ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdi10 |
|---|---|
| Clone Library Name | barley_pub |
>ZN580_MOUSE (Q9DB38) Zinc finger protein 580| Length = 172 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +2 Query: 170 IQCPENPRFPPQGSSTEGESGPK 238 +Q E PR PPQ +T GE GP+ Sbjct: 67 VQLEEEPRGPPQREATPGEPGPR 89
>MDLB_PSEPU (P20932) L(+)-mandelate dehydrogenase (EC 1.-.-.-) (S-mandelate| dehydrogenase) (MDH) Length = 393 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +2 Query: 98 ATAKAGVDEAEARMSA*VTKTLVRIQCPENPRFPPQGSSTEG 223 A + GVDE + A + +TL +I CP+ P EG Sbjct: 335 ARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNEG 376
>SPRT_VIBVY (Q7MHK4) Protein sprT| Length = 168 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 153 VTQADILASASSTPAFAVASL*GGTLPYRC 64 + Q L A++T FAVAS+ G T YRC Sbjct: 100 IMQGVFLLPANTTHQFAVASVQGKTFQYRC 129
>SPRT_VIBVU (Q8DCA5) Protein sprT| Length = 168 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 153 VTQADILASASSTPAFAVASL*GGTLPYRC 64 + Q L A++T FAVAS+ G T YRC Sbjct: 100 IMQGVFLLPANTTHQFAVASVQGKTFQYRC 129
>VL2_HPV58 (P26538) Minor capsid protein L2| Length = 472 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -3 Query: 357 VSLNL*PSFG*PSLLRPSVPTRGSTGILTCCPSTT 253 VS +L PSF PS+LRP P S ++ P+ + Sbjct: 155 VSTHLNPSFTEPSVLRPPAPAEASGHLIFSSPTVS 189
>GP176_MOUSE (Q80WT4) Probable G-protein coupled receptor 176 (G-protein coupled| receptor AGR9) Length = 515 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Frame = +2 Query: 119 DEAEARM--SA*VTKTLVRIQCPENPRFPPQGSSTEGESGPKIRPKGVVDGQQVNIPVLP 292 +E+EA+ SA V CPE + PPQ P + P G VD + PV P Sbjct: 387 EESEAKYLGSADFQAKEVLTSCPEGEQEPPQ-------LAPSVPPPGTVDSEPRVSPVAP 439 Query: 293 L 295 + Sbjct: 440 M 440
>NUP62_HUMAN (P37198) Nuclear pore glycoprotein p62 (62 kDa nucleoporin)| Length = 522 Score = 28.1 bits (61), Expect = 5.2 Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 23/116 (19%) Frame = -3 Query: 351 LNL*PSFG*PSLLRPSVPTRGSTGI-------LTCCPSTTPFGLILGPDSPSV------- 214 LNL + P++ PS GS+ + +T T P G + GP + SV Sbjct: 97 LNLSNTAATPAMANPSGFGLGSSNLTNAISSTVTSSQGTAPTGFVFGPSTTSVAPATTSG 156 Query: 213 ---------DEPCGGNLGFSGHWILTNVFVTQADILASASSTPAFAVASL*GGTLP 73 +P G N+G +G+ Q A+ TPA A+ G T P Sbjct: 157 GFSFTGGSTAQPSGFNIGSAGN-------SAQPTAPATLPFTPATPAATTAGATQP 205
>PCDG7_PANTR (Q5DRB3) Protocadherin gamma A7 precursor (PCDH-gamma-A7)| Length = 932 Score = 28.1 bits (61), Expect = 5.2 Identities = 28/98 (28%), Positives = 41/98 (41%) Frame = -3 Query: 324 PSLLRPSVPTRGSTGILTCCPSTTPFGLILGPDSPSVDEPCGGNLGFSGHWILTNVFVTQ 145 P +L P++PT GSTG+ S P L+ +VD+ G N W+ Sbjct: 560 PEILYPALPTDGSTGMELAPRSAEPGYLV--TKVVAVDKDSGQNA-----WL-------- 604 Query: 144 ADILASASSTPAFAVASL*GGTLPYRCILTSHSFGRSL 31 + +L AS FAV G R +L + +SL Sbjct: 605 SYLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSL 642
