ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdm10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197898.1| Oryza sativa (japonica cultivar-group) hepatocy... 375 e-100
2emb|AJ495791.1|OSA495791 Oryza sativa (japonica cultivar-group) ... 375 e-100
3gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 geno... 206 6e-50
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 206 6e-50
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 206 6e-50
6dbj|AK067871.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 9e-12
7ref|XM_467289.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-04
8gb|BT013889.1| Lycopersicon esculentum clone 132874R, mRNA sequence 56 1e-04
9emb|AJ495787.1|OSA495787 Oryza sativa (japonica cultivar-group) ... 56 1e-04
10dbj|AK066018.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
12dbj|AP005868.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
13dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
14ref|XM_744404.1| Aspergillus fumigatus Af293 Ras GTPase activati... 44 0.51
15gb|AC093360.7| Mus musculus chromosome 3, clone RP23-57F18, comp... 42 2.0
16emb|CR955009.1| Medicago truncatula chromosome 5 clone mth2-38i2... 42 2.0
17gb|AC164401.4| Mus musculus chromosome 3, clone RP23-447D6, comp... 42 2.0
18gb|AC034122.12| Mus musculus chromosome 1, clone RP23-169C19, co... 42 2.0
19gb|AC117749.6| Mus musculus chromosome 1, clone RP24-319I19, com... 42 2.0
20emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chr... 42 2.0
21gb|U82624.1|MMU82624 Mus musculus amyloid precursor protein (APP... 42 2.0
22gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 8.0
23emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromo... 40 8.0
24gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome... 40 8.0
25gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 40 8.0
26emb|AL021307.1|HS106B9 Human DNA sequence from clone RP1-106B9 o... 40 8.0
27gb|AC163436.3| Mus musculus chromosome 1, clone RP23-102H12, com... 40 8.0
28gb|AC021613.14| Homo sapiens chromosome 8, clone RP11-279N21, co... 40 8.0
29gb|AC113018.7| Mus musculus chromosome 5, clone RP23-183C18, com... 40 8.0
30gb|AC102900.12| Mus musculus chromosome 1, clone RP24-315J13, co... 40 8.0
31dbj|AK114259.1| Ciona intestinalis cDNA, clone:cicl050a23, full ... 40 8.0
32gb|AC132400.3| Mus musculus BAC clone RP23-400A19 from 1, comple... 40 8.0
33gb|AC172750.1| Mus musculus BAC clone RP24-177J9 from chromosome... 40 8.0
34gb|AC167813.4| Mus musculus BAC clone RP24-233L18 from chromosom... 40 8.0 
>ref|NM_197898.1| Oryza sativa (japonica cultivar-group) hepatocyte growth
            factor-regulated tyrosine kinase substrate-like protein
            (OSJNBa0035H01.5), mRNA
          Length = 1554

 Score =  375 bits (189), Expect = e-100
 Identities = 345/396 (87%), Gaps = 1/396 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gctgaaccgtattctgatgcagcacaggnatgggtatcaagaaattccagatgaaagtct 60
            |||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||| |
Sbjct: 690  gctgaaccatattctgctgcagcacaggaa-gggtatcaagaaattccagatgaaagttt 748

                                                                        
Query: 61   tgctcctgttcgtgctgccccttctgtacaagtcgatgaggcttttgaggtggctcgtaa 120
            ||| || || |  | ||  ||| |||| |||||| |||| ||||||||||||||||||||
Sbjct: 749  tgcgccagtccacgttgttcctgctgtgcaagtcaatgaagcttttgaggtggctcgtaa 808

                                                                        
Query: 121  tagcgttgaacttctttccacggtgctatcatcatctccacaaaaagaggctctggagga 180
            ||||||||||||||||||||||||||| || || ||||||||||||||||||||  ||||
Sbjct: 809  tagcgttgaacttctttccacggtgctttcttcttctccacaaaaagaggctctcaagga 868

                                                                        
Query: 181  tgacttgactaccaccctggtccagcaatgccaacagtgtcaacacacgatccagagaat 240
            |||| |||||||||||||||| |||||||||||||||||||| | ||| |||||||||||
Sbjct: 869  tgacctgactaccaccctggttcagcaatgccaacagtgtcagcgcaccatccagagaat 928

