sbjct: 68 TGRYSDGRLIIDFIAESFNLPYLSPYLSSLGSNFKHGADFATAGSTIKLPTTIIPAHGGF 127 Query: 405 SPISLDVQLWQFQQFINRSRFVYNNIGGVYREILPNPEHLVSKALYTFKIGANDLAMGYL 584 SP LDVQ QF+QFI RS+F+ GG++ E++P E+ KALYTF IG NDL G+L Sbjct: 128 SPFYLDVQYSQFRQFIPRSQFI-RETGGIFAELVPE-EYYFEKALYTFDIGQNDLTEGFL 185 Query: 585 D 587 + Sbjct: 186 N 186
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 52.4 bits (124), Expect = 1e-06 Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 16/169 (9%) Frame = +3 Query: 123 PAIFNFGDSSSDTGAFPALFPAVQP---PYGQTF-FGMPAGRQSDGRLVIDFMAQNLGLR 290 PA+F FGDS DTG L ++ PYG F F + GR S+G + D++A+ +G++ Sbjct: 203 PAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGVK 262 Query: 291 -YLNAYLDS--LGSNFTQGANFASAAGTIRRVNGSLWTSGYSPISLDV--------QLWQ 437 + AYLD ++ G +FAS +GY+P + + QL Sbjct: 263 EIVPAYLDPKIQPNDLLTGVSFASGG------------AGYNPTTSEAANAIPMLDQLTY 310 Query: 438 FQQFINR-SRFVYNNIGGVYREILPNPEHLVSKALYTFKIGANDLAMGY 581 FQ +I + +R V L L+SK + G+NDL + Y Sbjct: 311 FQDYIEKVNRLVRQEKSQYKLAGLEKTNQLISKGVAIVVGGSNDLIITY 359
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 48.1 bits (113), Expect = 2e-05 Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 14/170 (8%) Frame = +3 Query: 123 PAIFNFGDSSSDTGAFPALFPAVQ---PPYGQTF-FGMPAGRQSDGRLVIDFMAQNLGLR 290 PA+F FGDS DTG L ++ PYG F G+ GR S+GR+ D++++ LG++ Sbjct: 124 PAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGVK 183 Query: 291 -YLNAYLDS--------LGSNFTQGANFAS-AAGTIRRVNGSLWTSGYSPISLDVQLWQF 440 + AY+D S+ G +FAS AG + + + S + ++ QL F Sbjct: 184 EIVPAYVDKKLQQNNELQQSDLLTGVSFASGGAGYLPQTSES-----WKVTTMLDQLTYF 238 Query: 441 QQFINRSRFVYNNIGGVYREILPNPEHLVSKALYTFKIGANDLAMGYLDN 590 Q + R + + + +VSK G+NDL Y N Sbjct: 239 QDYKKRMKKLVGK---------KKTKKIVSKGAAIVVAGSNDLIYTYFGN 279
>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A| subunit (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2164 Score = 37.0 bits (84), Expect = 0.044 Identities = 25/82 (30%), Positives = 34/82 (41%) Frame = +2 Query: 347 RERRRNHQTGEREPVDLRVQPHFPGRAALAIPAVHQQEPLRLQQHRRSLPGDPAEPRAPG 526 +E R N+ R P LR P +E R RR+ PG P RAPG Sbjct: 781 QENRNNNTNKSRAPEALR-------------PTARPRESARDPDARRAWPGSPE--RAPG 825 Query: 527 LQGALHLQNRRQRPRHGLPRQH 592 +G ++ Q+ H PR+H Sbjct: 826 REGPYGRESELQQREHAPPREH 847
>PCHA_PSEAE (Q51508) Salicylate biosynthesis isochorismate synthase (EC| 5.4.4.2) (Isochorismate mutase) Length = 476 Score = 33.1 bits (74), Expect = 0.63 Identities = 21/49 (42%), Positives = 23/49 (46%) Frame = +2 Query: 416 PGRAALAIPAVHQQEPLRLQQHRRSLPGDPAEPRAPGLQGALHLQNRRQ 562 PG ALA+ A H LRL+Q R P P G QG Q RRQ Sbjct: 158 PGEDALALAAYHCSALLRLRQPARRRPSGP----TAGAQGDASAQERRQ 202