>PCDG7_HUMAN (Q9Y5G6) Protocadherin gamma A7 precursor (PCDH-gamma-A7)| Length = 932 Score = 28.1 bits (61), Expect = 5.2 Identities = 28/98 (28%), Positives = 41/98 (41%) Frame = -3 Query: 324 PSLLRPSVPTRGSTGILTCCPSTTPFGLILGPDSPSVDEPCGGNLGFSGHWILTNVFVTQ 145 P +L P++PT GSTG+ S P L+ +VD+ G N W+ Sbjct: 560 PEILYPALPTDGSTGMELAPRSAEPGYLV--TKVVAVDKDSGQNA-----WL-------- 604 Query: 144 ADILASASSTPAFAVASL*GGTLPYRCILTSHSFGRSL 31 + +L AS FAV G R +L + +SL Sbjct: 605 SYLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSL 642
>ZN580_HUMAN (Q9UK33) Zinc finger protein 580 (LDL-induced EC protein)| Length = 172 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 170 IQCPENPRFPPQGSSTEGESGPK 238 +Q E PR PPQ + GE GP+ Sbjct: 67 VQLEEEPRGPPQREAPPGEPGPR 89
>GUN9_ARATH (Q9C9H5) Probable family 9 endoglucanase At1g71380 precursor (EC| 3.2.1.4) Length = 484 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = -3 Query: 324 PSLLRPSVPTRGSTGILTCCPSTTPFGLILGPDSPSVDEPC 202 P L V R +T L C TP L +G P+VD C Sbjct: 105 PELENARVNIRWATDYLLKCARATPGKLYVGVGDPNVDHKC 145
>VL2_HPV32 (P36757) Minor capsid protein L2| Length = 476 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -3 Query: 339 PSFG*PSLLRPSVPTRGSTGILTCCPSTTP 250 P + P LRPS+P G+ +LT P+ P Sbjct: 164 PVYSDPFTLRPSLPVEGNGRLLTSHPTIAP 193
>PCDGB_PANTR (Q5DRC0) Protocadherin gamma A11 precursor (PCDH-gamma-A11)| Length = 935 Score = 27.7 bits (60), Expect = 6.8 Identities = 28/98 (28%), Positives = 38/98 (38%) Frame = -3 Query: 324 PSLLRPSVPTRGSTGILTCCPSTTPFGLILGPDSPSVDEPCGGNLGFSGHWILTNVFVTQ 145 P +L P++PT GSTG+ S P L+ +VD+ G N S Sbjct: 561 PEILYPALPTDGSTGVELAPRSAEPGYLV--TKVVAVDKDSGQNAWLSYR---------- 608 Query: 144 ADILASASSTPAFAVASL*GGTLPYRCILTSHSFGRSL 31 L AS FAV G R +L + +SL Sbjct: 609 ---LLKASEPGLFAVGEHTGEVRTARALLDRDALKQSL 643
>PCDGB_HUMAN (Q9Y5H2) Protocadherin gamma A11 precursor (PCDH-gamma-A11)| Length = 935 Score = 27.7 bits (60), Expect = 6.8 Identities = 28/98 (28%), Positives = 38/98 (38%) Frame = -3 Query: 324 PSLLRPSVPTRGSTGILTCCPSTTPFGLILGPDSPSVDEPCGGNLGFSGHWILTNVFVTQ 145 P +L P++PT GSTG+ S P L+ +VD+ G N S Sbjct: 561 PEILYPALPTDGSTGVELAPRSAEPGYLV--TKVVAVDKDSGQNAWLSYR---------- 608 Query: 144 ADILASASSTPAFAVASL*GGTLPYRCILTSHSFGRSL 31 L AS FAV G R +L + +SL Sbjct: 609 ---LLKASEPGLFAVGEHTGEVRTARALLDRDALKQSL 643
>PIGU_SCHPO (O13883) GPI transamidase component GAB1 homolog| Length = 408 Score = 27.7 bits (60), Expect = 6.8 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Frame = -3 Query: 291 GSTGILTCCPSTTPF----GLILGPDSPSVDEPCGGNLGFSGHWILTNVFVTQADILASA 124 GS I CC + T F L+L S + C ++ F +FV LA Sbjct: 165 GSYAIYACCMALTVFINPNALLLFFPSYLILRKCNSSIKFR------QIFVVFLFYLAGL 218 Query: 123 SSTPAFAVASL*GGTLPYRCILTSHSFGRSL 31 T F + SL +P+R L SH +L Sbjct: 219 IITSGFFLNSLSFLKIPFRVYLDSHDLTPNL 249