                                                                        
Query: 241  cgtcgagactgcaggtgataacgaggctcaactcttcgaggcactgagcatccacgatga 300
            | | ||||| || ||||| ||||||||||| ||||| |||||| ||||  ||||||||||
Sbjct: 929  cattgagacggctggtgacaacgaggctcagctctttgaggcattgagtgtccacgatga 988

                                                                        
Query: 301  acttcagaaagttctgtccaagtacgaagacctcaaggagcccattgtcgcagagcctga 360
            |||| |||| ||||| ||||||||  |||| |||||||| ||  |||| |||||||||||
Sbjct: 989  acttgagaaggttctctccaagtataaagaactcaaggaacctgttgttgcagagcctga 1048

                                                
Query: 361  gccagaaccagcgatgattccagtcacggtggagcc 396
            | |||| ||||| |||||||||||||| ||||||||
Sbjct: 1049 ggcagagccagccatgattccagtcaccgtggagcc 1084



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                        
Query: 476  gatgacttgcttcaggatcttgatgacatgatctttggtaagaaagccggcacctcctct 535
            ||||| ||||||||||||||||| |||||||| ||||| ||||| | ||||||||| |||
Sbjct: 1143 gatgagttgcttcaggatcttgacgacatgatatttggcaagaagggcggcacctcatct 1202

                    
Query: 536  cagcagga 543
            ||||||||
Sbjct: 1203 cagcagga 1210
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>emb|AJ495791.1|OSA495791 Oryza sativa (japonica cultivar-group) mRNA for TOM2 protein
          Length = 1606

 Score =  375 bits (189), Expect = e-100
 Identities = 345/396 (87%), Gaps = 1/396 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gctgaaccgtattctgatgcagcacaggnatgggtatcaagaaattccagatgaaagtct 60
            |||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||| |
Sbjct: 706  gctgaaccatattctgctgcagcacaggaa-gggtatcaagaaattccagatgaaagttt 764

                                                                        
Query: 61   tgctcctgttcgtgctgccccttctgtacaagtcgatgaggcttttgaggtggctcgtaa 120
            ||| || || |  | ||  ||| |||| |||||| |||| ||||||||||||||||||||
Sbjct: 765  tgcgccagtccacgttgttcctgctgtgcaagtcaatgaagcttttgaggtggctcgtaa 824

                                                                        
Query: 121  tagcgttgaacttctttccacggtgctatcatcatctccacaaaaagaggctctggagga 180
            ||||||||||||||||||||||||||| || || ||||||||||||||||||||  ||||
Sbjct: 825  tagcgttgaacttctttccacggtgctttcttcttctccacaaaaagaggctctcaagga 884

                                                                        
Query: 181  tgacttgactaccaccctggtccagcaatgccaacagtgtcaacacacgatccagagaat 240
            |||| |||||||||||||||| |||||||||||||||||||| | ||| |||||||||||
Sbjct: 885  tgacctgactaccaccctggttcagcaatgccaacagtgtcagcgcaccatccagagaat 944

                                                                        
Query: 241  cgtcgagactgcaggtgataacgaggctcaactcttcgaggcactgagcatccacgatga 300
            | | ||||| || ||||| ||||||||||| ||||| |||||| ||||  ||||||||||
Sbjct: 945  cattgagacggctggtgacaacgaggctcagctctttgaggcattgagtgtccacgatga 1004

                                                                        
Query: 301  acttcagaaagttctgtccaagtacgaagacctcaaggagcccattgtcgcagagcctga 360
            |||| |||| ||||| ||||||||  |||| |||||||| ||  |||| |||||||||||
Sbjct: 1005 acttgagaaggttctctccaagtataaagaactcaaggaacctgttgttgcagagcctga 1064

                                                
Query: 361  gccagaaccagcgatgattccagtcacggtggagcc 396
            | |||| ||||| |||||||||||||| ||||||||
Sbjct: 1065 ggcagagccagccatgattccagtcaccgtggagcc 1100