>F13B_HUMAN (P05160) Coagulation factor XIII B chain precursor| (Protein-glutamine gamma-glutamyltransferase B chain) (Transglutaminase B chain) (Fibrin-stabilizing factor B subunit) Length = 661 Score = 32.7 bits (73), Expect = 0.82 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = +3 Query: 51 KLITFVVLLVVLEMVRSEDSPCGFPAIFN 137 K +TF+++L++ + +E+ PCGFP + N Sbjct: 4 KNLTFIIILIISGELYAEEKPCGFPHVEN 32
>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) (SRECRP-1) Length = 866 Score = 32.7 bits (73), Expect = 0.82 Identities = 35/108 (32%), Positives = 43/108 (39%), Gaps = 2/108 (1%) Frame = +2 Query: 206 PDLLRHAGRAAERRPPRHRLHGSKPGATLPECVPGFTREQLHAGSQFRERRRNHQTGERE 385 P L A A PPR R G PG P G R A S Sbjct: 724 PGLPEEATALAAPSPPRARARGRGPGLLEPTDAGGPPRSAPEAASML------------- 770 Query: 386 PVDLRVQPHFPGRAALAIPAVHQQE-PLRLQQHRRSLPGDPAEP-RAP 523 +LR + GRA +A+ A +E P Q+ +RS+P PA P RAP Sbjct: 771 AAELRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSVP--PASPARAP 816
>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 4) (Brain calcium channel I) (BI) (RAT brain class A) (RBA-I) Length = 2212 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/82 (28%), Positives = 32/82 (39%) Frame = +2 Query: 347 RERRRNHQTGEREPVDLRVQPHFPGRAALAIPAVHQQEPLRLQQHRRSLPGDPAEPRAPG 526 +E R N+ R P LR +E R RR+ P P RAPG Sbjct: 829 QENRNNNTNKSRAPEALR-------------QTARPRESARDPDARRAWPSSPE--RAPG 873 Query: 527 LQGALHLQNRRQRPRHGLPRQH 592 +G ++ Q+ H PR+H Sbjct: 874 REGPYGRESEPQQREHAPPREH 895
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 31.6 bits (70), Expect = 1.8 Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 8/104 (7%) Frame = +2 Query: 248 PPRHRLHGSKPGATLPECVPGFTREQLHAGSQFRERRRNHQTGEREPVDLRVQ--PHFPG 421 PP+ HG P LP+ PG + +A + Q G+ P + Q P PG Sbjct: 1656 PPQQASHGGVPSPGLPQVGPGGMVKPPYAMPPPPSQGVGQQVGQGPPGGMMSQKPPPMPG 1715 Query: 422 RAALAIPAVHQQEPLRLQQHRRSLPGD------PAEPRAPGLQG 535 +A P + QQ P H P P APG G Sbjct: 1716 QAMQQQP-LQQQPPSHQHPHPHQHPQHQHPHQMPPNQTAPGGYG 1758 Score = 29.3 bits (64), Expect = 9.1 Identities = 33/148 (22%), Positives = 47/148 (31%), Gaps = 23/148 (15%) Frame = +2 Query: 221 HAGRAAERRPP-----RHRLHGSK---PGATLPECVPGFTREQLHAGSQFRERRRNHQTG 376 H + ++ PP + + HG P PE PG E H H Sbjct: 95 HLHQQQQQHPPPPHMQQQQHHGGPAPPPPGGAPEHAPGVKEEYTHLPPP-----HPHPAY 149 Query: 377 EREPVDLRVQPHFPGRAALAIPAVHQQEPLRLQQ---------------HRRSLPGDPAE 511 R D + P+ G+ QQ+P QQ +R +PG P + Sbjct: 150 GRYHADPNMDPYRYGQPLPGGKPPQQQQPHPQQQPPQQPGPGGSPNRPPQQRYIPGQPPQ 209 Query: 512 PRAPGLQGALHLQNRRQRPRHGLPRQHD 595 P L L N P+H +D Sbjct: 210 GPTPTLNSLLQSSNPPPPPQHRYANTYD 237
>COAA1_CHICK (P08125) Collagen alpha-1(X) chain precursor| Length = 674 Score = 31.2 bits (69), Expect = 2.4 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Frame = +2 Query: 350 ERRRNHQTGEREPVDL------RVQPHFPGRAALAIPAVHQQEPLRLQQHRRSLPGDPAE 511 ER N + GE PV L + P PG A L++ + Q R PG+ E Sbjct: 112 ERGLNGEKGEAGPVGLPGARGPQGPPGIPGPAGLSVLGKPGPQGPPGAQGPRGPPGEKGE 171 Query: 512 PRAPGLQG 535 P PG+ G Sbjct: 172 PGVPGING 179
