Clone Information

BLAST Search Result

Clone Name	basdl19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IF2_VIBPA (Q87M02) Translation initiation factor IF-2	36	0.080
2	RPC7_HUMAN (O15318) DNA-directed RNA polymerase III 32 kDa polyp...	35	0.10
3	CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-ch...	34	0.23
4	SPT6H_CAEEL (P34703) Suppressor of Ty 6 homolog (Abnormal embryo...	33	0.40
5	MUTS2_AQUAE (O67287) MutS2 protein	32	0.88
6	NSBP1_HUMAN (P82970) Nucleosome-binding protein 1	32	1.1
7	IWS1A_XENLA (Q6DE96) IWS1-like protein A	32	1.5
8	RENT2_HUMAN (Q9HAU5) Regulator of nonsense transcripts 2 (Nonsen...	31	2.0
9	MNN4_YEAST (P36044) Protein MNN4	31	2.0
10	SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein	31	2.0
11	YKD1_CAEEL (Q03560) Hypothetical protein B0464.2 in chromosome III	31	2.0
12	ASPX_MOUSE (P50289) Acrosomal protein SP-10 precursor (Acrosomal...	31	2.0
13	EVC_HUMAN (P57679) Ellis-van Creveld syndrome protein (DWF-1)	31	2.6
14	PFDA_HALMA (Q5UY26) Prefoldin alpha subunit (GimC alpha subunit)	31	2.6
15	C13A2_CAEEL (Q27518) Putative cytochrome P450 CYP13A2 (EC 1.14.-.-)	31	2.6
16	VG48_SHV21 (Q01033) Hypothetical gene 48 protein	30	3.3
17	UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream-bin...	30	3.3
18	DYXC1_MOUSE (Q8R368) Dyslexia susceptibility 1 candidate gene 1 ...	30	3.3
19	MYST4_MOUSE (Q8BRB7) Histone acetyltransferase MYST4 (EC 2.3.1.4...	30	3.3
20	PFDA_AQUAE (O66961) Putative prefoldin alpha subunit	30	3.3
21	NFM_HUMAN (P07197) Neurofilament triplet M protein (160 kDa neur...	30	3.3
22	GOGA4_HUMAN (Q13439) Golgin subfamily A member 4 (Trans-Golgi p2...	30	3.3
23	UBF1A_XENLA (P25979) Nucleolar transcription factor 1-A (Upstrea...	30	4.4
24	FLNB_MOUSE (Q80X90) Filamin-B (FLN-B) (Beta-filamin) (Actin-bind...	30	4.4
25	UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream-b...	30	4.4
26	GAR2_SCHPO (P41891) Protein gar2	30	4.4
27	CIC_HUMAN (Q96RK0) Protein capicua homolog	30	4.4
28	SWC4_NEUCR (Q870Q1) SWR1-complex protein 4	30	4.4
29	THYX_PYRKO (Q5JI17) Thymidylate synthase thyX (EC 2.1.1.148) (TS...	30	5.7
30	YD186_YEAST (P48568) Hypothetical 32.2 kDa protein in PPH22-VMA1...	30	5.7
31	PP220_ASFB7 (Q08358) Polyprotein pp220 (220 kDa polyprotein) [Co...	30	5.7
32	DEP1_YEAST (P31385) Protein DEP1	30	5.7
33	ZC11A_MOUSE (Q6NZF1) Zinc finger CCCH-type domain-containing pro...	30	5.7
34	Y096_MYCGE (P47342) Hypothetical protein MG096	30	5.7
35	ARI4A_HUMAN (P29374) AT-rich interactive domain-containing prote...	29	7.5
36	FLNB_HUMAN (O75369) Filamin-B (FLN-B) (Beta-filamin) (Actin-bind...	29	7.5
37	EGFL7_HUMAN (Q9UHF1) EGF-like domain-containing protein 7 precur...	29	7.5
38	YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative spl...	29	7.5
39	RNR_UREPA (Q9PR88) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	29	7.5
40	PALA_MAGGR (Q51NJ3) pH-response regulator protein palA/RIM20	29	7.5
41	YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative s...	29	7.5
42	RRP3_YEAST (P38712) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-...	29	7.5
43	FAM9A_HUMAN (Q8IZU1) Protein FAM9A	29	7.5
44	MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle II...	29	9.7
45	LMNA_CHICK (P13648) Lamin-A	29	9.7
46	HS90A_CHICK (P11501) Heat shock protein HSP 90-alpha	29	9.7
47	PEN3_ADE02 (P03276) Penton protein (Virion component III) (Pento...	29	9.7
48	CYLC2_BOVIN (Q28092) Cylicin-2 (Cylicin II) (Multiple-band polyp...	29	9.7

