ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basdm08 |
|---|---|
| Clone Library Name | barley_pub |
>SMT1_ORYSA (Q6ZIX2) Cycloartenol-C-24-methyltransferase 1 (EC 2.1.1.41)| (24-sterol C-methyltransferase 1) (Sterol C-methyltransferase 1) Length = 344 Score = 75.9 bits (185), Expect = 9e-14 Identities = 32/33 (96%), Positives = 33/33 (100%) Frame = +3 Query: 525 SRKSNYTDMVNKYYDLATSFYEYGWGESFHFAH 623 +RKSNYTDMVNKYYDLATSFYEYGWGESFHFAH Sbjct: 42 ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAH 74
>SMT1_ARATH (Q9LM02) Cycloartenol-C-24-methyltransferase (EC 2.1.1.41)| (24-sterol C-methyltransferase 1) (Sterol C-methyltransferase 1) (STEROL METHYLTRANSFERASE 1) (CEPHALOPOD protein) Length = 336 Score = 71.2 bits (173), Expect = 2e-12 Identities = 30/31 (96%), Positives = 31/31 (100%) Frame = +3 Query: 528 RKSNYTDMVNKYYDLATSFYEYGWGESFHFA 620 RK+NYTDMVNKYYDLATSFYEYGWGESFHFA Sbjct: 37 RKANYTDMVNKYYDLATSFYEYGWGESFHFA 67
>ERG6_MAGGR (Q5EN22) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 390 Score = 50.4 bits (119), Expect = 4e-06 Identities = 18/30 (60%), Positives = 24/30 (80%) Frame = +3 Query: 528 RKSNYTDMVNKYYDLATSFYEYGWGESFHF 617 RK++Y + +YY+L T FYEYGWG+SFHF Sbjct: 77 RKADYATLTRQYYNLVTDFYEYGWGQSFHF 106
>ERG6_SCHPO (O14321) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 378 Score = 48.9 bits (115), Expect = 1e-05 Identities = 19/31 (61%), Positives = 22/31 (70%) Frame = +3 Query: 528 RKSNYTDMVNKYYDLATSFYEYGWGESFHFA 620 R Y +VN YYDLAT YEYGW +SFHF+ Sbjct: 67 RIDGYKSVVNSYYDLATDLYEYGWSQSFHFS 97
>ERG6_DEBHA (Q6BRB7) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 377 Score = 48.1 bits (113), Expect = 2e-05 Identities = 18/31 (58%), Positives = 24/31 (77%) Frame = +3 Query: 528 RKSNYTDMVNKYYDLATSFYEYGWGESFHFA 620 R S+Y+++ YY+L T FYEYGWG SFHF+ Sbjct: 66 RLSDYSNLTAHYYNLVTDFYEYGWGSSFHFS 96
>ERG6_CANAL (O74198) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 376 Score = 47.8 bits (112), Expect = 3e-05 Identities = 17/31 (54%), Positives = 24/31 (77%) Frame = +3 Query: 528 RKSNYTDMVNKYYDLATSFYEYGWGESFHFA 620 R ++Y+ + + YY+L T FYEYGWG SFHF+ Sbjct: 65 RLNDYSQLTHHYYNLVTDFYEYGWGSSFHFS 95
>ERG6_CLALS (Q875K1) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 375 Score = 47.4 bits (111), Expect = 3e-05 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = +3 Query: 528 RKSNYTDMVNKYYDLATSFYEYGWGESFHFA 620 R +Y+ + YY+L T FYEYGWG SFHF+ Sbjct: 65 RLDDYSSLTKNYYNLVTDFYEYGWGSSFHFS 95
>ERG6_YEAST (P25087) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 382 Score = 45.8 bits (107), Expect = 1e-04 Identities = 16/31 (51%), Positives = 22/31 (70%) Frame = +3 Query: 528 RKSNYTDMVNKYYDLATSFYEYGWGESFHFA 620 R +Y + + YY++ T FYEYGWG SFHF+ Sbjct: 61 RLEDYNEATHSYYNVVTDFYEYGWGSSFHFS 91
