ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdi23 |
|---|---|
| Clone Library Name | barley_pub |
>DED1_GIBZE (Q4I7K4) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 675 Score = 34.3 bits (77), Expect = 0.073 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +1 Query: 271 PTRSSYVPPHLRGGGRSPDNQVLAAG-PTPAGAYPSGAVQPSG 396 P SY+PPH+RG G P A G P G P+ A P+G Sbjct: 21 PQGRSYIPPHMRGRGGPPPAGPQAGGPPVMNGGPPAAAPGPNG 63
>IF2_DESVH (Q72ER1) Translation initiation factor IF-2| Length = 1079 Score = 33.5 bits (75), Expect = 0.12 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +1 Query: 307 GGGRSPDNQVLAAGPTPAGAYPSGAVQPSGGY 402 GG P+ GP P G Y GA +P GGY Sbjct: 331 GGAPRPEGGYRPGGPRPEGGYRPGAPRPEGGY 362
>TS101_RAT (Q6IRE4) Tumor susceptibility gene 101 protein| Length = 391 Score = 32.3 bits (72), Expect = 0.28 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +1 Query: 265 SRPTRSSYVPPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGGY 402 SRPT S+ PP+ G P+ L + P+ AYPSG GY Sbjct: 143 SRPTVSASYPPYTAAG--PPNTSYLPSMPSGISAYPSGYPPNPSGY 186
>KPC1_COCHE (O42632) Protein kinase C-like (EC 2.7.11.13)| Length = 1174 Score = 30.8 bits (68), Expect = 0.80 Identities = 19/48 (39%), Positives = 21/48 (43%) Frame = +1 Query: 256 HXNSRPTRSSYVPPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGG 399 H +P PP G+SP GPTPAG P GA QP G Sbjct: 363 HTGIQPDMQFQPPP-----GQSPAGGP-GGGPTPAGVRPPGAPQPQTG 404
>TS101_MOUSE (Q61187) Tumor susceptibility gene 101 protein| Length = 391 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = +1 Query: 265 SRPTRSSYVPPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGGY 402 SRPT S+ PP+ G P+ + P+ AYPSG GY Sbjct: 143 SRPTVSASYPPYTATG--PPNTSYMPGMPSGISAYPSGYPPNPSGY 186
>AF10_HUMAN (P55197) Protein AF-10| Length = 1027 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +1 Query: 307 GGGRSPDNQVLAAGPTPAGAYPS--GAVQPSGG 399 GGGR+P V AA P P G++ G+V+ S G Sbjct: 333 GGGRNPGTTVSAASPFPQGSFSGTPGSVKSSSG 365
>DED1_ASPOR (Q2UGK3) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)| Length = 675 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +1 Query: 277 RSSYVPPHL--RGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGG 399 R++Y+PPHL R G + D AA P P + P + GG Sbjct: 26 RAAYIPPHLRQRQTGANMDGAPAAAPPAPGPSGPGNSWGSRGG 68
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +1 Query: 274 TRSSYVPPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGGY 402 T +++ HLRG GR+ V A PT AYP G V G Y Sbjct: 276 TAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYP-GVVYQDGFY 317
>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific| SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase complex subunit SET1) (SET-domain-containing protein 1A) Length = 1707 Score = 29.3 bits (64), Expect = 2.3 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 14/56 (25%) Frame = +1 Query: 265 SRPTRSSYVPPHLR--------------GGGRSPDNQVLAAGPTPAGAYPSGAVQP 390 SRPT Y PP GGG SP+ + + P PA SG+ P Sbjct: 418 SRPTDQDYRPPASEAPPPEPPEPGGGGGGGGPSPEREEVRTSPRPASPARSGSPAP 473
>DED1_NEUCR (Q9P6U9) ATP-dependent RNA helicase ded-1 (EC 3.6.1.-)| Length = 688 Score = 29.3 bits (64), Expect = 2.3 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 17/59 (28%) Frame = +1 Query: 277 RSSYVPPHLRG--GGRSP---------------DNQVLAAGPTPAGAYPSGAVQPSGGY 402 R SY+PPHLRG G +P +N A GP G +P+ P G+ Sbjct: 31 RRSYIPPHLRGKMGDAAPPMAGPNGLNNSAWAGNNNYDARGPGGGGNWPAPGGPPGPGF 89
>DED1_CRYNE (Q5KN36) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)| Length = 637 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +1 Query: 262 NSRPTRSSYVPPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPS 393 + +P + +YVPPHLR +P V A P P+G P+ Sbjct: 22 SQKPQKPAYVPPHLRNRA-APPAAVPPAAPAAYRPSPTGLPTPA 64