>IF2_VIBPA (Q87M02) Translation initiation factor IF-2|
          Length = 905

 Score = 35.8 bits (81), Expect = 0.080
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
 Frame = +1

Query: 163 EAPAAAMDDCIRRLEEEKSKI--EVFRRELPLCARLLADVIDVMKKEVEEKKRGGDRGEN 336
           EA   A +   R  EE   ++  E  +RE    A+  A+  D +K+E EEK +     + 
Sbjct: 106 EAKREAEEVAKREAEEAAKRVAEETAKREAEEAAKREAE--DAVKREAEEKAKREAEEKA 163

Query: 337 KEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRRSSEPES 468
           K DA    + N    A+    + ++ + A ++ DE +R  E E+
Sbjct: 164 KRDADTNAQRNAEEKAKRDAEEKIKQEAARKEADELKRRQEEEA 207

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>RPC7_HUMAN (O15318) DNA-directed RNA polymerase III 32 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase III C32 subunit)
          Length = 233

 Score = 35.4 bits (80), Expect = 0.10
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = +1

Query: 265 LADVIDVMKKEVEEKKRG-GDRG--ENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQ 435
           L +  DV+KK VE +KRG G++   EN+E  G+ +KS          GD    DDA+E++
Sbjct: 135 LTNTEDVLKKMVELEKRGDGEKSDEENEEKEGSKEKSK--------EGDDDDDDDAAEQE 186

Query: 436 DERRRSSEPES 468
           +      E E+
Sbjct: 187 EYDEEEQEEEN 197

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>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel|
           [Contains: Glutamic acid-rich protein (GARP);
           Cyclic-nucleotide-gated cation channel 4 (CNG channel 4)
           (CNG-4) (Cyclic nucleotide-gated cation channel
           modulatory subunit)]
          Length = 1394

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
 Frame = +1

Query: 205 EEEKSKI-EVFRRELPLCARLLADVIDVMKKEVEEKKRGGDR----GENKEDAGAGDKSN 369
           +EEK K+ E   RELP       D  +  +   EE++ G ++    GE KE+    +K  
Sbjct: 336 DEEKGKVVEQTPRELPRIQEEKEDEEEEKEDGEEEEEEGREKEEEEGEEKEEEEGREKEE 395

Query: 370 WMSTAQLWTGDSVRGDDASEKQDERRRSSEPESHDG 477
                +   G     ++  EK+DE  R  E E   G
Sbjct: 396 EEGEKKEEEGREKEEEEGGEKEDEEGREKEEEEGRG 431

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>SPT6H_CAEEL (P34703) Suppressor of Ty 6 homolog (Abnormal embryogenesis protein|
           5)
          Length = 1521

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 310 KRGGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRRSSEPESHDGA 480
           +RG D G+ ++D G GD+  + S ++    D +  D  + ++  +R   +    +GA
Sbjct: 140 ERGSDDGDRRKDRGRGDRGGYGSESERSEDDFIEDDGDAPRRHRKRHRGDENLPEGA 196

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>MUTS2_AQUAE (O67287) MutS2 protein|
          Length = 762

 Score = 32.3 bits (72), Expect = 0.88
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = +1

Query: 136 AAKSLGRAREAPAAAMD---DCIRRLEEEKSKIEVFRRELPLCARLLADVIDVMKKEVEE 306
           A + +G   E    AM+   D +++ EEE  K+E  R+EL    +   + ++ ++KE EE
Sbjct: 502 AKRHVGEFGEQYIKAMEKLSDYVKKYEEEFRKLEELRKEL----QKEKEEVEKLRKEYEE 557

Query: 307 KKRGGDRGENKE 342
            KR G +   KE
Sbjct: 558 AKRKGWKEAYKE 569

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>NSBP1_HUMAN (P82970) Nucleosome-binding protein 1|
          Length = 282

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +1

Query: 289 KKEVEEKKRGGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRRSSEPES 468
           +KE E++K  GD  EN++    GDK                G D   K+DE+ R    E 
Sbjct: 196 EKEEEDRKETGDGKENEDGKEKGDKK--------------EGKDVKVKEDEKEREDGKED 241

Query: 469 HDG 477
             G
Sbjct: 242 EGG 244

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>IWS1A_XENLA (Q6DE96) IWS1-like protein A|
          Length = 836

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
 Frame = +1

Query: 268 ADVIDVMKKEVEEKKRGGDRGENK---------EDAGAGDKSNWMSTAQLWTGDSVRGDD 420
           +D +D  K +  E    G++   K         ED  A DKS    +  L  G+    D 
Sbjct: 377 SDKVDGKKLQASESDEEGEKASKKKKSNIVSDSEDEDAADKSGNKKSRILSDGEDSDSDA 436

