ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdi08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PTP2_CAEEL (P28192) Tyrosine-protein phosphatase 2 (EC 3.1.3.48)... 34 0.15
2ATS16_MOUSE (Q69Z28) ADAMTS-16 precursor (EC 3.4.24.-) (A disint... 30 2.8
3DHE4_NEUIN (Q9HGU4) NADP-specific glutamate dehydrogenase (EC 1.... 29 4.8
4DHE4_NEUCR (P00369) NADP-specific glutamate dehydrogenase (EC 1.... 29 4.8
5DNAK3_SYNY3 (P73098) Chaperone protein dnaK3 (Heat shock protein... 29 6.3
61A16_ARATH (Q9SAR0) 1-aminocyclopropane-1-carboxylate synthase 6... 28 8.2

>PTP2_CAEEL (P28192) Tyrosine-protein phosphatase 2 (EC 3.1.3.48)|
           (Protein-tyrosine phosphatase 2)
          Length = 1156

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +3

Query: 252 WPQGAAETHRPPLPFTISICD*CLSSMRGTVVSDVATIIPSVPDKTITVIIHHGSCCILI 431
           W   AA  HRP L F++S+            VSD    + + P    TVI+ + S   L 
Sbjct: 175 WTHNAARAHRPILRFSVSV----------RTVSDNTRFVMAAPSNATTVIVDNLSPYTLY 224

Query: 432 QFSIK 446
            FS++
Sbjct: 225 AFSVR 229



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>ATS16_MOUSE (Q69Z28) ADAMTS-16 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 16) (ADAM-TS
            16) (ADAM-TS16)
          Length = 1222

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -3

Query: 139  CSPSPRGASGRGPCRTSPAPME-RYTSWQRVGRVTMGRSLPRVVLCS 2
            C+P  R  +G  PC+ SP P      +W    R   G +  R V C+
Sbjct: 907  CNPKTRPVTGLVPCKVSPCPSSWSVGNWSVCSRTCGGGTQSRPVRCT 953



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>DHE4_NEUIN (Q9HGU4) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)|
           (NADP-GDH) (NADP-dependent glutamate dehydrogenase)
          Length = 453

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -3

Query: 397 TVIVLSGTDGIIVATSDTTVPLIELRH*SHMLIVKGSGGRWVSAAPCGHLPW----RPW 233
           TV+ LS + G +VAT ++ + + ++   + ++ +K +     S    GHL W    RPW
Sbjct: 243 TVVSLSDSKGALVATGESGITVEDI---NAVMAIKEARQSLTSFQHAGHLKWIEGARPW 298



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>DHE4_NEUCR (P00369) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)|
           (NADP-GDH) (NADP-dependent glutamate dehydrogenase)
          Length = 453

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -3

Query: 397 TVIVLSGTDGIIVATSDTTVPLIELRH*SHMLIVKGSGGRWVSAAPCGHLPW----RPW 233
           TV+ LS + G +VAT ++ + + ++   + ++ +K +     S    GHL W    RPW
Sbjct: 243 TVVSLSDSKGALVATGESGITVEDI---NAVMAIKEARQSLTSFQHAGHLKWIEGARPW 298



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>DNAK3_SYNY3 (P73098) Chaperone protein dnaK3 (Heat shock protein 70-3) (Heat|
           shock 70 kDa protein 3) (HSP70-3)
          Length = 771

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 145 RRCSPSPRGASGRGPCRTSPAPMERYTSWQRVGRVTMGR 29
           RR +P PR  +GRGP  +       Y  W +  RVT  R
Sbjct: 660 RREAPMPRAGAGRGPSLSKDYRSTAYADWDQ-SRVTRQR 697



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>1A16_ARATH (Q9SAR0) 1-aminocyclopropane-1-carboxylate synthase 6 (EC 4.4.1.14)|
           (ACC synthase 6) (S-adenosyl-L-methionine
           methylthioadenosine-lyase 6)
          Length = 495

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 371 ICPGQDYHCNHPSWFVLHLNSIQHQ 445
           + PG  +HC+ P WF +   ++ H+
Sbjct: 399 VSPGGSFHCHEPGWFRVCFANMDHK 423


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,984,456
Number of Sequences: 219361
Number of extensions: 876366
Number of successful extensions: 2602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2602
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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