ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdh09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468078.1| Oryza sativa (japonica cultivar-group), mRNA 137 4e-29
2ref|NM_195849.1| Oryza sativa (japonica cultivar-group) putative... 137 4e-29
3dbj|AK066876.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 4e-29
4gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nippon... 86 1e-13
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
8dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
9gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
10emb|AL354680.14| Human DNA sequence from clone RP11-536F8 on chr... 46 0.11
11gb|AC024797.1| Caenorhabditis elegans cosmid Y48G8AR, complete s... 42 1.7
12emb|Z69722.1|HSU212C1 Human DNA sequence from clone LL0XNC01-212... 42 1.7
13emb|BX649529.23| Zebrafish DNA sequence from clone DKEYP-74F1 in... 42 1.7
14emb|AL450321.15| Mouse DNA sequence from clone RP23-232M10 on ch... 42 1.7
15gb|AC106722.5| Homo sapiens 3 BAC RP11-107G13 (Roswell Park Canc... 42 1.7
16gb|AC007736.3| Homo sapiens BAC clone RP11-15J24 from 2, complet... 42 1.7
17gb|AC102178.21| Mus musculus chromosome 7, clone RP24-70C24, com... 42 1.7
18gb|AY109476.1| Zea mays CL1535_1 mRNA sequence 42 1.7
19gb|AF104924.2|AF104924 Zea mays unconventional myosin heavy chai... 42 1.7
20gb|AC161358.8| Mus musculus chromosome 18, clone wi1-1930A12, co... 40 6.9
21ref|NM_173310.2| Rattus norvegicus N-acetylgalactosamine 4-sulfa... 40 6.9
22gb|AC132581.4| Mus musculus BAC clone RP24-390D8 from chromosome... 40 6.9
23gb|AC125144.3| Mus musculus BAC clone RP24-346C2 from chromosome... 40 6.9
24gb|AC007006.3| Homo sapiens BAC clone RP11-548P6 from 2, complet... 40 6.9
25emb|BX510959.9| Zebrafish DNA sequence from clone CH211-51A19 in... 40 6.9
26gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 6.9 
>ref|XM_468078.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4569

 Score =  137 bits (69), Expect = 4e-29
 Identities = 180/217 (82%)
 Strand = Plus / Plus

                                                                        
Query: 66   ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 125
            |||||||||||| ||||| ||||| ||||||||||| ||||| |||| ||| ||||||||
Sbjct: 2415 ttcagcagctcttcttattcagtcctgtattcgaggatttatcgctcgccgttatttctc 2474

                                                                        
Query: 126  agccatcagggagcagaaggctgcgttaatgatacagtccttctggagaaaacggaaggt 185
            ||  ||||| |||||||| ||||| ||  |||||||||| || |||||||||||||||||
Sbjct: 2475 agttatcagagagcagaaagctgctttggtgatacagtcattgtggagaaaacggaaggt 2534

                                                                        
Query: 186  tgccatgcttttctagcgttacaagcaagccgctatagcaattcagtgtgcttggagaca 245
            |   || |||||| | |  |||| ||||||| || |   |||||||||||||||||||||
Sbjct: 2535 tataattcttttccaacaatacaggcaagccactgtgaaaattcagtgtgcttggagaca 2594

                                                 
Query: 246  aaagcttccaagaagggagctaaggaaactcagaatg 282
             || ||| ||||||| || ||||||| ||||| ||||
Sbjct: 2595 gaaacttgcaagaagagaactaaggagactcaaaatg 2631
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>ref|NM_195849.1| Oryza sativa (japonica cultivar-group) putative myosin heavy chain
            (OSJNBa0050M22.5), mRNA
          Length = 4806

 Score =  137 bits (69), Expect = 4e-29
 Identities = 180/217 (82%)
 Strand = Plus / Plus

                                                                        
Query: 66   ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 125
            |||||||||||| ||||| || || ||||||||||| ||||| |||| ||  ||||||||
Sbjct: 2652 ttcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccattatttctc 2711

                                                                        
Query: 126  agccatcagggagcagaaggctgcgttaatgatacagtccttctggagaaaacggaaggt 185
            ||  ||||  |||||||| ||||| ||  ||||||||||||| |||||||||||||||||
Sbjct: 2712 agttatcaaagagcagaaagctgctttggtgatacagtccttgtggagaaaacggaaggt 2771

                                                                        
Query: 186  tgccatgcttttctagcgttacaagcaagccgctatagcaattcagtgtgcttggagaca 245
            |  ||| |||||| | |  |||| ||||||| || | |||||||||||||||||||||||
Sbjct: 2772 tatcattcttttccaacaatacaggcaagccactgtggcaattcagtgtgcttggagaca 2831