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 31.2 bits (69), Expect = 2.4 Identities = 18/68 (26%), Positives = 30/68 (44%) Frame = +2 Query: 278 PGATLPECVPGFTREQLHAGSQFRERRRNHQTGEREPVDLRVQPHFPGRAALAIPAVHQQ 457 PGA P P QL ++ + T + P+++ ++P A + P QQ Sbjct: 435 PGAQAPLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNINLRPTTVSSATVQFPPRSQQ 494 Query: 458 EPLRLQQH 481 +PL+ QH Sbjct: 495 QPLQKMQH 502
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 31.2 bits (69), Expect = 2.4 Identities = 29/70 (41%), Positives = 32/70 (45%) Frame = +2 Query: 371 TGEREPVDLRVQPHFPGRAALAIPAVHQQEPLRLQQHRRSLPGDPAEPRAPGLQGALHLQ 550 TGE PV L VQP A A PAV PL LQQ + P P+AP Q A Q Sbjct: 561 TGEAAPV-LTVQP-----APQAPPAVSTPLPLGLQQPQAQQP-----PQAPTPQAAAPPQ 609 Query: 551 NRRQRPRHGL 580 +P GL Sbjct: 610 ATTPQPSPGL 619
>Y200_ANASP (Q8Z098) UPF0272 protein All0200| Length = 426 Score = 31.2 bits (69), Expect = 2.4 Identities = 22/84 (26%), Positives = 40/84 (47%) Frame = +3 Query: 255 VIDFMAQNLGLRYLNAYLDSLGSNFTQGANFASAAGTIRRVNGSLWTSGYSPISLDVQLW 434 ++D + LGL +L D+ G + F + GT+R +G + P+ ++LW Sbjct: 136 IVDIVGTCLGLDWLGIASDNAGFPLLYCSAFPTGGGTVRAAHGQMAV----PVPAVLKLW 191 Query: 435 QFQQFINRSRFVYNNIGGVYREIL 506 + R VY+N G+ RE++ Sbjct: 192 EM-----RGCPVYSN--GIDRELV 208
>PURQ_CORGL (Q8NMI4) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)| (FGAM synthase I) Length = 223 Score = 30.8 bits (68), Expect = 3.1 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 19/156 (12%) Frame = +3 Query: 123 PAIFNFGDSSSDTGAFPALFPAVQPPYGQTFFGMPA-----GRQ--SDGRLVIDFMAQNL 281 P F++GD TGA AL P +Q Q GMP G Q ++ RL+ + +N Sbjct: 49 PGGFSYGDYLR-TGAISALAPVMQSVIEQAGKGMPVLGICNGFQILTEARLLPGALTRNK 107 Query: 282 GLRY--LNAYLDSLGSNFTQGANFASAAGTI----RRVNGSLWTSGYSPISLDVQLWQFQ 443 GL + ++A+L + +N T N I + G + L+ + Sbjct: 108 GLHFHCVDAHL-VVENNTTAWTNTLEKGQQILIPAKHGEGRFQADAETIAQLEGEGRVVF 166 Query: 444 QFINRSRFVYNNIGGVYRE------ILPNPEHLVSK 533 ++ + N+I G+ E ++P+PEH V K Sbjct: 167 RYTDNFNGSVNDIAGITNETGRIVGLMPHPEHAVEK 202
>GCAT_AERHY (P10480) Phosphatidylcholine-sterol acyltransferase precursor (EC| 2.3.1.43) (Glycerophospholipid-cholesterol acyltransferase) (GCAT) Length = 335 Score = 30.8 bits (68), Expect = 3.1 Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 7/135 (5%) Frame = +3 Query: 63 FVVLLVVLEM-VRSEDSPCGFPAIFNFGDSSSDTGAFPAL---FPAVQPPYGQTFFGMPA 230 FV LL ++ + V++ DS F I FGDS SDTG + + PPY + Sbjct: 5 FVCLLGLVALTVQAADSRPAFSRIVMFGDSLSDTGKMYSKMRGYLPSSPPYYE------- 57 Query: 231 GRQSDGRLVIDFMAQNLGLRYLNAYLDSLGSNF--TQGANFASAAGTIRRVNGSLWTSGY 404 GR S+G + +L+ L + F AN A T N W Y Sbjct: 58 GRFSNGPV----------------WLEQLTNEFPGLTIANEAEGGPTAVAYNKISWNPKY 101 Query: 405 SPI-SLDVQLWQFQQ 446 I +LD ++ QF Q Sbjct: 102 QVINNLDYEVTQFLQ 116
