>YHL1_EBV (P03181) Hypothetical protein BHLF1|
          Length = 660

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 127 PAGPRPPRASVAATTPRRRPINC--SSWETSE*KIWRYCSGQQR 2
           PAGP P R+  AA    RRP  C  S+      + WR  SG QR
Sbjct: 499 PAGPPPTRSGAAAQRTHRRPPGCPRSARNPGCPRTWRRRSGAQR 542



 Score = 32.7 bits (73), Expect = 0.64
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 127 PAGPRPPRASVAATTPRRRPINC--SSWETSE*KIWRYCSGQQR 2
           PAGP P R+  AA    RRP  C  S+      + WR  SG QR
Sbjct: 374 PAGPPPTRSGAAAQRTHRRPPGCPRSARNPGCPRTWRRRSGAQR 417



 Score = 32.7 bits (73), Expect = 0.64
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 127 PAGPRPPRASVAATTPRRRPINC--SSWETSE*KIWRYCSGQQR 2
           PAGP P R+  AA    RRP  C  S+      + WR  SG QR
Sbjct: 249 PAGPPPTRSGAAAQRTHRRPPGCPRSARNPGCPRTWRRRSGAQR 292

>SP3_CHICK (Q90WR8) Transcription factor Sp3|
          Length = 771

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = -2

Query: 198 LSVGERERMKDAEVAALHGRAVSPLLVLGHHEHRWQPPHPGEDQ*TAAAGRHPSRRFGDI 19
           L  G       A  AA      SPL +L     +  PP P ED+  AAA  H +   GD+
Sbjct: 27  LQHGNGNASASAAAAAPQDAQPSPLALLAATCSKIGPPSPEEDEAAAAAASHSAGATGDL 86

Query: 18  A 16
           A
Sbjct: 87  A 87

>ERBB2_CANFA (O18735) Receptor tyrosine-protein kinase erbB-2 precursor (EC|
           2.7.10.1) (p185erbB2) (C-erbB-2)
          Length = 1259

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 17/44 (38%), Positives = 18/44 (40%)
 Frame = -1

Query: 508 VPWPLLRPSPCSCTR*CAGWPERS*TGRSV*LRCYRTLHGTCWG 377
           VPW  L  +P       A  PE    G    L CY   HG CWG
Sbjct: 480 VPWDQLFRNPHQALLHSANRPEEECVGEG--LACYPCAHGHCWG 521

>GAG_FOAMV (P14349) Gag polyprotein (Core polyprotein) [Contains: Protease (EC|
           3.4.23.-)]
          Length = 811

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 21/54 (38%), Positives = 25/54 (46%)
 Frame = +3

Query: 351 SRQAGRVERPQQVPCSVL*HLSQTERPVQDRSGQPAHHLVQLHGEGRSSGQGTS 512
           S Q  +  RP Q    V  + SQT RP   R G+  H+  Q     RSSG G S
Sbjct: 569 SDQGSQTPRPNQAGSGVRGNQSQTPRPAAGRGGRGNHNRNQ-----RSSGAGDS 617

>ESTR_ACIAD (P52667) HTH-type transcriptional regulator estR (Esterase operon|
           transcriptional regulator)
          Length = 301

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 256 SSIPTLRSSIPLNNGFAIL-NISYEKHSL-YAIDLGKLDVLNAPNKCRAVFYNTSVKLNG 429
           SS+PTL   +  N GF +L  I+   H L +  DL   ++ NAP++  A+    S  L  
Sbjct: 225 SSLPTLVEMVSSNLGFTLLPEIAINTHMLKFNDDLLVKEIENAPSRTLALITRKSTPLQS 284

Query: 430 PFKI 441
            F +
Sbjct: 285 EFDV 288

>ZN644_HUMAN (Q9H582) Zinc finger protein 644 (Zinc finger motif enhancer-binding|
            protein 2) (Zep-2)
          Length = 1327

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -3

Query: 512  RRALAAAPSFSVQLYKMMCRLAGAILNGPFSLTEVL*NTARHLLGAFNTSSLPRSMA 342
            ++ +   P  + ++Y + CR  G +  GP S+ E   +  +HL      ++LPR+ A
Sbjct: 1245 KKKMLTLPHGADEVYILRCRFCGLVFRGPLSVQE---DWIKHLQRHIVNANLPRTGA 1298

>AMGO3_RAT (Q80ZD5) Amphoterin-induced protein 3 precursor (AMIGO-3)|
           (Alivin-3)
          Length = 508

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
 Frame = +2

Query: 35  LLGC---LPAAAVYWSSPGCGGCHRC-------SWWPRTSRGETARPXXXXXXXXFIRSR 184
           LLGC   L    +Y  +P C GC RC         WPR S      P         + S 
Sbjct: 388 LLGCIVGLVLVLLYLFAPPCRGCCRCCRRACRNRCWPRAS-----SPLQELSAQSSVLST 442

Query: 185 SPTDRPEDHA 214
           +P D P   A
Sbjct: 443 TPPDAPSRKA 452

>COBD_METJA (Q58710) Probable cobalamin biosynthesis protein cobD|
          Length = 307

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 256 SSIPTLRSSIPLNNGFAILNISYEKHSLYAIDLGKLDVLNAPNKCRAVFYNTSVKL 423
           + +P+  S   +      LNI+ EK   Y +  GK+DV  + N  +AV Y   V L
Sbjct: 242 NKVPSPNSGYTMATLANALNITLEKIGYYKLGSGKIDVEKSLNAFKAVDYTVVVFL 297

>ADA32_HUMAN (Q8TC27) ADAM 32 precursor (A disintegrin and metalloprotease|
           domain 32)
          Length = 787

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +1

Query: 196 QTGRPCGPDPYPDFDVA-CINSSIPTLRSSIPLNNGFAILNISYEKHSLYAIDLGKLDVL 372
           Q+G  C P  +P+ D+A   N S P     I L NG +  N    K   Y  D   LD  
Sbjct: 445 QSGVECRPKAHPECDIAENCNGSSPECGPDITLINGLSCKN---NKFICYDGDCHDLDA- 500

Query: 373 NAPNKCRAVFYNTSVKLNGPF 435
               +C +VF   S   N PF
Sbjct: 501 ----RCESVFGKGS--RNAPF 515

>DPO3A_STRP3 (Q8K7A1) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1036

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +1

Query: 178 FSLTDRQTGRPCGPDPYPDFDVACINSSIPTLRSSIPLNNGFAILNISYEKHSLYAIDLG 357
           F++  R  G P           A I  S  TL + IPL +G  ++   Y+ H++ A  L 
Sbjct: 434 FAIAKRIEGNP----RQTSIHAAGIVMSDDTLTNHIPLKSGDDMMITQYDAHAIEANGLL 489

Query: 358 KLDVLNAPN 384
           K+D L   N
Sbjct: 490 KMDFLGLRN 498

>ADRO_HUMAN (P22570) NADPH:adrenodoxin oxidoreductase, mitochondrial precursor|
           (EC 1.18.1.2) (Adrenodoxin reductase) (AR) (Ferredoxin
           reductase) (Ferredoxin--NADP(+) reductase)
          Length = 491

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 133 LPPAGPRPPRASVAATTPRR--RPINCSSWE 47
           L P+GPRP  A++ A    R  RP++ S WE
Sbjct: 429 LLPSGPRPGYAAIQALLSSRGVRPVSFSDWE 459


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,736,926
Number of Sequences: 219361
Number of extensions: 1904087
Number of successful extensions: 6184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6180
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)