                                                 
Query: 246  aaagcttccaagaagggagctaaggaaactcagaatg 282
             ||  || ||||||| || ||||||| ||||| ||||
Sbjct: 2832 gaaagttgcaagaagagaactaaggagactcaaaatg 2868
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>dbj|AK066876.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075D12, full
           insert sequence
          Length = 2491

 Score =  137 bits (69), Expect = 4e-29
 Identities = 180/217 (82%)
 Strand = Plus / Plus

                                                                       
Query: 66  ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 125
           |||||||||||| ||||| || || ||||||||||| ||||| |||| ||  ||||||||
Sbjct: 39  ttcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccattatttctc 98

                                                                       
Query: 126 agccatcagggagcagaaggctgcgttaatgatacagtccttctggagaaaacggaaggt 185
           ||  ||||  |||||||| ||||| ||  ||||||||||||| |||||||||||||||||
Sbjct: 99  agttatcaaagagcagaaagctgctttggtgatacagtccttgtggagaaaacggaaggt 158

                                                                       
Query: 186 tgccatgcttttctagcgttacaagcaagccgctatagcaattcagtgtgcttggagaca 245
           |  ||| |||||| | |  |||| ||||||| || | |||||||||||||||||||||||
Sbjct: 159 tatcattcttttccaacaatacaggcaagccactgtggcaattcagtgtgcttggagaca 218

                                                
Query: 246 aaagcttccaagaagggagctaaggaaactcagaatg 282
            ||  || ||||||| || ||||||| ||||| ||||
Sbjct: 219 gaaagttgcaagaagagaactaaggagactcaaaatg 255
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>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0050M22, from chromosome 10, complete sequence
          Length = 145417

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 103/123 (83%)
 Strand = Plus / Plus

                                                                         
Query: 160   cagtccttctggagaaaacggaaggttgccatgcttttctagcgttacaagcaagccgct 219
             |||||||| ||||||||||||||||||  ||| |||||| | |  |||| ||||||| ||
Sbjct: 29277 cagtccttgtggagaaaacggaaggttatcattcttttccaacaatacaggcaagccact 29336

                                                                         
Query: 220   atagcaattcagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactcaga 279
              | ||||||||||||||||||||||| ||  || ||||||| || ||||||| ||||| |
Sbjct: 29337 gtggcaattcagtgtgcttggagacagaaagttgcaagaagagaactaaggagactcaaa 29396

                
Query: 280   atg 282
             |||
Sbjct: 29397 atg 29399



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                         
Query: 66    ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 125
             |||||||||||| ||||| || || ||||||||||| ||||| |||| ||  ||||||||
Sbjct: 28919 ttcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccattatttctc 28978

                                                  
Query: 126   agccatcagggagcagaaggctgcgttaatgatacag 162
             ||  ||||  |||||||| ||||| ||  ||||||||
Sbjct: 28979 agttatcaaagagcagaaagctgctttggtgatacag 29015
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 103/123 (83%)
 Strand = Plus / Plus

                                                                           
Query: 160     cagtccttctggagaaaacggaaggttgccatgcttttctagcgttacaagcaagccgct 219
               |||||||| ||||||||||||||||||  ||| |||||| | |  |||| ||||||| ||
Sbjct: 9395793 cagtccttgtggagaaaacggaaggttatcattcttttccaacaatacaggcaagccact 9395852

                                                                           
Query: 220     atagcaattcagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactcaga 279
                | ||||||||||||||||||||||| ||  || ||||||| || ||||||| ||||| |
Sbjct: 9395853 gtggcaattcagtgtgcttggagacagaaagttgcaagaagagaactaaggagactcaaa 9395912

                  
Query: 280     atg 282
               |||
Sbjct: 9395913 atg 9395915



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                           
Query: 66      ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 125
               |||||||||||| ||||| || || ||||||||||| ||||| |||| ||  ||||||||
Sbjct: 9395435 ttcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccattatttctc 9395494

                                                    
Query: 126     agccatcagggagcagaaggctgcgttaatgatacag 162
               ||  ||||  |||||||| ||||| ||  ||||||||
Sbjct: 9395495 agttatcaaagagcagaaagctgctttggtgatacag 9395531
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 103/123 (83%)
 Strand = Plus / Plus

                                                                           
Query: 160     cagtccttctggagaaaacggaaggttgccatgcttttctagcgttacaagcaagccgct 219
               |||||||| ||||||||||||||||||  ||| |||||| | |  |||| ||||||| ||
Sbjct: 9401832 cagtccttgtggagaaaacggaaggttatcattcttttccaacaatacaggcaagccact 9401891