>MAML3_HUMAN (Q96JK9) Mastermind-like protein 3 (Mam-3)| Length = 1133 Score = 30.8 bits (68), Expect = 3.1 Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 12/117 (10%) Frame = +2 Query: 269 GSKPGATLPECVPGF-------TREQLHAGSQFRERRRNHQTGEREPVD---LRVQPHFP 418 G P +T P PG T+ H N G R+P + + F Sbjct: 852 GLAPYSTTPTSQPGMYNMSTGMTQMLQHPNQSGMSITHNQAQGPRQPASGQGVGMVSGF- 910 Query: 419 GRAALAIPAVHQQEPLRLQQHRRSLPGDPAEPRAPGLQGALH--LQNRRQRPRHGLP 583 G++ L A+ QQ P ++LP A PR L G + Q+ +QR G+P Sbjct: 911 GQSMLVNSAITQQHPQMKGPVGQALPRPQAPPRLQSLMGTVQQGAQSWQQRSLQGMP 967
>CAC1B_MOUSE (O55017) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2327 Score = 30.8 bits (68), Expect = 3.1 Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 9/114 (7%) Frame = +2 Query: 233 AAERRPPRHRLH-----GSKPGATLPECVPGFTREQLHAGSQF--RERRRNHQTGEREPV 391 A ER P RHR H SK G T P VP R H G + RE N + R Sbjct: 919 ATEREPRRHRAHRHAQDSSKEG-TAPVLVPKGERRARHRGPRTGPREAENNEEPTRRHRA 977 Query: 392 DLRVQPHF--PGRAALAIPAVHQQEPLRLQQHRRSLPGDPAEPRAPGLQGALHL 547 +V P P R A + + + H+ P E A G LH+ Sbjct: 978 RHKVPPTLQPPEREAAEKESNAVEGDKETRNHQPKEPHCDLEAIAVTGVGPLHM 1031
>CAC1H_RAT (Q9EQ60) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2359 Score = 30.8 bits (68), Expect = 3.1 Identities = 12/31 (38%), Positives = 13/31 (41%) Frame = -2 Query: 125 REAARGIFGAHHF*YHQQHHERDEFVGGHGG 33 R A R HH YH HH + HGG Sbjct: 506 RRAGRRTASVHHLVYHHHHHHHHHYHFSHGG 536
>CAC1H_MOUSE (O88427) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2365 Score = 30.8 bits (68), Expect = 3.1 Identities = 12/31 (38%), Positives = 13/31 (41%) Frame = -2 Query: 125 REAARGIFGAHHF*YHQQHHERDEFVGGHGG 33 R A R HH YH HH + HGG Sbjct: 506 RRAGRRTASVHHLVYHHHHHHHHHYHFSHGG 536
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 30.4 bits (67), Expect = 4.1 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -2 Query: 95 HHF*YHQQHHERDEFVGGHGGATAS*NH 12 HH +HQ HH + GG G T+ +H Sbjct: 110 HHHHHHQSHHNNNNHSGGSSGGTSPTHH 137
>NR2F1_BRARE (Q06725) Nuclear receptor Nr2f1 (Steroid receptor homolog SVP 44)| Length = 411 Score = 30.4 bits (67), Expect = 4.1 Identities = 16/47 (34%), Positives = 18/47 (38%) Frame = +2 Query: 434 AIPAVHQQEPLRLQQHRRSLPGDPAEPRAPGLQGALHLQNRRQRPRH 574 A PA QQ+ H P P P PG G QN Q +H Sbjct: 27 AQPAREQQQAASAAPHTPQTPSQPGPPSTPGTAGDKGSQNSGQSQQH 73
>WASF3_MOUSE (Q8VHI6) Wiskott-Aldrich syndrome protein family member 3| (WASP-family protein member 3) (WAVE-3 protein) Length = 501 Score = 30.0 bits (66), Expect = 5.3 Identities = 23/72 (31%), Positives = 26/72 (36%) Frame = +2 Query: 368 QTGEREPVDLRVQPHFPGRAALAIPAVHQQEPLRLQQHRRSLPGDPAEPRAPGLQGALHL 547 QT P+ + QP FP A P Q L PG P P PG G L Sbjct: 356 QTAFVSPLQMPTQPPFPASAVSTYPTPPHQPSTGLLATAPPPPGPPPPP--PGPPGPSSL 413 Query: 548 QNRRQRPRHGLP 583 + P HG P Sbjct: 414 SS---SPMHGPP 422