>ERG6_YARLI (Q6C2D9) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 381 Score = 45.8 bits (107), Expect = 1e-04 Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = +3 Query: 528 RKSNYTDMVNKYYDLATSFYEYGWGESFHFA 620 R +Y + YY+L T FYEYGWG SFHF+ Sbjct: 71 RIEDYAGLTKHYYNLVTDFYEYGWGSSFHFS 101
>ERG6_KLULA (Q6CYB3) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 371 Score = 45.8 bits (107), Expect = 1e-04 Identities = 16/31 (51%), Positives = 22/31 (70%) Frame = +3 Query: 528 RKSNYTDMVNKYYDLATSFYEYGWGESFHFA 620 R +Y + + YY++ T FYEYGWG SFHF+ Sbjct: 62 RLEDYNESTHSYYNVVTDFYEYGWGSSFHFS 92
>ERG6_CANGA (Q6FRZ7) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 372 Score = 45.8 bits (107), Expect = 1e-04 Identities = 16/31 (51%), Positives = 22/31 (70%) Frame = +3 Query: 528 RKSNYTDMVNKYYDLATSFYEYGWGESFHFA 620 R +Y + + YY++ T FYEYGWG SFHF+ Sbjct: 62 RLEDYNEATHSYYNVVTDFYEYGWGSSFHFS 92
>ERG6_ASHGO (Q759S7) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 373 Score = 45.8 bits (107), Expect = 1e-04 Identities = 16/31 (51%), Positives = 23/31 (74%) Frame = +3 Query: 528 RKSNYTDMVNKYYDLATSFYEYGWGESFHFA 620 R ++Y + + YY++ T FYEYGWG SFHF+ Sbjct: 63 RLADYNESTHSYYNVVTDFYEYGWGASFHFS 93
>ERG6_NEUCR (Q9P3R1) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 379 Score = 44.3 bits (103), Expect = 3e-04 Identities = 16/31 (51%), Positives = 20/31 (64%) Frame = +3 Query: 525 SRKSNYTDMVNKYYDLATSFYEYGWGESFHF 617 +R Y + YY+LAT YEYGWG+ FHF Sbjct: 70 ARTKEYATLTRHYYNLATDIYEYGWGQCFHF 100
>ERG6_PNECA (Q96WX4) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 377 Score = 41.6 bits (96), Expect = 0.002 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = +3 Query: 540 YTDMVNKYYDLATSFYEYGWGESFHF 617 Y + YY+L T FYEYGW SFHF Sbjct: 73 YATLTRHYYNLVTDFYEYGWSTSFHF 98
>SMT3B_ARATH (Q94JS4) 24-methylenesterol C-methyltransferase 3 (EC 2.1.1.143)| (24-sterol C-methyltransferase 3) (Sterol-C-methyltransferase 3) Length = 359 Score = 40.8 bits (94), Expect = 0.003 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = +3 Query: 546 DMVNKYYDLATSFYEYGWGESFHFA 620 D V+ +Y+L T YE+GWG+SFHF+ Sbjct: 72 DFVDTFYNLVTDIYEWGWGQSFHFS 96
>SMT2_ARATH (Q39227) 24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143)| (24-sterol C-methyltransferase 2) (Sterol-C-methyltransferase 2) Length = 361 Score = 40.8 bits (94), Expect = 0.003 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = +3 Query: 546 DMVNKYYDLATSFYEYGWGESFHFA 620 D V+ +Y+L T YE+GWG+SFHF+ Sbjct: 72 DFVDTFYNLVTDIYEWGWGQSFHFS 96
>SMT2_ORYSA (O82427) 24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143)| (24-sterol C-methyltransferase 2) (Sterol-C-methyltransferase 2) Length = 363 Score = 38.5 bits (88), Expect = 0.016 Identities = 13/23 (56%), Positives = 19/23 (82%) Frame = +3 Query: 552 VNKYYDLATSFYEYGWGESFHFA 620 V+ +Y+L T YE+GWG+SFHF+ Sbjct: 79 VDTFYNLVTDIYEWGWGQSFHFS 101