                                                                           
Query: 220     atagcaattcagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactcaga 279
                | ||||||||||||||||||||||| ||  || ||||||| || ||||||| ||||| |
Sbjct: 9401892 gtggcaattcagtgtgcttggagacagaaagttgcaagaagagaactaaggagactcaaa 9401951

                  
Query: 280     atg 282
               |||
Sbjct: 9401952 atg 9401954



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                           
Query: 66      ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 125
               |||||||||||| ||||| || || ||||||||||| ||||| |||| ||  ||||||||
Sbjct: 9401474 ttcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccattatttctc 9401533

                                                    
Query: 126     agccatcagggagcagaaggctgcgttaatgatacag 162
               ||  ||||  |||||||| ||||| ||  ||||||||
Sbjct: 9401534 agttatcaaagagcagaaagctgctttggtgatacag 9401570
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                            
Query: 66       ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 125
                |||||||||||| ||||| ||||| ||||||||||| ||||| |||| ||| ||||||||
Sbjct: 32925737 ttcagcagctcttcttattcagtcctgtattcgaggatttatcgctcgccgttatttctc 32925796

                                                     
Query: 126      agccatcagggagcagaaggctgcgttaatgatacag 162
                ||  ||||| |||||||| ||||| ||  ||||||||
Sbjct: 32925797 agttatcagagagcagaaagctgctttggtgatacag 32925833



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 100/123 (81%)
 Strand = Plus / Plus

                                                                            
Query: 160      cagtccttctggagaaaacggaaggttgccatgcttttctagcgttacaagcaagccgct 219
                ||||| || ||||||||||||||||||   || |||||| | |  |||| ||||||| ||
Sbjct: 32926105 cagtcattgtggagaaaacggaaggttataattcttttccaacaatacaggcaagccact 32926164

                                                                            
Query: 220      atagcaattcagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactcaga 279
                 |   ||||||||||||||||||||| || ||| ||||||| || ||||||| ||||| |
Sbjct: 32926165 gtgaaaattcagtgtgcttggagacagaaacttgcaagaagagaactaaggagactcaaa 32926224

                   
Query: 280      atg 282
                |||
Sbjct: 32926225 atg 32926227
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>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1534_E09
          Length = 126209

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                         
Query: 66    ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 125
             |||||||||||| ||||| ||||| ||||||||||| ||||| |||| ||| ||||||||
Sbjct: 80478 ttcagcagctcttcttattcagtcctgtattcgaggatttatcgctcgccgttatttctc 80537

                                                  
Query: 126   agccatcagggagcagaaggctgcgttaatgatacag 162
             ||  ||||| |||||||| ||||| ||  ||||||||
Sbjct: 80538 agttatcagagagcagaaagctgctttggtgatacag 80574



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 100/123 (81%)
 Strand = Plus / Plus

                                                                         
Query: 160   cagtccttctggagaaaacggaaggttgccatgcttttctagcgttacaagcaagccgct 219
             ||||| || ||||||||||||||||||   || |||||| | |  |||| ||||||| ||
Sbjct: 80846 cagtcattgtggagaaaacggaaggttataattcttttccaacaatacaggcaagccact 80905

                                                                         
Query: 220   atagcaattcagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactcaga 279
              |   ||||||||||||||||||||| || ||| ||||||| || ||||||| ||||| |
Sbjct: 80906 gtgaaaattcagtgtgcttggagacagaaacttgcaagaagagaactaaggagactcaaa 80965

                
Query: 280   atg 282
             |||
Sbjct: 80966 atg 80968
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>gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0011F12,
              complete sequence
          Length = 122262

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                          
Query: 66     ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 125
              |||||||||||| ||||| || || ||||||||||| ||||| |||| ||| ||||||||
Sbjct: 121199 ttcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccgttatttctc 121258

                               
Query: 126    agccatcagggagcaga 142
              ||  ||||| |||||||
Sbjct: 121259 agttatcagagagcaga 121275
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>emb|AL354680.14| Human DNA sequence from clone RP11-536F8 on chromosome 6p23-24.3
             Contains part of gene KIAA1733 and a CpG island, complete
             sequence
          Length = 194845

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 7     ataattcttcagaagtatgcaag 29
             |||||||||||||||||||||||
Sbjct: 32379 ataattcttcagaagtatgcaag 32357
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>gb|AC024797.1| Caenorhabditis elegans cosmid Y48G8AR, complete sequence
          Length = 46975

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 288   tgtatggaaagaagaaagata 308
             |||||||||||||||||||||
Sbjct: 19036 tgtatggaaagaagaaagata 19016
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>emb|Z69722.1|HSU212C1 Human DNA sequence from clone LL0XNC01-212C1 on chromosome X,
            complete sequence
          Length = 40714

