>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid|
protein C) (p21); Core protein p19; Envelope
glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
(NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
(p23); Serine protease/N
Length = 3032
Score = 29.3 bits (64), Expect = 8.7
Identities = 26/72 (36%), Positives = 31/72 (43%)
Frame = +1
Query: 262 RGSTLRGTEHPR*TSESSVQVRRPQGAHCRRA*ARTSDDSSHGGARGIPTRCWQRHPRKE 441
RG L G R TSE S +P+G R D S G A G P R W + +
Sbjct: 39 RGPRL-GVRTTRKTSERS----QPRG----RRQPIPKDRRSTGKAWGKPGRPWPLYGNEG 89
Query: 442 IGWVRWSL*RRG 477
+GW W L RG
Sbjct: 90 LGWAGWLLSPRG 101
Database: uniprot_sprot.fasta
Posted date: May 25, 2006 5:36 PM
Number of letters in database: 80,573,946
Number of sequences in database: 219,361
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,229,615
Number of Sequences: 219361
Number of extensions: 1624561
Number of successful extensions: 4935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4933
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)