Clone Name | basdm10 |
---|---|
Clone Library Name | barley_pub |
>MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-protein kinase 2 (EC| 2.7.11.1) Length = 1734 Score = 32.0 bits (71), Expect = 1.3 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = +3 Query: 324 TKTSRSPLSQSLSQNQR*FQSRWSPRNPHALLAKTPPQGNRLGPVVALAAG 476 T S S L++SLS + SP + H+L ++PPQG R+ P + G Sbjct: 1182 TSRSLSSLNRSLSSGE---SGPGSPTHSHSLSPRSPPQGYRVAPDAVHSVG 1229
>IRX6_HUMAN (P78412) Iroquois-class homeodomain protein IRX-6 (Iroquois| homeobox protein 6) (Homeodomain protein IRXB3) Length = 445 Score = 30.8 bits (68), Expect = 3.0 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = -1 Query: 135 RSSTLLRATSKASSTCTEGAARTGARLSSGIS*YPXLCC 19 R ++ A++ +S+TC E R+ + ++SG + P LCC Sbjct: 11 RGASQFLASASSSTTCCESTQRSVSDVASGSTPAPALCC 49
>NCKX4_HUMAN (Q8NFF2) Sodium/potassium/calcium exchanger 4 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 4) (Solute carrier family 24 member 4) Length = 605 Score = 30.4 bits (67), Expect = 3.9 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 4/28 (14%) Frame = -1 Query: 474 PPLERPPDP----ADFLAGVSLPTARGD 403 PP PP+P ADFL+ S+P ARGD Sbjct: 379 PPQPPPPEPEPVEADFLSPFSVPEARGD 406
>WRKY7_ARATH (Q9STX0) Probable WRKY transcription factor 7 (WRKY DNA-binding| protein 7) Length = 353 Score = 29.6 bits (65), Expect = 6.7 Identities = 20/85 (23%), Positives = 37/85 (43%) Frame = +3 Query: 219 VNTRSRESSRLQVITRLNSSRH*ASTMNFRKFCPSTKTSRSPLSQSLSQNQR*FQSRWSP 398 V ++ V+T+ + ++ FR +CP+ R PLS + + NQ ++ S Sbjct: 115 VEVEEKKPETSSVLTKQKTEQYHGGGSAFRVYCPTPIHRRPPLSHNNNNNQNQTKNGSSS 174 Query: 399 RNPHALLAKTPPQGNRLGPVVALAA 473 +P +LA P P ++A Sbjct: 175 SSP-PMLANGAPSTINFAPSPPVSA 198
>VMSA_HBVAY (P03139) Major surface antigen precursor| Length = 388 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 99 SSTCTEGAARTGARLSSGIS*YPXLCCIR 13 SST + G+ RT + GIS YP CC + Sbjct: 275 SSTTSTGSCRTCTTPAQGISMYPSCCCTK 303
>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22| Length = 881 Score = 29.3 bits (64), Expect = 8.7 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +3 Query: 231 SRESSRLQVITRLNS-SRH*ASTMNFRKFCPSTKTSRSPLSQSLSQNQR*FQSRWSPRNP 407 SR R + I+R S SR + + R + PS SRSP+ +S ++ +SR Sbjct: 670 SRSRGRRRSISRGRSYSRSVSGSSRGRSYTPSYSRSRSPVPKSRRRSVSYSRSRSPAGRR 729 Query: 408 HALLAKTPPQ 437 + +++TPP+ Sbjct: 730 RSSVSRTPPR 739
>K1C16_MOUSE (Q9Z2K1) Keratin, type I cytoskeletal 16 (Cytokeratin-16) (CK-16)| (Keratin-16) (K16) Length = 468 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/52 (36%), Positives = 25/52 (48%) Frame = -1 Query: 201 TRVVVKSSSRASFCGDDDSTVERSSTLLRATSKASSTCTEGAARTGARLSSG 46 +R SSS CG + SS L + +A STC G + T +R SSG Sbjct: 4 SRQFTSSSSMKGSCGIGGGSSRMSSILAGGSCRAPSTC-GGMSVTSSRFSSG 54
>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 29.3 bits (64), Expect = 8.7 Identities = 26/72 (36%), Positives = 31/72 (43%) Frame = +1 Query: 262 RGSTLRGTEHPR*TSESSVQVRRPQGAHCRRA*ARTSDDSSHGGARGIPTRCWQRHPRKE 441 RG L G R TSE S +P+G R D S G A G P R W + + Sbjct: 39 RGPRL-GVRTTRKTSERS----QPRG----RRQPIPKDRRSTGKAWGKPGRPWPLYGNEG 89 Query: 442 IGWVRWSL*RRG 477 +GW W L RG Sbjct: 90 LGWAGWLLSPRG 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,229,615 Number of Sequences: 219361 Number of extensions: 1624561 Number of successful extensions: 4935 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 4694 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4933 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)