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                        
Query: 476  gatgacttgcttcaggatcttgatgacatgatctttggtaagaaagccggcacctcctct 535
            ||||| ||||||||||||||||| |||||||| ||||| ||||| | ||||||||| |||
Sbjct: 1159 gatgagttgcttcaggatcttgacgacatgatatttggcaagaagggcggcacctcatct 1218

                    
Query: 536  cagcagga 543
            ||||||||
Sbjct: 1219 cagcagga 1226
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>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete
             sequence
          Length = 64582

 Score =  206 bits (104), Expect = 6e-50
 Identities = 191/220 (86%)
 Strand = Plus / Plus

                                                                         
Query: 177   aggatgacttgactaccaccctggtccagcaatgccaacagtgtcaacacacgatccaga 236
             |||||||| |||||||||||||||| |||||||||||||||||||| | ||| |||||||
Sbjct: 49642 aggatgacctgactaccaccctggttcagcaatgccaacagtgtcagcgcaccatccaga 49701

                                                                         
Query: 237   gaatcgtcgagactgcaggtgataacgaggctcaactcttcgaggcactgagcatccacg 296
             ||||| | ||||| || ||||| ||||||||||| ||||| |||||| ||||  ||||||
Sbjct: 49702 gaatcattgagacggctggtgacaacgaggctcagctctttgaggcattgagtgtccacg 49761

                                                                         
Query: 297   atgaacttcagaaagttctgtccaagtacgaagacctcaaggagcccattgtcgcagagc 356
             |||||||| |||| ||||| ||||||||  |||| |||||||| ||  |||| |||||||
Sbjct: 49762 atgaacttgagaaggttctctccaagtataaagaactcaaggaacctgttgttgcagagc 49821

                                                     
Query: 357   ctgagccagaaccagcgatgattccagtcacggtggagcc 396
             ||||| |||| ||||| |||||||||||||| ||||||||
Sbjct: 49822 ctgaggcagagccagccatgattccagtcaccgtggagcc 49861



 Score =  180 bits (91), Expect = 3e-42
 Identities = 154/174 (88%), Gaps = 1/174 (0%)
 Strand = Plus / Plus

                                                                         
Query: 1     gctgaaccgtattctgatgcagcacaggnatgggtatcaagaaattccagatgaaagtct 60
             |||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||| |
Sbjct: 49230 gctgaaccatattctgctgcagcacaggaa-gggtatcaagaaattccagatgaaagttt 49288

                                                                         
Query: 61    tgctcctgttcgtgctgccccttctgtacaagtcgatgaggcttttgaggtggctcgtaa 120
             ||| || || |  | ||  ||| |||| |||||| |||| ||||||||||||||||||||
Sbjct: 49289 tgcgccagtccacgttgttcctgctgtgcaagtcaatgaagcttttgaggtggctcgtaa 49348

                                                                   
Query: 121   tagcgttgaacttctttccacggtgctatcatcatctccacaaaaagaggctct 174
             ||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 49349 tagcgttgaacttctttccacggtgctttcttcttctccacaaaaagaggctct 49402



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                         
Query: 476   gatgacttgcttcaggatcttgatgacatgatctttggtaagaaagccggcacctcctct 535
             ||||| ||||||||||||||||| |||||||| ||||| ||||| | ||||||||| |||
Sbjct: 49920 gatgagttgcttcaggatcttgacgacatgatatttggcaagaagggcggcacctcatct 49979

                     
Query: 536   cagcagga 543
             ||||||||
Sbjct: 49980 cagcagga 49987
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  206 bits (104), Expect = 6e-50
 Identities = 191/220 (86%)
 Strand = Plus / Plus

                                                                            
Query: 177      aggatgacttgactaccaccctggtccagcaatgccaacagtgtcaacacacgatccaga 236
                |||||||| |||||||||||||||| |||||||||||||||||||| | ||| |||||||
Sbjct: 22533924 aggatgacctgactaccaccctggttcagcaatgccaacagtgtcagcgcaccatccaga 22533983