>GRASP_RAT (Q8R4T5) General receptor for phosphoinositides 1-associated| scaffold protein (GRP1-associated scaffold protein) (Tamalin) (95 kDa postsynaptic density protein discs-large ZO-1 domain-containing protein) (PSD-95 PDZ domain-containing protein) Length = 394 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +1 Query: 313 GRSPDNQVLAAGPTPAGAYPSGAVQPSG 396 GR+PD++ A PTP+G P A P G Sbjct: 23 GRAPDSEAARAAPTPSG--PPAAAAPPG 48
>YNL5_CAEEL (Q21955) Hypothetical protein R12B2.5| Length = 780 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +1 Query: 307 GGGRSPDNQVLAAGPTPAG--AYPSGAVQPSGGYA 405 GG +P +Q GPTPA +P+G+ Q +GG A Sbjct: 175 GGQITPGSQAPGGGPTPAPNVPFPNGSSQMNGGPA 209
>VL2_PAPVD (P03110) Minor capsid protein L2| Length = 493 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Frame = +1 Query: 256 HXNSRPTRSSYVPPHLRGGGRSPDNQVLAAGPTP------AGAYPSGAVQPSGGY 402 H + RPT+ YVP LRGGG S +G + AG P ++ G + Sbjct: 56 HGSGRPTQGGYVP--LRGGGSSTSLSSRGSGSSTSISRPFAGGIPLETLETVGAF 108
>DED1_CANAL (Q5A4E2) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 672 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Frame = +1 Query: 268 RPTRSSYVPPHLRG--GGRSPDNQVLAAGPTPAGAYPSGAVQPSG 396 R RS YVPPHLR GG + + P G G +G Sbjct: 27 RGGRSQYVPPHLRNRQGGGNQSGSSSESSDVPFGGSQRGGFNSNG 71
>CUT2_CAEEL (P34682) Cuticlin-2 precursor| Length = 231 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/37 (40%), Positives = 16/37 (43%) Frame = +1 Query: 295 PHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGGYA 405 P L GG P A PAG Y + P GGYA Sbjct: 61 PSLGGGCGGPAPCAAAPIAAPAGGYATAPAAPVGGYA 97
>DED1_CANGA (Q8TFK8) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 617 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +1 Query: 277 RSSYVPPHLR-GGGRSPDNQVLAAGPTPAGAYPSG 378 R YVPPH+R GGGR D+ P G + +G Sbjct: 17 RGGYVPPHIRNGGGRRGDS-------APRGGFNNG 44
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/43 (32%), Positives = 17/43 (39%) Frame = +1 Query: 268 RPTRSSYVPPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSG 396 RP + P R G SP A PA + P G + P G Sbjct: 253 RPAAGAATPKSCRSGAASPGAPAPAPASAPAPSRPGGGLLPPG 295
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/43 (32%), Positives = 17/43 (39%) Frame = +1 Query: 268 RPTRSSYVPPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSG 396 RP + P R G SP A PA + P G + P G Sbjct: 253 RPAAGAATPKSCRSGAASPGAPAPAPASAPAPSRPGGGLLPPG 295
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/43 (32%), Positives = 17/43 (39%) Frame = +1 Query: 268 RPTRSSYVPPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSG 396 RP + P R G SP A PA + P G + P G Sbjct: 253 RPAAGAATPKSCRSGAASPGAPAPAPASAPAPSRPGGGLLPPG 295
>ZSWM5_HUMAN (Q9P217) Zinc finger SWIM domain-containing protein 5| Length = 1185 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = -2 Query: 398 PPEGCTAPEGYAPAGVGPAAS 336 PP G AP G AP GV AS Sbjct: 141 PPPGAAAPAGSAPGGVAAGAS 161
>GATA6_MOUSE (Q61169) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 444 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = +1 Query: 295 PHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGG 399 P+L+G G P N AG P + S P GG Sbjct: 56 PYLQGAGSGPSNHAGGAGAHPGWSQASADSPPYGG 90
>ENC_DROME (Q8MSX1) Protein encore| Length = 1818 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = +1 Query: 292 PPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGG 399 PP L GGG P+ + A +G QP GG Sbjct: 1667 PPSLYGGGGGPNAGISGGAGASGAAGSNGGHQPGGG 1702
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/41 (39%), Positives = 19/41 (46%) Frame = +1 Query: 280 SSYVPPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGGY 402 ++Y HLRG GR+ N AA P P G V G Y Sbjct: 264 AAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFY 304
