ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdi08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_550379.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
2dbj|AK062450.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
3gb|AY103859.1| Zea mays PCO146670 mRNA sequence 64 4e-07
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
5dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
6dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
7ref|XM_550628.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
9dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10ref|XM_550627.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.025
11dbj|AK061597.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.025
12dbj|AK121057.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.099
13dbj|AP000057.1| Homo sapiens genomic DNA, chromosome 21q22.1, se... 42 1.5
14dbj|BS000193.1| Pan troglodytes chromosome 22 clone:PTB-117K17, ... 42 1.5
15dbj|AP001721.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 1.5
16dbj|AP000331.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 42 1.5
17dbj|AP000172.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 42 1.5
18gb|AC146680.3| Gasterosteus aculeatus clone CH213-10I3, complete... 40 6.1
19emb|AL450332.19| Human DNA sequence from clone RP11-138M12 on ch... 40 6.1
20emb|AL389924.17| Human DNA sequence from clone RP11-544N10 on ch... 40 6.1
21gb|AC079834.8| Homo sapiens BAC clone CTD-2308L22 from 2, comple... 40 6.1
22gb|AY110206.1| Zea mays CL25252_1 mRNA sequence 40 6.1

>ref|XM_550379.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 539

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                       
Query: 63  gatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcgcca 122
           |||||| ||| ||||  ||| |||||||||||||||| | ||||| ||| ||||||||||
Sbjct: 101 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 160

                                               
Query: 123 cgaggagaagggctgcatctacgcatgcgtgttcac 158
            ||||| || |||||| |||| |||||| |||||||
Sbjct: 161 tgaggacaaaggctgcctctatgcatgcctgttcac 196



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>dbj|AK062450.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C02, full
           insert sequence
          Length = 539

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                       
Query: 63  gatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcgcca 122
           |||||| ||| ||||  ||| |||||||||||||||| | ||||| ||| ||||||||||
Sbjct: 101 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 160

                                               
Query: 123 cgaggagaagggctgcatctacgcatgcgtgttcac 158
            ||||| || |||||| |||| |||||| |||||||
Sbjct: 161 tgaggacaaaggctgcctctatgcatgcctgttcac 196



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>gb|AY103859.1| Zea mays PCO146670 mRNA sequence
          Length = 613

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 60/68 (88%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                       
Query: 84  gcaggagatgtcctacacggaccacgt-ccagaagcgccacgaggagaagggctgcatct 142
           ||||||||||||||||  ||| ||||| ||||| ||| |||||||||||||||||| |||
Sbjct: 219 gcaggagatgtcctacttggagcacgtgccagaggcggcacgaggagaagggctgcctct 278

                   
Query: 143 acgcatgc 150
           ||| ||||
Sbjct: 279 acggatgc 286



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                           
Query: 63      gatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcgcca 122
               |||||| ||| ||||  ||| |||||||||||||||| | ||||| ||| ||||||||||
Sbjct: 4066219 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 4066160

                                          
Query: 123     cgaggagaagggctgcatctacgcatg 149
                ||||| || |||||| |||| |||||
Sbjct: 4066159 tgaggacaaaggctgcctctatgcatg 4066133



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>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0509B06
          Length = 104515

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                         
Query: 63    gatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcgcca 122
             |||||| ||| ||||  ||| |||||||||||||||| | ||||| ||| ||||||||||
Sbjct: 32962 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 32903

                                        
Query: 123   cgaggagaagggctgcatctacgcatg 149
              ||||| || |||||| |||| |||||
Sbjct: 32902 tgaggacaaaggctgcctctatgcatg 32876



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>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406H10
          Length = 156419

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                         
Query: 63    gatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcgcca 122
             |||||| ||| ||||  ||| |||||||||||||||| | ||||| ||| ||||||||||
Sbjct: 13190 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 13131

                                        
Query: 123   cgaggagaagggctgcatctacgcatg 149
              ||||| || |||||| |||| |||||
Sbjct: 13130 tgaggacaaaggctgcctctatgcatg 13104



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>ref|XM_550628.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 509

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                       
Query: 60  caagatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcg 119
           |||||||||||||||||||  ||  ||||| |||||||||   || || || |||| |||
Sbjct: 110 caagatgtataacgctccaatggcacaggacatgtcctactatgaacatgtgcagaggcg 169

                                          
Query: 120 ccacgaggagaagggctgcatctacgcatgc 150
           ||| ||||||||||| ||| |||| ||||||
Sbjct: 170 ccatgaggagaagggttgcctctatgcatgc 200



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                           
Query: 60      caagatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcg 119
               |||||||||||||||||||  ||  ||||| |||||||||   || || || |||| |||
Sbjct: 2261642 caagatgtataacgctccaatggcacaggacatgtcctactatgaacatgtgcagaggcg 2261583

                                             
Query: 120     ccacgaggagaagggctgcatctacgcatg 149
               ||| ||||||||||| ||| |||| |||||
Sbjct: 2261582 ccatgaggagaagggttgcctctatgcatg 2261553



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 115     aagcgccacgaggagaagggctgcatctacgcatg 149
               ||||| || ||||||||||||||| ||||||||||
Sbjct: 2262818 aagcggcatgaggagaagggctgcctctacgcatg 2262784