                                                                            
Query: 237      gaatcgtcgagactgcaggtgataacgaggctcaactcttcgaggcactgagcatccacg 296
                ||||| | ||||| || ||||| ||||||||||| ||||| |||||| ||||  ||||||
Sbjct: 22533984 gaatcattgagacggctggtgacaacgaggctcagctctttgaggcattgagtgtccacg 22534043

                                                                            
Query: 297      atgaacttcagaaagttctgtccaagtacgaagacctcaaggagcccattgtcgcagagc 356
                |||||||| |||| ||||| ||||||||  |||| |||||||| ||  |||| |||||||
Sbjct: 22534044 atgaacttgagaaggttctctccaagtataaagaactcaaggaacctgttgttgcagagc 22534103

                                                        
Query: 357      ctgagccagaaccagcgatgattccagtcacggtggagcc 396
                ||||| |||| ||||| |||||||||||||| ||||||||
Sbjct: 22534104 ctgaggcagagccagccatgattccagtcaccgtggagcc 22534143



 Score =  180 bits (91), Expect = 3e-42
 Identities = 154/174 (88%), Gaps = 1/174 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1        gctgaaccgtattctgatgcagcacaggnatgggtatcaagaaattccagatgaaagtct 60
                |||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||| |
Sbjct: 22533512 gctgaaccatattctgctgcagcacaggaa-gggtatcaagaaattccagatgaaagttt 22533570

                                                                            
Query: 61       tgctcctgttcgtgctgccccttctgtacaagtcgatgaggcttttgaggtggctcgtaa 120
                ||| || || |  | ||  ||| |||| |||||| |||| ||||||||||||||||||||
Sbjct: 22533571 tgcgccagtccacgttgttcctgctgtgcaagtcaatgaagcttttgaggtggctcgtaa 22533630

                                                                      
Query: 121      tagcgttgaacttctttccacggtgctatcatcatctccacaaaaagaggctct 174
                ||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 22533631 tagcgttgaacttctttccacggtgctttcttcttctccacaaaaagaggctct 22533684



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                            
Query: 476      gatgacttgcttcaggatcttgatgacatgatctttggtaagaaagccggcacctcctct 535
                ||||| ||||||||||||||||| |||||||| ||||| ||||| | ||||||||| |||
Sbjct: 22534202 gatgagttgcttcaggatcttgacgacatgatatttggcaagaagggcggcacctcatct 22534261

                        
Query: 536      cagcagga 543
                ||||||||
Sbjct: 22534262 cagcagga 22534269
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  206 bits (104), Expect = 6e-50
 Identities = 191/220 (86%)
 Strand = Plus / Plus

                                                                            
Query: 177      aggatgacttgactaccaccctggtccagcaatgccaacagtgtcaacacacgatccaga 236
                |||||||| |||||||||||||||| |||||||||||||||||||| | ||| |||||||
Sbjct: 22546392 aggatgacctgactaccaccctggttcagcaatgccaacagtgtcagcgcaccatccaga 22546451

                                                                            
Query: 237      gaatcgtcgagactgcaggtgataacgaggctcaactcttcgaggcactgagcatccacg 296
                ||||| | ||||| || ||||| ||||||||||| ||||| |||||| ||||  ||||||
Sbjct: 22546452 gaatcattgagacggctggtgacaacgaggctcagctctttgaggcattgagtgtccacg 22546511

                                                                            
Query: 297      atgaacttcagaaagttctgtccaagtacgaagacctcaaggagcccattgtcgcagagc 356
                |||||||| |||| ||||| ||||||||  |||| |||||||| ||  |||| |||||||
Sbjct: 22546512 atgaacttgagaaggttctctccaagtataaagaactcaaggaacctgttgttgcagagc 22546571

                                                        
Query: 357      ctgagccagaaccagcgatgattccagtcacggtggagcc 396
                ||||| |||| ||||| |||||||||||||| ||||||||
Sbjct: 22546572 ctgaggcagagccagccatgattccagtcaccgtggagcc 22546611



 Score =  180 bits (91), Expect = 3e-42
 Identities = 154/174 (88%), Gaps = 1/174 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1        gctgaaccgtattctgatgcagcacaggnatgggtatcaagaaattccagatgaaagtct 60
                |||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||| |
Sbjct: 22545980 gctgaaccatattctgctgcagcacaggaa-gggtatcaagaaattccagatgaaagttt 22546038

