ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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Clone |
Length |
Accession No. |
nt | uniprot | TIGR-ORF | RAP-ORF | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | |||
| basdm20 | 554 | AV926025 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | POF13_SCHPO (O94334) F-box protein pof13 Length = 396 | 6 | -- | --- | - | -- | --- | - |
| basdm19 | 656 | AV926024 | not_full | emb|AJ011807.1|HVU011807 Hordeum vulgare chloroplast tRNA-fMet and tRNA-Gly (UCC and GCC) genes Length = 2975 | 500 | -- | --- | 0 | -- | --- | - | -- | --- | - |
| basdm18 | 534 | AV926023 | not_full | dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 | 42 | not_full | PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC 3.1.3.2) (PAP) Length = 469 | 7 | -- | --- | - | -- | --- | - |
| basdm17 | 460 | AV926022 | not_full | gb|AY525640.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;2 mRNA, complete cds Length = 853 | 271 | not_full | TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrinsic protein 2.2) (OsTIP2.2) Length = 248 | 359 | -- | --- | - | -- | --- | - |
| basdm16 | 496 | AV926021 | not_full | emb|X14107.1|CHHVPSBD Hordeum vulgare chloroplast psbB, psbH, petB and petD Length = 5221 | 500 | not_full | PSBH_HORVU (P12363) Photosystem II reaction center H protein (Photosystem II 10 kDa phosphoprotein) (PSII-H) Length = 72 | 204 | -- | --- | - | -- | --- | - |
| basdm15 | 596 | AV926020 | not_full | emb|X14107.1|CHHVPSBD Hordeum vulgare chloroplast psbB, psbH, petB and petD Length = 5221 | 500 | not_full | PSBH_HORVU (P12363) Photosystem II reaction center H protein (Photosystem II 10 kDa phosphoprotein) (PSII-H) Length = 72 | 197 | -- | --- | - | -- | --- | - |
| basdm14 | 678 | AV926019 | not_full | emb|AJ131737.1|SCE131737 Secale cereale mRNA for hypothetical protein, clone 5 Length = 845 | 408 | full | RBS1_WHEAT (P00871) Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit PWS4.3) Length = 174 | 160 | -- | --- | - | -- | --- | - |
| basdm13 | 595 | AV926018 | not_full | emb|Z23130.1|HVBLT63A H.vulgare BLT63 mRNA, complete CDS Length = 1560 | 500 | not_full | EF1A2_HORVU (Q40034) Elongation factor 1-alpha (EF-1-alpha) Length = 447 | 374 | -- | --- | - | -- | --- | - |
| basdm12 | 476 | AV836593 | not_full | dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 | 19 | not_full | GCP3_HUMAN (Q96CW5) Gamma-tubulin complex component 3 (GCP-3) (Spindle pole body protein Spc98 homolog) (hSpc98) (hGCP3) (h104p) Length = 907 | 23 | -- | --- | - | -- | --- | - |
| basdm10 | 585 | AV926017 | not_full | ref|NM_197898.1| Oryza sativa (japonica cultivar-group) hepatocyte growth factor-regulated tyrosine kinase substrate-like protein (OSJNBa0035H01.5), mRNA Length = 1554 | 34 | not_full | MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-protein kinase 2 (EC 2.7.11.1) Length = 1734 | 8 | -- | --- | - | -- | --- | - |
| basdm09 | 507 | AV926016 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 290 | not_full | RR7_WHEAT (P62733) Chloroplast 30S ribosomal protein S7 Length = 156 | 397 | -- | --- | - | -- | --- | - |
| basdm08 | 623 | AV926015 | not_full | gb|U60754.1|TAU60754 Triticum aestivum delta-24-sterol methyltransferase (TA-MT) mRNA, complete cds Length = 1392 | 123 | not_full | SMT1_ORYSA (Q6ZIX2) Cycloartenol-C-24-methyltransferase 1 (EC 2.1.1.41) (24-sterol C-methyltransferase 1) (Sterol C-methyltransferase 1) Length = 344 | 24 | -- | --- | - | -- | --- | - |