>EMAP_STRPU (Q26613) 77 kDa echinoderm microtubule-associated protein| Length = 686 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -3 Query: 250 RPSLCRPAGMPKKVWP*GGCTAGKRAGKAPV--SEEESPKLKMAGKP 116 RPS RP + P GG GKR K P +EE ++ + G+P Sbjct: 23 RPSSARPGSGRTRASPRGGSAGGKRFSKEPQHNAEEGYVRIYLRGRP 69
>FOXK1_MOUSE (P42128) Forkhead box protein K1 (Myocyte nuclear factor) (MNF)| Length = 617 Score = 30.0 bits (66), Expect = 5.3 Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Frame = +2 Query: 371 TGEREPVDLRVQPHFP----GRAALAIPAVHQQEPLRLQQHRRSLPGDPAEPRAPGLQGA 538 +G R + LR P P AA A PA P + PG PA P PG GA Sbjct: 8 SGARALLALRSAPCSPVLCAAAAAAAFPATTSPPPAQPP------PGPPALPAEPGPGGA 61 Query: 539 L---HLQNRRQRP 568 L H + R RP Sbjct: 62 LHRRHCHHHRARP 74
>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Frame = +2 Query: 233 AAERRPPRHRL--HGSKPGATLPECVPGFTREQLHAGSQFRERRRNHQTGER 382 AAER P RHR HG PG P A ERR H+TG R Sbjct: 932 AAEREPRRHRAHRHGPDPGKEGP------------ASGTRGERRARHRTGPR 971
>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor| Length = 1745 Score = 30.0 bits (66), Expect = 5.3 Identities = 36/128 (28%), Positives = 48/128 (37%), Gaps = 25/128 (19%) Frame = +2 Query: 227 GRAAERRPPRHRLHGSKPGAT----------------------LP--ECVPGFTREQLHA 334 G ER PP R +PGAT LP + PGF + Sbjct: 827 GLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPP 886 Query: 335 GSQFRERRRNHQTGEREPVDLRVQPHFPGRAALAIPAVHQQEPLRL-QQHRRSLPGDPAE 511 G Q ++ R H G+R + + Q PG A + P E L ++ PG P E Sbjct: 887 GHQGKDGRPGHP-GQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGE 945 Query: 512 PRAPGLQG 535 PGL+G Sbjct: 946 QGLPGLEG 953
>HDAC6_HUMAN (Q9UBN7) Histone deacetylase 6 (HD6)| Length = 1215 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/25 (60%), Positives = 17/25 (68%) Frame = -2 Query: 278 VLSHEVDDEAAVALPPGRHAEEGLA 204 VLS EV + AAV PPG HAE+ A Sbjct: 593 VLSGEVLNGAAVVRPPGHHAEQDAA 617
>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 19) (Meltrin beta) (Metalloprotease and disintegrin dentritic antigen marker) (MADDAM) Length = 956 Score = 29.6 bits (65), Expect = 6.9 Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 2/128 (1%) Frame = +2 Query: 206 PDLLRHAGRAAERRPPRHRLHGSKPGATLPECVPGFTREQLHAGSQFRERRRNHQTGERE 385 P++LR + R PP + L G P A LP + R GSQ R Sbjct: 781 PEILRKPSQPPPRPPPDY-LRGGSPPAPLPAHLSRAARNSPGPGSQIERTE-----SSRR 834 Query: 386 PVDLRVQPHFPGRAALAIPAVHQQEPLRLQQHRRSLPGDPAEPR--APGLQGALHLQNRR 559 P R P P + Q+ R + +++LP +P R P GA L+ Sbjct: 835 PPPSRPIPPAPN-------CIVSQDFSRPRPPQKALPANPVPGRRSLPRPGGASPLRPPG 887 Query: 560 QRPRHGLP 583 P+ P Sbjct: 888 AGPQQSRP 895