                                                                            
Query: 61       tgctcctgttcgtgctgccccttctgtacaagtcgatgaggcttttgaggtggctcgtaa 120
                ||| || || |  | ||  ||| |||| |||||| |||| ||||||||||||||||||||
Sbjct: 22546039 tgcgccagtccacgttgttcctgctgtgcaagtcaatgaagcttttgaggtggctcgtaa 22546098

                                                                      
Query: 121      tagcgttgaacttctttccacggtgctatcatcatctccacaaaaagaggctct 174
                ||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 22546099 tagcgttgaacttctttccacggtgctttcttcttctccacaaaaagaggctct 22546152



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                            
Query: 476      gatgacttgcttcaggatcttgatgacatgatctttggtaagaaagccggcacctcctct 535
                ||||| ||||||||||||||||| |||||||| ||||| ||||| | ||||||||| |||
Sbjct: 22546670 gatgagttgcttcaggatcttgacgacatgatatttggcaagaagggcggcacctcatct 22546729

                        
Query: 536      cagcagga 543
                ||||||||
Sbjct: 22546730 cagcagga 22546737
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>dbj|AK067871.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126G20, full
           insert sequence
          Length = 1169

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                       
Query: 476 gatgacttgcttcaggatcttgatgacatgatctttggtaagaaagccggcacctcctct 535
           ||||| ||||||||||||||||| |||||||| ||||| ||||| | ||||||||| |||
Sbjct: 746 gatgagttgcttcaggatcttgacgacatgatatttggcaagaagggcggcacctcatct 805

                   
Query: 536 cagcagga 543
           ||||||||
Sbjct: 806 cagcagga 813
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>ref|XM_467289.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1624

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 112/140 (80%)
 Strand = Plus / Plus

                                                                        
Query: 101  gcttttgaggtggctcgtaatagcgttgaacttctttccacggtgctatcatcatctcca 160
            |||||||| ||||||||||| ||| | ||||||||||| || || || ||||| ||||| 
Sbjct: 944  gcttttgatgtggctcgtaacagcatagaacttctttcaactgttctttcatcctctcct 1003

                                                                        
Query: 161  caaaaagaggctctggaggatgacttgactaccaccctggtccagcaatgccaacagtgt 220
            ||  | || ||| || |||||||||||||  |||| || || || |||||| | || | |
Sbjct: 1004 cagcaggatgctttgcaggatgacttgacatccactcttgtgcaacaatgctaccaatct 1063

                                
Query: 221  caacacacgatccagagaat 240
            || ||||| |||||||||||
Sbjct: 1064 cagcacactatccagagaat 1083
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>gb|BT013889.1| Lycopersicon esculentum clone 132874R, mRNA sequence
          Length = 1537

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                        
Query: 359  gagccagaaccagcgatgattccagtcacggtggagcccgagga 402
            ||||||||||| || |||||||||||| | ||||||||||||||
Sbjct: 1100 gagccagaacctgccatgattccagtcgcagtggagcccgagga 1143



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 491  gatcttgatgacatgatctttggtaagaaagc 522
            ||||||||||| ||||| |||||||| |||||
Sbjct: 1238 gatcttgatgagatgatttttggtaaaaaagc 1269
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>emb|AJ495787.1|OSA495787 Oryza sativa (japonica cultivar-group) mRNA for TOM1 protein
          Length = 1740

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 112/140 (80%)
 Strand = Plus / Plus

                                                                        
Query: 101  gcttttgaggtggctcgtaatagcgttgaacttctttccacggtgctatcatcatctcca 160
            |||||||| ||||||||||| ||| | ||||||||||| || || || ||||| ||||| 
Sbjct: 943  gcttttgatgtggctcgtaacagcatagaacttctttcaactgttctttcatcctctcct 1002

                                                                        
Query: 161  caaaaagaggctctggaggatgacttgactaccaccctggtccagcaatgccaacagtgt 220
            ||  | || ||| || |||||||||||||  |||| || || || |||||| | || | |
Sbjct: 1003 cagcaggatgctttgcaggatgacttgacatccactcttgtgcaacaatgctaccaatct 1062