>DAAM1_MOUSE (Q8BPM0) Disheveled-associated activator of morphogenesis 1| Length = 1071 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 2/38 (5%) Frame = +1 Query: 292 PPHLRGGGRSPDNQVLAAG--PTPAGAYPSGAVQPSGG 399 PP L GG P L AG P P G P G V P G Sbjct: 554 PPLLSGGALPPPPPPLPAGGPPPPPGPPPLGGVLPPPG 591
>DED1_ASPFU (Q4WP13) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)| Length = 674 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Frame = +1 Query: 277 RSSYVPPHLRGGGRSPDNQVLAA---GPTP-AGAYPSGAVQPSGG 399 R++Y+PPHLR + AA GP P AGA+ P GG Sbjct: 27 RAAYIPPHLRQRTMGANVDGAAASPPGPAPGAGAWNGPRNAPRGG 71
>DED1_KLULA (Q6CLR3) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 627 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = +1 Query: 265 SRPTRSSYVPPHLRGGGRSPDNQVLAAGPTPAGAYPS--GAVQPSGGYA 405 S +R SYVPPH+RG RS G S G + GGY+ Sbjct: 22 SGDSRRSYVPPHVRGQQRSGSGNYRGRSDNFGGNERSFFGNERRGGGYS 70
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/41 (39%), Positives = 19/41 (46%) Frame = +1 Query: 280 SSYVPPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGGY 402 ++Y HLRG GR+ N AA P P G V G Y Sbjct: 265 AAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFY 305
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +1 Query: 271 PTRSSYVPPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSG 396 P + S P G R+ ++ AGPT P+G+ +P+G Sbjct: 298 PQQGSTHTPRSPGSTRTRRPEISQAGPTQGEVIPTGSSKPAG 339
>FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)| Length = 694 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/38 (44%), Positives = 17/38 (44%) Frame = +1 Query: 292 PPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGGYA 405 PPH RGGGR AA P G A P GG A Sbjct: 190 PPH-RGGGRGGGGGDAAAPPARGGGGGGKARPPGGGAA 226
>MYOD_DICDI (P34109) Myosin ID heavy chain| Length = 1109 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = +1 Query: 262 NSRPTRSSYVPPHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGGYA 405 ++ P+ PP RGG +P +A + G P G + P GG A Sbjct: 1054 STAPSGRGAAPPSSRGG-MAPRGGSVAPPSSRGGIAPRGGIAPRGGMA 1100
>MTPC1_ARATH (Q8L725) Metal tolerance protein C1 (AtMTPc1)| Length = 471 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -3 Query: 358 LVLGLQLAPDYLASGHHHG 302 L + L AP+ + SGHHHG Sbjct: 169 LSIALSAAPEVIHSGHHHG 187
>AF10_MOUSE (O54826) Protein AF-10| Length = 1068 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%) Frame = +1 Query: 307 GGGRSPDNQVLAAGPTPAGAY---PSGAVQPSG 396 G GR+P V A+ P P G++ P PSG Sbjct: 333 GAGRNPGTAVSASSPFPQGSFSGTPGSVKSPSG 365
>UL11_HHV11 (P04289) Myristoylated tegument protein UL11| Length = 95 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 9/44 (20%) Frame = +1 Query: 286 YVPPHLRGGGRSPDNQVLAAGP---------TPAGAYPSGAVQP 390 YVPP +RG R+P Q L + TP GA P+ P Sbjct: 46 YVPPDMRGVTRAPGRQRLRSSDPPSRHTHRRTPGGACPATQFPP 89
>GATA6_RAT (P46153) Transcription factor GATA-6 (GATA-binding factor 6)| (DNA-binding protein GATA-GT2) Length = 441 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = +1 Query: 295 PHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGG 399 P+L+G G P N AG P S P GG Sbjct: 56 PYLQGAGSGPSNHAGGAGAHPGWPQASADSPPYGG 90
>HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)| Length = 320 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +1 Query: 295 PHLRGGGRSPDNQVLAAGPTPAGAYPSGAVQPSGGYA 405 PH GGGR P A AYP+ A+ P+ G A Sbjct: 61 PHA-GGGREPPASYYAPRTAREPAYPAAALYPAHGAA 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,216,793 Number of Sequences: 219361 Number of extensions: 630545 Number of successful extensions: 2133 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 1914 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2127 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