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 29.6 bits (65), Expect = 6.9 Identities = 29/104 (27%), Positives = 35/104 (33%) Frame = +2 Query: 227 GRAAERRPPRHRLHGSKPGATLPECVPGFTREQLHAGSQFRERRRNHQTGEREPVDLRVQ 406 GR ER P PG P +PGF + H G RN + GE L+ + Sbjct: 237 GRPGERGLP------GPPGIKGPAGIPGFPGMKGHRGFD----GRNGEKGETGAPGLKGE 286 Query: 407 PHFPGRAALAIPAVHQQEPLRLQQHRRSLPGDPAEPRAPGLQGA 538 PG P R PG+ P PG GA Sbjct: 287 NGLPGENGAPGP-----------MGPRGAPGERGRPGLPGAAGA 319
>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related| protein) Length = 440 Score = 29.6 bits (65), Expect = 6.9 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +2 Query: 206 PDLLRHAGRAAERRPPRHRLHGSKP 280 P ++R+ R A PP +R+HGS+P Sbjct: 329 PPMIRNGARDAPPPPPPYRMHGSEP 353
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Frame = +2 Query: 383 EPVDLRVQPHFPGRAALAIPAVHQ---QEPLRLQQHRRSLPGDPAEPRA 520 +P + PH A ++ PA+H Q+P R +LP PA P A Sbjct: 841 QPPEHSTPPHLNQHAVVSPPALHNALPQQPSRPSNRAAALPPKPARPPA 889
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 29.3 bits (64), Expect = 9.1 Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 5/99 (5%) Frame = +2 Query: 275 KPGATLPECVPGFTREQLHAGSQFRERRRNHQTGEREPVDLRVQPH---FPGRAALAIP- 442 +PG P+ PG E+ G+ R G P R P FPG+ LA P Sbjct: 403 EPGPAGPQGAPGPAGEEGKRGA----RGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPK 458 Query: 443 -AVHQQEPLRLQQHRRSLPGDPAEPRAPGLQGALHLQNR 556 A ++ P L + + GDP P PGL GA L R Sbjct: 459 GAPGERGPSGLAGPKGA-NGDPGRPGEPGLPGARGLTGR 496
>ZDS1_YEAST (P50111) Protein ZDS1 (Protein NRC1) (RT2GS1)| Length = 915 Score = 29.3 bits (64), Expect = 9.1 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 1/116 (0%) Frame = +2 Query: 242 RRPPRHRLHGSKPGATLPECVPGF-TREQLHAGSQFRERRRNHQTGEREPVDLRVQPHFP 418 RR P H+ S ++ P P + +H + R+ ++ REPV+ V + P Sbjct: 587 RRKPHHKHDASSSPSSSPSSSPSIPNNDAVHV--RVRKSKKLGNKSGREPVEPIVLRNRP 644 Query: 419 GRAALAIPAVHQQEPLRLQQHRRSLPGDPAEPRAPGLQGALHLQNRRQRPRHGLPR 586 R + H + + ++ + S P P P L+GA+ ++ + + LP+ Sbjct: 645 -RPHRHHHSRHGSQKISVKTLKDSQPQQQI-PLQPQLEGAIEIEKKEESDSESLPQ 698
>COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor| Length = 680 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +2 Query: 407 PHFPGRAALAIPAVHQQEPLRLQQHRRSLPGDPAEPRAPGLQG 535 P PG A +++P Q+ L R PG+ APG+ G Sbjct: 144 PGIPGPAGISVPGKPGQQGLTGAPGPRGFPGEKGAQGAPGVNG 186
>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor| Length = 1691 Score = 29.3 bits (64), Expect = 9.1 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Frame = +2 Query: 278 PGATLPECVPGFTREQLHAGSQFRERRRNHQTGEREPVDLRVQPHFPGRAALAIPAVHQQ 457 PG P PG + + G F+ + GE+ L+ P PG+ + Q+ Sbjct: 200 PGLMGPPGPPGLPGPKGNMGLNFQGPK-----GEKGEQGLQGPPGPPGQIS------EQK 248 Query: 458 EPL--RLQQHRRSLPGDPAEPRAPGLQG 535 P+ Q+ + LPGD P PG++G Sbjct: 249 RPIDVEFQKGDQGLPGDRGPPGPPGIRG 276
