ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdm10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-pro... 32 1.3
2IRX6_HUMAN (P78412) Iroquois-class homeodomain protein IRX-6 (Ir... 31 3.0
3NCKX4_HUMAN (Q8NFF2) Sodium/potassium/calcium exchanger 4 precur... 30 3.9
4WRKY7_ARATH (Q9STX0) Probable WRKY transcription factor 7 (WRKY ... 30 6.7
5VMSA_HBVAY (P03139) Major surface antigen precursor 30 6.7
6CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22 29 8.7
7K1C16_MOUSE (Q9Z2K1) Keratin, type I cytoskeletal 16 (Cytokerati... 29 8.7
8POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p... 29 8.7

>MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-protein kinase 2 (EC|
            2.7.11.1)
          Length = 1734

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 324  TKTSRSPLSQSLSQNQR*FQSRWSPRNPHALLAKTPPQGNRLGPVVALAAG 476
            T  S S L++SLS  +       SP + H+L  ++PPQG R+ P    + G
Sbjct: 1182 TSRSLSSLNRSLSSGE---SGPGSPTHSHSLSPRSPPQGYRVAPDAVHSVG 1229



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>IRX6_HUMAN (P78412) Iroquois-class homeodomain protein IRX-6 (Iroquois|
           homeobox protein 6) (Homeodomain protein IRXB3)
          Length = 445

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 135 RSSTLLRATSKASSTCTEGAARTGARLSSGIS*YPXLCC 19
           R ++   A++ +S+TC E   R+ + ++SG +  P LCC
Sbjct: 11  RGASQFLASASSSTTCCESTQRSVSDVASGSTPAPALCC 49



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>NCKX4_HUMAN (Q8NFF2) Sodium/potassium/calcium exchanger 4 precursor|
           (Na(+)/K(+)/Ca(2+)-exchange protein 4) (Solute carrier
           family 24 member 4)
          Length = 605

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = -1

Query: 474 PPLERPPDP----ADFLAGVSLPTARGD 403
           PP   PP+P    ADFL+  S+P ARGD
Sbjct: 379 PPQPPPPEPEPVEADFLSPFSVPEARGD 406



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>WRKY7_ARATH (Q9STX0) Probable WRKY transcription factor 7 (WRKY DNA-binding|
           protein 7)
          Length = 353

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = +3

Query: 219 VNTRSRESSRLQVITRLNSSRH*ASTMNFRKFCPSTKTSRSPLSQSLSQNQR*FQSRWSP 398
           V    ++     V+T+  + ++      FR +CP+    R PLS + + NQ   ++  S 
Sbjct: 115 VEVEEKKPETSSVLTKQKTEQYHGGGSAFRVYCPTPIHRRPPLSHNNNNNQNQTKNGSSS 174

Query: 399 RNPHALLAKTPPQGNRLGPVVALAA 473
            +P  +LA   P      P   ++A
Sbjct: 175 SSP-PMLANGAPSTINFAPSPPVSA 198



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>VMSA_HBVAY (P03139) Major surface antigen precursor|
          Length = 388

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 99  SSTCTEGAARTGARLSSGIS*YPXLCCIR 13
           SST + G+ RT    + GIS YP  CC +
Sbjct: 275 SSTTSTGSCRTCTTPAQGISMYPSCCCTK 303



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>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22|
          Length = 881

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 231 SRESSRLQVITRLNS-SRH*ASTMNFRKFCPSTKTSRSPLSQSLSQNQR*FQSRWSPRNP 407
           SR   R + I+R  S SR  + +   R + PS   SRSP+ +S  ++    +SR      
Sbjct: 670 SRSRGRRRSISRGRSYSRSVSGSSRGRSYTPSYSRSRSPVPKSRRRSVSYSRSRSPAGRR 729

Query: 408 HALLAKTPPQ 437
            + +++TPP+
Sbjct: 730 RSSVSRTPPR 739



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>K1C16_MOUSE (Q9Z2K1) Keratin, type I cytoskeletal 16 (Cytokeratin-16) (CK-16)|
           (Keratin-16) (K16)
          Length = 468

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -1

Query: 201 TRVVVKSSSRASFCGDDDSTVERSSTLLRATSKASSTCTEGAARTGARLSSG 46
           +R    SSS    CG    +   SS L   + +A STC  G + T +R SSG
Sbjct: 4   SRQFTSSSSMKGSCGIGGGSSRMSSILAGGSCRAPSTC-GGMSVTSSRFSSG 54



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>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3032

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 26/72 (36%), Positives = 31/72 (43%)
 Frame = +1

Query: 262 RGSTLRGTEHPR*TSESSVQVRRPQGAHCRRA*ARTSDDSSHGGARGIPTRCWQRHPRKE 441
           RG  L G    R TSE S    +P+G    R      D  S G A G P R W  +  + 
Sbjct: 39  RGPRL-GVRTTRKTSERS----QPRG----RRQPIPKDRRSTGKAWGKPGRPWPLYGNEG 89

Query: 442 IGWVRWSL*RRG 477
           +GW  W L  RG
Sbjct: 90  LGWAGWLLSPRG 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,229,615
Number of Sequences: 219361
Number of extensions: 1624561
Number of successful extensions: 4935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4933
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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