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 157  atacagtccttctggagaaaa 177
            |||||||||||||||||||||
Sbjct: 6974 atacagtccttctggagaaaa 6994
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>emb|BX649529.23| Zebrafish DNA sequence from clone DKEYP-74F1 in linkage group 17,
             complete sequence
          Length = 216647

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 168   ctggagaaaacggaaggttgc 188
             |||||||||||||||||||||
Sbjct: 16660 ctggagaaaacggaaggttgc 16640
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>emb|AL450321.15| Mouse DNA sequence from clone RP23-232M10 on chromosome 13 Contains a
             novel gene, a non-POU domain containing octamer-binding
             protein (Nono) pseudogene, a Sin3-associated polypeptide
             18 (Sap18) pseudogene, the 5' end of a novel gene and a
             CpG island, complete sequence
          Length = 209175

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 253   ccaagaagggagctaaggaaactca 277
             |||||||||||| ||||||||||||
Sbjct: 43692 ccaagaagggagttaaggaaactca 43716
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>gb|AC106722.5| Homo sapiens 3 BAC RP11-107G13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 126781

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 288   tgtatggaaagaagaaagataggat 312
             ||||||||||||||||||| |||||
Sbjct: 87320 tgtatggaaagaagaaagaaaggat 87344
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>gb|AC007736.3| Homo sapiens BAC clone RP11-15J24 from 2, complete sequence
          Length = 172476

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 281    tgattcttgtatggaaagaagaaag 305
              ||||||||||||||| |||||||||
Sbjct: 106357 tgattcttgtatggacagaagaaag 106333
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>gb|AC102178.21| Mus musculus chromosome 7, clone RP24-70C24, complete sequence
          Length = 190370

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 34    ttactgttacagcagaattaccatg 58
             ||||||||||||||||| |||||||
Sbjct: 85511 ttactgttacagcagaagtaccatg 85487
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>gb|AY109476.1| Zea mays CL1535_1 mRNA sequence
          Length = 5375

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                             
Query: 229  cagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactca 277
            |||||||| ||||| |||| |||| | ||||||||||| ||||| ||||
Sbjct: 2955 cagtgtgcctggaggcaaaggcttgccagaagggagctcaggaagctca 3003
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>gb|AF104924.2|AF104924 Zea mays unconventional myosin heavy chain (MYO1) mRNA, complete cds
          Length = 5375

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                             
Query: 229  cagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactca 277
            |||||||| ||||| |||| |||| | ||||||||||| ||||| ||||
Sbjct: 2955 cagtgtgcctggaggcaaaggcttgccagaagggagctcaggaagctca 3003
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>gb|AC161358.8| Mus musculus chromosome 18, clone wi1-1930A12, complete sequence
          Length = 42218

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 286   cttgtatggaaagaagaaagatag 309
             ||||||||||| ||||||||||||
Sbjct: 18832 cttgtatggaaggaagaaagatag 18855
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>ref|NM_173310.2| Rattus norvegicus N-acetylgalactosamine 4-sulfate
            6-O-sulfotransferase (GalNAc4S6ST), mRNA
          Length = 4149

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   catgttcagcagctctgctt 81
            ||||||||||||||||||||
Sbjct: 1874 catgttcagcagctctgctt 1893
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>gb|AC132581.4| Mus musculus BAC clone RP24-390D8 from chromosome 6, complete sequence
          Length = 172240

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    tgtatggaaagaagaaagat 307
              ||||||||||||||||||||
Sbjct: 167284 tgtatggaaagaagaaagat 167303
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>gb|AC125144.3| Mus musculus BAC clone RP24-346C2 from chromosome 6, complete sequence
          Length = 171156

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   tgtatggaaagaagaaagat 307
             ||||||||||||||||||||
Sbjct: 64096 tgtatggaaagaagaaagat 64115
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>gb|AC007006.3| Homo sapiens BAC clone RP11-548P6 from 2, complete sequence
          Length = 112027

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   ttgtatggaaagaagaaaga 306
             ||||||||||||||||||||
Sbjct: 54237 ttgtatggaaagaagaaaga 54218
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>emb|BX510959.9| Zebrafish DNA sequence from clone CH211-51A19 in linkage group 20,
              complete sequence
          Length = 179085

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 26     caagaaggttactgttacagcaga 49
              |||||||||| |||||||||||||
Sbjct: 103772 caagaaggttcctgttacagcaga 103795
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 66      ttcagcagctctgcttatcc 85
               ||||||||||||||||||||
Sbjct: 3474669 ttcagcagctctgcttatcc 3474688


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,407,784
Number of Sequences: 3902068
Number of extensions: 4407784
Number of successful extensions: 80052
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79897
Number of HSP's gapped (non-prelim): 155
length of query: 508
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 486
effective length of database: 17,147,199,772
effective search space: 8333539089192
effective search space used: 8333539089192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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