>ZN553_HUMAN (Q96MX3) Zinc finger protein 553| Length = 618 Score = 29.3 bits (64), Expect = 9.1 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 3/96 (3%) Frame = +2 Query: 257 HRLHGSKPGATLPECVPGFTREQLHAGSQFRERRRNHQTGER---EPVDLRVQPHFPGRA 427 HR+H + PEC GF A S R + GER P ++PH P Sbjct: 470 HRVHTGEKPYLCPECGKGF------ADSSARVKHLRTHRGERARPPPPSTLLRPHNPPGP 523 Query: 428 ALAIPAVHQQEPLRLQQHRRSLPGDPAEPRAPGLQG 535 P+ + R+ P P++P G G Sbjct: 524 V----------PMAPRPRVRAQPSGPSQPHVCGFCG 549
>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related| protein) (WIP-and CR16-homologous protein) Length = 440 Score = 29.3 bits (64), Expect = 9.1 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +2 Query: 206 PDLLRHAGRAAERRPPRHRLHGSKP 280 P ++R+ R A PP +R+HGS+P Sbjct: 329 PPVIRNGARDAPPPPPPYRMHGSEP 353
>MRAW_BUCAI (P57319) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 312 Score = 29.3 bits (64), Expect = 9.1 Identities = 23/104 (22%), Positives = 48/104 (46%) Frame = +3 Query: 261 DFMAQNLGLRYLNAYLDSLGSNFTQGANFASAAGTIRRVNGSLWTSGYSPISLDVQLWQF 440 D +A ++G ++ + NF++ +FA I +VNG ++ G S I +D Sbjct: 57 DPIAFSIGSEIKDSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDY---- 112 Query: 441 QQFINRSRFVYNNIGGVYREILPNPEHLVSKALYTFKIGANDLA 572 R F + N G + ++ NP + +S + + F+ +++ Sbjct: 113 -----RRGFSFKNDGPL--DMRMNPNYGISASEWLFESNVKEIS 149
>LMBL3_MOUSE (Q8BLB7) Lethal(3)malignant brain tumor-like 3 protein| (L(3)mbt-like 3 protein) Length = 883 Score = 29.3 bits (64), Expect = 9.1 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 12/115 (10%) Frame = +2 Query: 281 GATLPECVPGFTREQ---LHAGSQFRERRRNHQTGEREPVDLRVQPHFPGRAALAI---- 439 G T P P F R + S E R H +E + + + A + Sbjct: 602 GDTSPPTTPSFPRSKRMDTRESSSSPETREKHANNFKEDSEKKKENEVKTSAEAKVVREE 661 Query: 440 --PAVHQQE-PLRLQQHRRSLPGDPAE--PRAPGLQGALHLQNRRQRPRHGLPRQ 589 P+V Q + P ++QQ + + P A+ P+A Q A Q Q P+ P+Q Sbjct: 662 PTPSVQQSQPPQQVQQVQHAQPPQQAQKAPQAQQAQQAQQAQQAPQAPQTPQPQQ 716
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 29.3 bits (64), Expect = 9.1 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Frame = +2 Query: 278 PGATLPECVPGFTREQLHAGSQFRERRRNHQTGEREPVDLRVQPHFPGRAALAIPAVHQQ 457 PG P PG + + G F+ + GE+ L+ P PG+ + Q+ Sbjct: 200 PGLMGPPGPPGLPGPKGNMGLNFQGPK-----GEKGEQGLQGPPGPPGQIS------EQK 248 Query: 458 EPL--RLQQHRRSLPGDPAEPRAPGLQG 535 P+ Q+ + LPGD P PG++G Sbjct: 249 RPIDVEFQKGDQGLPGDRGPPGPPGIRG 276 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,588,683 Number of Sequences: 219361 Number of extensions: 1728365 Number of successful extensions: 7381 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 6265 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7327 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