| basdm07 | 566 | AV836592 | not_full | ref|NM_191407.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1566 | 42 | not_full | PDM1_DROME (P31368) Protein nubbin (Protein twain) (POU domain protein 1) (PDM-1) (dPOU-19) (dOCT1) Length = 601 | 15 | -- | --- | - | -- | --- | - |
| basdm05 | 536 | AV926014 | not_full | gb|BT009009.1| Triticum aestivum clone wdk3c.pk005.b17:fis, full insert mRNA sequence Length = 1620 | 95 | not_full | AATC_ORYSA (P37833) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) Length = 407 | 57 | -- | --- | - | -- | --- | - |
| basdm04 | 517 | AV926013 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_AEGTA (P25414) Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 421 | 500 | -- | --- | - | -- | --- | - |
| basdm03 | 545 | AV926012 | not_full | ref|XM_483211.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1507 | 91 | not_full | SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 | 42 | -- | --- | - | -- | --- | - |
| basdm02 | 508 | AV926011 | not_full | emb|X57554.1|HVBLT14 H. vulgare BLT14 mRNA Length = 514 | 35 | not_full | CR14_HORVU (P26154) Cold-regulated protein BLT14 Length = 88 | 12 | -- | --- | - | -- | --- | - |
| basdl22 | 532 | AV836591 | not_full | ref|XM_550058.1| Oryza sativa (japonica cultivar-group), mRNA Length = 924 | 13 | not_full | YHL1_EBV (P03181) Hypothetical protein BHLF1 Length = 660 | 11 | -- | --- | - | -- | --- | - |
| basdl20 | 581 | AV926010 | not_full | gb|AC134548.5| Mus musculus BAC clone RP24-258K6 from chromosome 15, complete sequence Length = 177331 | 500 | not_full | YNCB_ECOLI (P76113) Putative NADP-dependent oxidoreductase yncB (EC 1.-.-.-) Length = 353 | 7 | -- | --- | - | -- | --- | - |
| basdl19 | 544 | AV926009 | not_full | ref|XM_476420.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 | 56 | not_full | IF2_VIBPA (Q87M02) Translation initiation factor IF-2 Length = 905 | 48 | -- | --- | - | -- | --- | - |
| basdl17 | 528 | AV926008 | not_full | gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 | 44 | not_full | SCFD2_HUMAN (Q8WU76) Sec1 family domain-containing protein 2 (Syntaxin-binding protein 1-like 1) Length = 684 | 7 | -- | --- | - | -- | --- | - |
| basdl16 | 578 | AV926007 | not_full | gb|AF067732.1|AF067732 Hordeum vulgare ribosomal protein S12 (rps12) mRNA, complete cds Length = 760 | 67 | not_full | RS12_HORVU (Q9XHS0) 40S ribosomal protein S12 Length = 143 | 73 | -- | --- | - | -- | --- | - |
| basdl15 | 579 | AV926006 | not_full | gb|DQ083230.1| Oryza sativa (indica cultivar-group) clone 3B12G81 mRNA sequence Length = 449 | 65 | full | ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein At2g36320 Length = 161 | 39 | -- | --- | - | -- | --- | - |
| basdl12 | 450 | AV926005 | not_full | ref|XM_479194.1| Oryza sativa (japonica cultivar-group), mRNA Length = 812 | 30 | not_full | AHM6_ARATH (Q9SZC9) Putative copper-transporting ATPase PAA1 (EC 3.6.3.4) Length = 949 | 62 | -- | --- | - | -- | --- | - |
| basdl11 | 525 | AV926004 | not_full | ref|XM_479194.1| Oryza sativa (japonica cultivar-group), mRNA Length = 812 | 31 | not_full | AHM6_ARATH (Q9SZC9) Putative copper-transporting ATPase PAA1 (EC 3.6.3.4) Length = 949 | 54 | -- | --- | - | -- | --- | - |