                                
Query: 221  caacacacgatccagagaat 240
            || ||||| |||||||||||
Sbjct: 1063 cagcacactatccagagaat 1082
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>dbj|AK066018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047D24, full
            insert sequence
          Length = 1624

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 112/140 (80%)
 Strand = Plus / Plus

                                                                        
Query: 101  gcttttgaggtggctcgtaatagcgttgaacttctttccacggtgctatcatcatctcca 160
            |||||||| ||||||||||| ||| | ||||||||||| || || || ||||| ||||| 
Sbjct: 944  gcttttgatgtggctcgtaacagcatagaacttctttcaactgttctttcatcctctcct 1003

                                                                        
Query: 161  caaaaagaggctctggaggatgacttgactaccaccctggtccagcaatgccaacagtgt 220
            ||  | || ||| || |||||||||||||  |||| || || || |||||| | || | |
Sbjct: 1004 cagcaggatgctttgcaggatgacttgacatccactcttgtgcaacaatgctaccaatct 1063

                                
Query: 221  caacacacgatccagagaat 240
            || ||||| |||||||||||
Sbjct: 1064 cagcacactatccagagaat 1083
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 101      gcttttgaggtggctcgtaatagcgttgaacttctttccacggtgctatcatcatctcc 159
                |||||||| ||||||||||| ||| | ||||||||||| || || || ||||| |||||
Sbjct: 28693746 gcttttgatgtggctcgtaacagcatagaacttctttcaactgttctttcatcctctcc 28693804
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>dbj|AP005868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0666E12
          Length = 47765

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 101   gcttttgaggtggctcgtaatagcgttgaacttctttccacggtgctatcatcatctcc 159
             |||||||| ||||||||||| ||| | ||||||||||| || || || ||||| |||||
Sbjct: 41759 gcttttgatgtggctcgtaacagcatagaacttctttcaactgttctttcatcctctcc 41817
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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0459B01
          Length = 163087

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 101   gcttttgaggtggctcgtaatagcgttgaacttctttccacggtgctatcatcatctcc 159
             |||||||| ||||||||||| ||| | ||||||||||| || || || ||||| |||||
Sbjct: 10319 gcttttgatgtggctcgtaacagcatagaacttctttcaactgttctttcatcctctcc 10377
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>ref|XM_744404.1| Aspergillus fumigatus Af293 Ras GTPase activating protein
            (Afu2g03640) partial mRNA
          Length = 5253

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 350  gcagagcctgagccagaaccag 371
            ||||||||||||||||||||||
Sbjct: 1372 gcagagcctgagccagaaccag 1393
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>gb|AC093360.7| Mus musculus chromosome 3, clone RP23-57F18, complete sequence
          Length = 275076

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 37    tcaagaaattccagatgaaagtctt 61
             |||||||||||||||||||| ||||
Sbjct: 65508 tcaagaaattccagatgaaaatctt 65532
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>emb|CR955009.1| Medicago truncatula chromosome 5 clone mth2-38i20, COMPLETE SEQUENCE
          Length = 123473

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 477   atgacttgcttcaggatcttg 497
             |||||||||||||||||||||
Sbjct: 60994 atgacttgcttcaggatcttg 60974
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>gb|AC164401.4| Mus musculus chromosome 3, clone RP23-447D6, complete sequence
          Length = 214398

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 37    tcaagaaattccagatgaaagtctt 61
             |||||||||||||||||||| ||||
Sbjct: 92657 tcaagaaattccagatgaaaatctt 92633
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>gb|AC034122.12| Mus musculus chromosome 1, clone RP23-169C19, complete sequence
          Length = 208469

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 379   tccagtcacggtggagcccgaggaa 403
             ||||| |||||||||||||||||||
Sbjct: 84159 tccagccacggtggagcccgaggaa 84135
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>gb|AC117749.6| Mus musculus chromosome 1, clone RP24-319I19, complete sequence
          Length = 174793