>PYRD_FUSNN (Q8RG85) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 304 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +2 Query: 158 TLVRIQCPENPRFPPQGSSTEGESGPKIRPKGV----VDGQQVNIPVLPLVG 301 TLV I P ++T G SGP IRP + Q VNIP++ + G Sbjct: 194 TLVGIVLDRKTGKPIIANTTGGLSGPAIRPVAIRMVYQVAQAVNIPIIGMGG 245
>THIE_STRAW (Q82AF9) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 215 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = +1 Query: 163 GENPMPRKPKVSSARFVHGG*VRA*DQAERRSRWTTGQYSCTTPCWYGGTEEARLA 330 G+ P+P + A + G A +AE + Y CT PCW T+ R A Sbjct: 94 GDLPVPAARAILGADVLIGRSTHAEAEAEAAAVQEGVDYFCTGPCWPTPTKPGRHA 149
>ZNF7_HUMAN (P17097) Zinc finger protein 7 (Zinc finger protein KOX4) (Zinc| finger protein HF.16) Length = 686 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -3 Query: 84 GTLPYRCILTSHSFGRSLSPVHXQR 10 G PYRC +FG+S S +H QR Sbjct: 302 GEKPYRCEECGKAFGQSSSLIHHQR 326
>PCDGA_PANTR (Q5DRC1) Protocadherin gamma A10 precursor (PCDH-gamma-A10)| Length = 936 Score = 27.3 bits (59), Expect = 8.9 Identities = 28/98 (28%), Positives = 37/98 (37%) Frame = -3 Query: 324 PSLLRPSVPTRGSTGILTCCPSTTPFGLILGPDSPSVDEPCGGNLGFSGHWILTNVFVTQ 145 P +L P++PT GSTG+ S P L+ +VD G N S Sbjct: 564 PEILYPALPTDGSTGVELAPRSAEPGYLV--TKVVAVDRDSGQNAWLSYR---------- 611 Query: 144 ADILASASSTPAFAVASL*GGTLPYRCILTSHSFGRSL 31 L AS FAV G R +L + +SL Sbjct: 612 ---LLKASEPGLFAVGEHTGEVRTARALLDRDALKQSL 646
>PCDGA_HUMAN (Q9Y5H3) Protocadherin gamma A10 precursor (PCDH-gamma-A10)| Length = 936 Score = 27.3 bits (59), Expect = 8.9 Identities = 28/98 (28%), Positives = 37/98 (37%) Frame = -3 Query: 324 PSLLRPSVPTRGSTGILTCCPSTTPFGLILGPDSPSVDEPCGGNLGFSGHWILTNVFVTQ 145 P +L P++PT GSTG+ S P L+ +VD G N S Sbjct: 564 PEILYPALPTDGSTGVELAPRSAEPGYLV--TKVVAVDRDSGQNAWLSYR---------- 611 Query: 144 ADILASASSTPAFAVASL*GGTLPYRCILTSHSFGRSL 31 L AS FAV G R +L + +SL Sbjct: 612 ---LLKASEPGLFAVGEHTGEVRTARALLDRDALKQSL 646
>MAP1A_HUMAN (P78559) Microtubule-associated protein 1A (MAP 1A)| (Proliferation-related protein p80) [Contains: MAP1 light chain LC2] Length = 2805 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +2 Query: 176 CPENPRFPPQGSSTEGESGPKIRPKGVVDGQQVNIPVLPLVGTEGRRRLG*P 331 C PR P +G + P + P +D + ++ + LVG GRRR+G P Sbjct: 2437 CXTEPR-PHRGELSPSFLNPPLPPS--IDDRDLSTEEVRLVGRGGRRRVGGP 2485 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,523,683 Number of Sequences: 219361 Number of extensions: 1146639 Number of successful extensions: 2964 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2833 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2964 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