| basdl10 | 614 | AV926003 | full | gb|AF288226.1|AF288226 Setaria italica actin mRNA, complete cds Length = 1134 | 500 | not_full | ACT7_ARATH (P53492) Actin-7 (Actin-2) Length = 377 | 410 | -- | --- | - | -- | --- | - |
| basdl06 | 508 | AV926002 | not_full | dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 | 87 | not_full | SMT2_ARATH (Q39227) 24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143) (24-sterol C-methyltransferase 2) (Sterol-C-methyltransferase 2) Length = 361 | 12 | -- | --- | - | -- | --- | - |
| basdl05 | 446 | AV926001 | full | gb|AY206371.1| Triticum aestivum photosystem II polypeptide mRNA, partial cds; nuclear gene for chloroplast product Length = 481 | 343 | not_full | PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor Length = 140 | 18 | -- | --- | - | -- | --- | - |
| basdl01 | 628 | AV926000 | not_full | gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 | 500 | not_full | AROG_LYCES (P37216) Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) Length = 541 | 5 | -- | --- | - | -- | --- | - |
| basdk24 | 573 | AV836590 | not_full | ref|XM_658500.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5988.2) partial mRNA Length = 3429 | 19 | not_full | COPB2_SCHPO (O42937) Probable coatomer subunit betaNULL (BetaNULL-coat protein) (BetaNULL-COP) Length = 796 | 22 | -- | --- | - | -- | --- | - |
| basdk23 | 358 | AV925999 | full | gb|AY846823.1| Triticum aestivum ribosomal protein L13a mRNA, complete cds Length = 666 | 228 | not_full | R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4 Length = 206 | 74 | -- | --- | - | -- | --- | - |
| basdk22 | 437 | AV925998 | not_full | gb|AY104424.1| Zea mays PCO061312 mRNA sequence Length = 1386 | 37 | not_full | DZIP3_HUMAN (Q86Y13) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-) (DAZ-interacting protein 3) (RNA-binding ubiquitin ligase of 138 kDa) (hRUL138) Length = 1208 | 243 | -- | --- | - | -- | --- | - |
| basdk21 | 621 | AV925997 | not_full | gb|AF168852.1|AF168852 Hordeum jubatum 18S small subunit ribosomal RNA gene, complete sequence Length = 1745 | 500 | not_full | CHSA_IPOPU (P48397) Chalcone synthase A (EC 2.3.1.74) (Naringenin-chalcone synthase A) (CHS-A) Length = 396 | 143 | -- | --- | - | -- | --- | - |
| basdk20 | 635 | AV925996 | not_full | gb|AY708048.1| Zea mays salt-inducible putative protein serine/threonine/tyrosine kinase mRNA, complete cds Length = 1095 | 102 | not_full | BRI1_ARATH (O22476) BRASSINOSTEROID INSENSITIVE 1 precursor (EC 2.7.11.1) (AtBRI1) (Brassinosteroid LRR receptor kinase) Length = 1196 | 500 | -- | --- | - | -- | --- | - |
| basdk19 | 529 | AV925995 | not_full | gb|M24425.1|BLYACPI Barley acyl carrier protein I (ACP I) mRNA, complete cds Length = 768 | 96 | not_full | ACP1_HORVU (P02902) Acyl carrier protein 1, chloroplast precursor (Acyl carrier protein I) (ACP I) Length = 149 | 198 | -- | --- | - | -- | --- | - |
| basdk18 | 537 | AV925994 | full | gb|AY206371.1| Triticum aestivum photosystem II polypeptide mRNA, partial cds; nuclear gene for chloroplast product Length = 481 | 374 | full | PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor Length = 140 | 24 | -- | --- | - | -- | --- | - |
| basdk17 | 478 | AV836589 | not_full | gb|DQ456871.1| Hordeum vulgare glucose-6-phosphate isomerase (GPI) mRNA, complete cds Length = 2421 | 224 | not_full | G6PI_MAIZE (P49105) Glucose-6-phosphate isomerase, cytosolic (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 567 | 207 | -- | --- | - | -- | --- | - |