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 379   tccagtcacggtggagcccgaggaa 403
             ||||| |||||||||||||||||||
Sbjct: 20394 tccagccacggtggagcccgaggaa 20370
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>emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chromosome 16, complete
              sequence
          Length = 229346

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 352    agagcctgagccagaaccagc 372
              |||||||||||||||||||||
Sbjct: 109385 agagcctgagccagaaccagc 109405
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>gb|U82624.1|MMU82624 Mus musculus amyloid precursor protein (APP) gene, partial cds,
           exons 16 and 17
          Length = 7097

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 352 agagcctgagccagaaccagc 372
           |||||||||||||||||||||
Sbjct: 117 agagcctgagccagaaccagc 97
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     tgctcctgttcgtgctgccc 80
              ||||||||||||||||||||
Sbjct: 500920 tgctcctgttcgtgctgccc 500901
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>emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromosome 7, complete
             sequence
          Length = 122162

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 492   atcttgatgacatgatctttggta 515
             |||||||| |||||||||||||||
Sbjct: 28960 atcttgattacatgatctttggta 28937
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>gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome 1, complete sequence
          Length = 170885

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   gacctcaaggagcccattgt 348
             ||||||||||||||||||||
Sbjct: 94152 gacctcaaggagcccattgt 94171
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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 497    gatgacatgatctttggtaa 516
              ||||||||||||||||||||
Sbjct: 860594 gatgacatgatctttggtaa 860613
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>emb|AL021307.1|HS106B9 Human DNA sequence from clone RP1-106B9 on chromosome Xq21, complete
             sequence
          Length = 109155

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   actaccaccctggtccagca 207
             ||||||||||||||||||||
Sbjct: 90802 actaccaccctggtccagca 90821
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>gb|AC163436.3| Mus musculus chromosome 1, clone RP23-102H12, complete sequence
          Length = 198253

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   acttcagaaagttctgtcca 320
             ||||||||||||||||||||
Sbjct: 93707 acttcagaaagttctgtcca 93726
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>gb|AC021613.14| Homo sapiens chromosome 8, clone RP11-279N21, complete sequence
          Length = 143960

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   ggtgctatcatcatctccac 161
             ||||||||||||||||||||
Sbjct: 17928 ggtgctatcatcatctccac 17947
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>gb|AC113018.7| Mus musculus chromosome 5, clone RP23-183C18, complete sequence
          Length = 215671

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     atgggtatcaagaaattcca 49
              ||||||||||||||||||||
Sbjct: 108560 atgggtatcaagaaattcca 108579
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>gb|AC102900.12| Mus musculus chromosome 1, clone RP24-315J13, complete sequence
          Length = 192545

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   acttcagaaagttctgtcca 320
             ||||||||||||||||||||
Sbjct: 59236 acttcagaaagttctgtcca 59255
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>dbj|AK114259.1| Ciona intestinalis cDNA, clone:cicl050a23, full insert sequence
          Length = 1787

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 362 ccagaaccagcgatgattcc 381
           ||||||||||||||||||||
Sbjct: 619 ccagaaccagcgatgattcc 600
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>gb|AC132400.3| Mus musculus BAC clone RP23-400A19 from 1, complete sequence
          Length = 218935

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 gacctcaaggagcccattgt 348
           ||||||||||||||||||||
Sbjct: 145 gacctcaaggagcccattgt 164
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>gb|AC172750.1| Mus musculus BAC clone RP24-177J9 from chromosome 7, complete sequence
          Length = 145766

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    atgacttgactaccaccctg 199
              ||||||||||||||||||||
Sbjct: 123763 atgacttgactaccaccctg 123744
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>gb|AC167813.4| Mus musculus BAC clone RP24-233L18 from chromosome 7, complete sequence
          Length = 172485

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   atgacttgactaccaccctg 199
             ||||||||||||||||||||
Sbjct: 62962 atgacttgactaccaccctg 62943


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,473,260
Number of Sequences: 3902068
Number of extensions: 4473260
Number of successful extensions: 93125
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92963
Number of HSP's gapped (non-prelim): 157
length of query: 585
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 562
effective length of database: 17,143,297,704
effective search space: 9634533309648
effective search space used: 9634533309648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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