>NU1M_NEUCR (P08774) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 371 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 12/59 (20%) Frame = -1 Query: 620 SKVEGFTPAILVEASSKIIVFINHIGVVGFPRF------------LLPSIISMIFLIPC 480 S +EG+ ++ S I++FI +G FPR LLP I ++I L+PC Sbjct: 298 SILEGWLYGWIIGLKSSIMIFIFILGRASFPRIRYDQLMGFCWTVLLPIIFALIILVPC 356
>MPIP1_CAEEL (O44552) M-phase inducer phosphatase cdc-25.1 (EC 3.1.3.48) (Cell| division cycle-related protein 25.1) Length = 604 Score = 30.8 bits (68), Expect = 3.4 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = -2 Query: 277 HVKGRV*HSGLKKHDMVQALKNMTWFRP*NKNKNKKHGMVPEYYCEYSSGR 125 HVKG + L +HD ++ + F P N + VP +YCEYS R Sbjct: 324 HVKGAI---NLFRHDKIKPI-----FFPENGEASSFQNRVPIFYCEYSQKR 366
>NU4M_DROME (P18931) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 446 Score = 30.4 bits (67), Expect = 4.4 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Frame = +1 Query: 391 FIHFLSKKFVYH---APLFLPCPTLNFGTIFFSQGMRNIMDIMEGRRNRGNPTTPIWLIN 561 FI L F+ + FL C L++G I S + ++M + N+ N ++L+N Sbjct: 33 FIFLLMNNFMNYWSEISYFLGCDMLSYGLILLSLWICSLMLLASEMINKHNNYKNLFLLN 92 Query: 562 TMILLL 579 +ILLL Sbjct: 93 IIILLL 98
>TYSY_BUCAI (P57515) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 264 Score = 30.0 bits (66), Expect = 5.8 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +1 Query: 160 PCHVFYFYFYFKA*TMSCFLRPEPCHVF*GL 252 PCHV + ++ F T+SC L C VF GL Sbjct: 145 PCHVLFQFYVFNN-TLSCQLYQRSCDVFLGL 174
>FRE6_YEAST (Q12473) Ferric reductase transmembrane component 6 precursor (EC| 1.16.1.7) (Ferric-chelate reductase 6) Length = 712 Score = 29.6 bits (65), Expect = 7.6 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%) Frame = -2 Query: 163 MVPEYY---CEYSSGRYSWMTCGASTLTGQIV----TSSDVHLIN*RLKCGI*ARKF 14 +VP +Y C YS +W C ++LT QI+ TS + L N R C +KF Sbjct: 54 VVPGFYSTICSYSPAFDTWSLCIFNSLTDQIIPMDNTSFEESLGNVRKTCSFVDKKF 110
>NU4M_DROYA (P07707) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 446 Score = 29.6 bits (65), Expect = 7.6 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Frame = +1 Query: 391 FIHFLSKKFVYH---APLFLPCPTLNFGTIFFSQGMRNIMDIMEGRRNRGNPTTPIWLIN 561 FI L F+ + FL C L++G + S + ++M + N+ N ++L+N Sbjct: 33 FIFLLMNNFMNYWSEISYFLGCDMLSYGLVLLSLWICSLMLLASESINKYNNYKNLFLLN 92 Query: 562 TMILLL 579 +ILLL Sbjct: 93 IVILLL 98
>TYSY_SHEON (Q8EH94) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 264 Score = 29.3 bits (64), Expect = 9.9 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = +1 Query: 160 PCHVFYFYFYFKA*TMSCFLRPEPCHVF*GLNVKLVLSHVHTLLRA 297 PCH F F FY +SC L C VF GL + + T++ A Sbjct: 145 PCHAF-FQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLTMMVA 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,668,543 Number of Sequences: 219361 Number of extensions: 1776417 Number of successful extensions: 3615 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3506 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3607 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