| basdk14 | 766 | AV925993 | not_full | dbj|AK100244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056E18, full insert sequence Length = 1030 | 10 | not_full | STR16_ARATH (Q39129) Thiosulfate sulfurtransferase (EC 2.8.1.1) (Rhodanese) (Senescence-associated protein) (Sulfurtransferase protein 16) (AtStr16) Length = 120 | 76 | -- | --- | - | -- | --- | - |
| basdk13 | 163 | AV925992 | not_full | emb|X68654.1|HVCW21 H.vulgare Cw-21 mRNA Length = 705 | 80 | not_full | NLT43_HORVU (Q42842) Nonspecific lipid-transfer protein 4.3 precursor (LTP 4.3) Length = 115 | 55 | -- | --- | - | -- | --- | - |
| basdk10 | 467 | AV925991 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_KLULA (Q6CQE5) Protein TAR1 Length = 109 | 3 | -- | --- | - | -- | --- | - |
| basdk08 | 287 | AV836588 | not_full | dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 | 53 | not_full | YL253_YEAST (Q06567) ABC1 family protein YLR253W Length = 569 | 3 | -- | --- | - | -- | --- | - |
| basdk07 | 628 | AV925990 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basdk05 | 545 | AV925989 | not_full | dbj|AK072187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145E07, full insert sequence Length = 2237 | 67 | not_full | YDIU_SALTI (Q8Z6I8) UPF0061 protein ydiU Length = 480 | 45 | -- | --- | - | -- | --- | - |
| basdk04 | 538 | AV925988 | not_full | gb|BT017005.1| Zea mays clone EK07D2310A10.c mRNA sequence Length = 1053 | 104 | not_full | CHM4B_BRARE (Q7ZVC4) Charged multivesicular body protein 4b (Chromatin-modifying protein 4b) (CHMP4b) Length = 220 | 53 | -- | --- | - | -- | --- | - |
| basdk03 | 605 | AV925987 | not_full | gb|AY137456.1| Hordeum vulgare subsp. vulgare ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, complete cds; chloroplast gene for chloroplast product Length = 1589 | 500 | not_full | RBL_WHEAT (P11383) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) Length = 477 | 500 | -- | --- | - | -- | --- | - |
| basdj24 | 131 | AV925986 | not_full | gb|AC146424.3| Pan troglodytes BAC clone RP43-26H22 from 7, complete sequence Length = 195194 | 12 | not_full | KGP2_RAT (Q64595) cGMP-dependent protein kinase 2 (EC 2.7.11.12) (CGK 2) (cGKII) (Type II cGMP-dependent protein kinase) Length = 762 | 6 | -- | --- | - | -- | --- | - |
| basdj23 | 533 | AV925985 | not_full | gb|BT019230.1| Zea mays clone Contig903.F mRNA sequence Length = 727 | 99 | full | SAP_CAVPO (P20097) Saposin C (CO-beta-glucosidase) (Glucosylceramidase activator) (Sphingolipid activator protein 2) (SAP-2) Length = 81 | 29 | -- | --- | - | -- | --- | - |
| basdj22 | 568 | AV925984 | not_full | gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 | 23 | not_full | DYRK3_DROME (P83102) Putative dual specificity tyrosine-phosphorylation-regulated kinase 3 homolog (EC 2.7.12.1) Length = 828 | 6 | -- | --- | - | -- | --- | - |
| basdj21 | 559 | AV925983 | not_full | dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 | 39 | not_full | CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) Length = 449 | 18 | -- | --- | - | -- | --- | - |
| basdj20 | 633 | AV925982 | not_full | ref|NM_193353.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2718 | 66 | not_full | RPM1_ARATH (Q39214) Disease resistance protein RPM1 (Resistance to Pseudomonas syringae protein 3) Length = 926 | 84 | -- | --- | - | -- | --- | - |
