Clone Name | basdi08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_550379.1| Oryza sativa (japonica cultivar-group), mRNA Length = 539 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 63 gatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcgcca 122 |||||| ||| |||| ||| |||||||||||||||| | ||||| ||| |||||||||| Sbjct: 101 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 160 Query: 123 cgaggagaagggctgcatctacgcatgcgtgttcac 158 ||||| || |||||| |||| |||||| ||||||| Sbjct: 161 tgaggacaaaggctgcctctatgcatgcctgttcac 196
>dbj|AK062450.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C02, full insert sequence Length = 539 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 63 gatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcgcca 122 |||||| ||| |||| ||| |||||||||||||||| | ||||| ||| |||||||||| Sbjct: 101 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 160 Query: 123 cgaggagaagggctgcatctacgcatgcgtgttcac 158 ||||| || |||||| |||| |||||| ||||||| Sbjct: 161 tgaggacaaaggctgcctctatgcatgcctgttcac 196
>gb|AY103859.1| Zea mays PCO146670 mRNA sequence Length = 613 Score = 63.9 bits (32), Expect = 4e-07 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand = Plus / Plus Query: 84 gcaggagatgtcctacacggaccacgt-ccagaagcgccacgaggagaagggctgcatct 142 |||||||||||||||| ||| ||||| ||||| ||| |||||||||||||||||| ||| Sbjct: 219 gcaggagatgtcctacttggagcacgtgccagaggcggcacgaggagaagggctgcctct 278 Query: 143 acgcatgc 150 ||| |||| Sbjct: 279 acggatgc 286
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 63 gatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcgcca 122 |||||| ||| |||| ||| |||||||||||||||| | ||||| ||| |||||||||| Sbjct: 4066219 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 4066160 Query: 123 cgaggagaagggctgcatctacgcatg 149 ||||| || |||||| |||| ||||| Sbjct: 4066159 tgaggacaaaggctgcctctatgcatg 4066133
>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0509B06 Length = 104515 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 63 gatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcgcca 122 |||||| ||| |||| ||| |||||||||||||||| | ||||| ||| |||||||||| Sbjct: 32962 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 32903 Query: 123 cgaggagaagggctgcatctacgcatg 149 ||||| || |||||| |||| ||||| Sbjct: 32902 tgaggacaaaggctgcctctatgcatg 32876
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406H10 Length = 156419 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 63 gatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcgcca 122 |||||| ||| |||| ||| |||||||||||||||| | ||||| ||| |||||||||| Sbjct: 13190 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 13131 Query: 123 cgaggagaagggctgcatctacgcatg 149 ||||| || |||||| |||| ||||| Sbjct: 13130 tgaggacaaaggctgcctctatgcatg 13104
>ref|XM_550628.1| Oryza sativa (japonica cultivar-group), mRNA Length = 509 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 60 caagatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcg 119 ||||||||||||||||||| || ||||| ||||||||| || || || |||| ||| Sbjct: 110 caagatgtataacgctccaatggcacaggacatgtcctactatgaacatgtgcagaggcg 169 Query: 120 ccacgaggagaagggctgcatctacgcatgc 150 ||| ||||||||||| ||| |||| |||||| Sbjct: 170 ccatgaggagaagggttgcctctatgcatgc 200
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 60 caagatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcg 119 ||||||||||||||||||| || ||||| ||||||||| || || || |||| ||| Sbjct: 2261642 caagatgtataacgctccaatggcacaggacatgtcctactatgaacatgtgcagaggcg 2261583 Query: 120 ccacgaggagaagggctgcatctacgcatg 149 ||| ||||||||||| ||| |||| ||||| Sbjct: 2261582 ccatgaggagaagggttgcctctatgcatg 2261553 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Minus Query: 115 aagcgccacgaggagaagggctgcatctacgcatg 149 ||||| || ||||||||||||||| |||||||||| Sbjct: 2262818 aagcggcatgaggagaagggctgcctctacgcatg 2262784
>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0535G04 Length = 154180 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 60 caagatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcg 119 ||||||||||||||||||| || ||||| ||||||||| || || || |||| ||| Sbjct: 121099 caagatgtataacgctccaatggcacaggacatgtcctactatgaacatgtgcagaggcg 121040 Query: 120 ccacgaggagaagggctgcatctacgcatg 149 ||| ||||||||||| ||| |||| ||||| Sbjct: 121039 ccatgaggagaagggttgcctctatgcatg 121010 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Minus Query: 115 aagcgccacgaggagaagggctgcatctacgcatg 149 ||||| || ||||||||||||||| |||||||||| Sbjct: 122275 aagcggcatgaggagaagggctgcctctacgcatg 122241