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>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0535G04
          Length = 154180

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                          
Query: 60     caagatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcg 119
              |||||||||||||||||||  ||  ||||| |||||||||   || || || |||| |||
Sbjct: 121099 caagatgtataacgctccaatggcacaggacatgtcctactatgaacatgtgcagaggcg 121040

                                            
Query: 120    ccacgaggagaagggctgcatctacgcatg 149
              ||| ||||||||||| ||| |||| |||||
Sbjct: 121039 ccatgaggagaagggttgcctctatgcatg 121010



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 115    aagcgccacgaggagaagggctgcatctacgcatg 149
              ||||| || ||||||||||||||| ||||||||||
Sbjct: 122275 aagcggcatgaggagaagggctgcctctacgcatg 122241



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>ref|XM_550627.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 491

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 115 aagcgccacgaggagaagggctgcatctacgcatgc 150
           ||||| || ||||||||||||||| |||||||||||
Sbjct: 147 aagcggcatgaggagaagggctgcctctacgcatgc 182



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>dbj|AK061597.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G09, full
           insert sequence
          Length = 491

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 115 aagcgccacgaggagaagggctgcatctacgcatgc 150
           ||||| || ||||||||||||||| |||||||||||
Sbjct: 147 aagcggcatgaggagaagggctgcctctacgcatgc 182



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>dbj|AK121057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056I18, full
           insert sequence
          Length = 508

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 74/91 (81%)
 Strand = Plus / Plus

                                                                       
Query: 60  caagatgtataacgctccatcggggcaggagatgtcctacacggaccacgtccagaagcg 119
           |||||||||||||||||||  ||  ||||| |||||||||   ||  | || |||| |||
Sbjct: 109 caagatgtataacgctccaatggcacaggacatgtcctactatgaatatgtgcagaggcg 168

                                          
Query: 120 ccacgaggagaagggctgcatctacgcatgc 150
           ||| ||||||||||| ||| |||| ||||||
Sbjct: 169 ccatgaggagaagggttgcctctatgcatgc 199



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>dbj|AP000057.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 28/28, complete
             sequence
          Length = 107897

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 422   catcttaattcaattcagcat 442
             |||||||||||||||||||||
Sbjct: 77823 catcttaattcaattcagcat 77803



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>dbj|BS000193.1| Pan troglodytes chromosome 22 clone:PTB-117K17, map 22, partial
             sequences, complete sequence
          Length = 124920

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 422   catcttaattcaattcagcat 442
             |||||||||||||||||||||
Sbjct: 13917 catcttaattcaattcagcat 13897



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>dbj|AP001721.1| Homo sapiens genomic DNA, chromosome 21q, section 65/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 422    catcttaattcaattcagcat 442
              |||||||||||||||||||||
Sbjct: 119694 catcttaattcaattcagcat 119674



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>dbj|AP000331.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:PQ122C7/499A22, complete sequence
          Length = 64326

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 422   catcttaattcaattcagcat 442
             |||||||||||||||||||||
Sbjct: 34414 catcttaattcaattcagcat 34394



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>dbj|AP000172.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B2344F14-f50E8, segment 8/9, complete sequence
          Length = 100000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 422   catcttaattcaattcagcat 442
             |||||||||||||||||||||
Sbjct: 68453 catcttaattcaattcagcat 68433



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>gb|AC146680.3| Gasterosteus aculeatus clone CH213-10I3, complete sequence
          Length = 214256

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     gagagcagagcacaaccctt 20
             ||||||||||||||||||||
Sbjct: 44804 gagagcagagcacaaccctt 44823



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>emb|AL450332.19| Human DNA sequence from clone RP11-138M12 on chromosome 6 Contains part
              of a novel gene, complete sequence
          Length = 174678

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 424    tcttaattcaattcagcatc 443
              ||||||||||||||||||||
Sbjct: 133119 tcttaattcaattcagcatc 133100



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>emb|AL389924.17| Human DNA sequence from clone RP11-544N10 on chromosome 9 Contains a
             arachidonate 15-lipoxygenase (ALOX15) pseudogene and the
             5' end of the FGD3 gene for FGD1 family, member 3
             (FLJ00004), complete sequence
          Length = 72402

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   atgttgctactataataccatctg 375
             |||||||||||| |||||||||||
Sbjct: 22052 atgttgctactacaataccatctg 22029



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>gb|AC079834.8| Homo sapiens BAC clone CTD-2308L22 from 2, complete sequence
          Length = 108621

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   atcttaattcaattcagcat 442
             ||||||||||||||||||||
Sbjct: 56287 atcttaattcaattcagcat 56268



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>gb|AY110206.1| Zea mays CL25252_1 mRNA sequence
          Length = 928

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 82  gggcaggagatgtcctacacggaccacgtccagaagcgccacgaggagaagg 133
           |||||||| |||||||||   || || || ||||||||||| ||||||||||
Sbjct: 418 gggcaggacatgtcctactacgatcatgtgcagaagcgccatgaggagaagg 367


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,412,703
Number of Sequences: 3902068
Number of extensions: 2412703
Number of successful extensions: 40051
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 40003
Number of HSP's gapped (non-prelim): 45
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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