>ref|XM_550627.1| Oryza sativa (japonica cultivar-group), mRNA Length = 491 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 115 aagcgccacgaggagaagggctgcatctacgcatgc 150 ||||| || ||||||||||||||| ||||||||||| Sbjct: 147 aagcggcatgaggagaagggctgcctctacgcatgc 182
>dbj|AK061597.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G09, full insert sequence Length = 491 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 115 aagcgccacgaggagaagggctgcatctacgcatgc 150 ||||| || ||||||||||||||| ||||||||||| Sbjct: 147 aagcggcatgaggagaagggctgcctctacgcatgc 182
>dbj|AK121057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056I18, full insert sequence Length = 508 Score = 46.1 bits (23), Expect = 0.099 Identities = 74/91 (81%) Strand = Plus / Plus Query: 60 caagatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcg 119 ||||||||||||||||||| || ||||| ||||||||| || | || |||| ||| Sbjct: 109 caagatgtataacgctccaatggcacaggacatgtcctactatgaatatgtgcagaggcg 168 Query: 120 ccacgaggagaagggctgcatctacgcatgc 150 ||| ||||||||||| ||| |||| |||||| Sbjct: 169 ccatgaggagaagggttgcctctatgcatgc 199
>dbj|AP000057.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 28/28, complete sequence Length = 107897 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 catcttaattcaattcagcat 442 ||||||||||||||||||||| Sbjct: 77823 catcttaattcaattcagcat 77803
>dbj|BS000193.1| Pan troglodytes chromosome 22 clone:PTB-117K17, map 22, partial sequences, complete sequence Length = 124920 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 catcttaattcaattcagcat 442 ||||||||||||||||||||| Sbjct: 13917 catcttaattcaattcagcat 13897
>dbj|AP001721.1| Homo sapiens genomic DNA, chromosome 21q, section 65/105 Length = 340000 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 catcttaattcaattcagcat 442 ||||||||||||||||||||| Sbjct: 119694 catcttaattcaattcagcat 119674
>dbj|AP000331.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:PQ122C7/499A22, complete sequence Length = 64326 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 catcttaattcaattcagcat 442 ||||||||||||||||||||| Sbjct: 34414 catcttaattcaattcagcat 34394
>dbj|AP000172.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone B2344F14-f50E8, segment 8/9, complete sequence Length = 100000 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 catcttaattcaattcagcat 442 ||||||||||||||||||||| Sbjct: 68453 catcttaattcaattcagcat 68433
>gb|AC146680.3| Gasterosteus aculeatus clone CH213-10I3, complete sequence Length = 214256 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gagagcagagcacaaccctt 20 |||||||||||||||||||| Sbjct: 44804 gagagcagagcacaaccctt 44823
>emb|AL450332.19| Human DNA sequence from clone RP11-138M12 on chromosome 6 Contains part of a novel gene, complete sequence Length = 174678 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 tcttaattcaattcagcatc 443 |||||||||||||||||||| Sbjct: 133119 tcttaattcaattcagcatc 133100
>emb|AL389924.17| Human DNA sequence from clone RP11-544N10 on chromosome 9 Contains a arachidonate 15-lipoxygenase (ALOX15) pseudogene and the 5' end of the FGD3 gene for FGD1 family, member 3 (FLJ00004), complete sequence Length = 72402 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 atgttgctactataataccatctg 375 |||||||||||| ||||||||||| Sbjct: 22052 atgttgctactacaataccatctg 22029
>gb|AC079834.8| Homo sapiens BAC clone CTD-2308L22 from 2, complete sequence Length = 108621 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 atcttaattcaattcagcat 442 |||||||||||||||||||| Sbjct: 56287 atcttaattcaattcagcat 56268
>gb|AY110206.1| Zea mays CL25252_1 mRNA sequence Length = 928 Score = 40.1 bits (20), Expect = 6.1 Identities = 44/52 (84%) Strand = Plus / Minus Query: 82 gggcaggagatgtcctacacggaccacgtccagaagcgccacgaggagaagg 133 |||||||| ||||||||| || || || ||||||||||| |||||||||| Sbjct: 418 gggcaggacatgtcctactacgatcatgtgcagaagcgccatgaggagaagg 367 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,412,703 Number of Sequences: 3902068 Number of extensions: 2412703 Number of successful extensions: 40051 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 40003 Number of HSP's gapped (non-prelim): 45 length of query: 453 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 431 effective length of database: 17,147,199,772 effective search space: 7390443101732 effective search space used: 7390443101732 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)