Query: 421 ASEKQDERRR---SSEPESHD 474
           ASEK  ++++   SS+ E  D
Sbjct: 437 ASEKPKQKKKKSASSDSEEED 457

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>RENT2_HUMAN (Q9HAU5) Regulator of nonsense transcripts 2 (Nonsense mRNA|
           reducing factor 2) (Up-frameshift suppressor 2 homolog)
           (hUpf2)
          Length = 1272

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 26/90 (28%), Positives = 45/90 (50%)
 Frame = +1

Query: 121 DLKMFAAKSLGRAREAPAAAMDDCIRRLEEEKSKIEVFRRELPLCARLLADVIDVMKKEV 300
           D+K+ A K + +A E       D  +RLE++K K E   R+     ++ A+  +  KKE 
Sbjct: 40  DIKLTAKKEVSKAPE-------DKKKRLEDDKRKKEDKERKKKDEEKVKAEE-ESKKKEE 91

Query: 301 EEKKRGGDRGENKEDAGAGDKSNWMSTAQL 390
           EEKK+  +    K++  A  +    + AQ+
Sbjct: 92  EEKKKHQEEERKKQEEQAKRQQEEEAAAQM 121

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>MNN4_YEAST (P36044) Protein MNN4|
          Length = 1178

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +1

Query: 205  EEEKSKIEVFRRELPLCARLLADVIDVMKKEVEEKKRGGDRGENKEDAGAGDKSNWMSTA 384
            EE+K K E  +++     +   +  +  KKE EEKK+  +  + K++     K       
Sbjct: 1048 EEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKQEEEEKKKKEEEEKK 1107

Query: 385  QLWTGDSVRGDDASEK--QDERRRSSEPE 465
            +   G+ ++ +D   K  +DE ++ +E E
Sbjct: 1108 KQEEGEKMKNEDEENKKNEDEEKKKNEEE 1136

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>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein|
          Length = 977

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 526 ANAGGTGSPRP*TARQRRHEIPAPRTSSSHPASRK 422
           A A G G+P P +AR++R  +PA RT     A R+
Sbjct: 596 APAPGPGAPEPPSAREQRISVPAARTGILQEARRR 630

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>YKD1_CAEEL (Q03560) Hypothetical protein B0464.2 in chromosome III|
          Length = 1150

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 21/113 (18%)
 Frame = +1

Query: 196  RRLEEEKSKIEVFRRELPLCARLLADVIDVMK------KEVEEKKRGGDRGENKEDAGAG 357
            + +EE ++K E  +++L     L    I++ K      + VEEK+RGG   + + D G  
Sbjct: 892  KMIEEARAKEEAEKQKLEDMKNLRLSFIEMTKDVLRLPEIVEEKRRGGGGRKRRNDDG-D 950

Query: 358  DKSNWMSTAQLWTGDSVRGDD---------------ASEKQDERRRSSEPESH 471
            +  N  S A  + G+   G+D               AS K+ ERR S  P+S+
Sbjct: 951  EFVNDSSDAGNYDGEE-GGEDGERRERRKKDKAAKKASRKKRERRDSGGPDSN 1002

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>ASPX_MOUSE (P50289) Acrosomal protein SP-10 precursor (Acrosomal vesicle|
           protein 1) (MSA-63)
          Length = 261

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
 Frame = +1

Query: 148 LGRAREAPAAAMDDCIRRLEEEKSKIEVFRRELPLCARLLADVIDVMKKEVEEKKRGGDR 327
           LG A+ AP    ++ +  ++++ S  ++    L L     +D   + +  ++EK   G  
Sbjct: 12  LGSAQGAPPGQPEELLDSVDQQASVQQLSSEYLSLANP--SDAEALYETPLDEKTLSGHS 69

Query: 328 GENKEDA-------GAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRRSSEPES 468
              +E +        AG+ S+   +++  +GD + G+  SE   E   S E  S
Sbjct: 70  SSEQESSEHAVAEHSAGEHSSGEQSSEHMSGDHMSGEHLSEHTSEEHSSGEHTS 123

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>EVC_HUMAN (P57679) Ellis-van Creveld syndrome protein (DWF-1)|
          Length = 992

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 244  LPLCARLLADVIDVMKKEVEEKKRGGDRGENKEDAGAGDK-SNWMSTAQLWTGDSVRGDD 420
            LP    LL   +   +K+   ++RG     N ED  +GD+ S  +S+ +L   +S  GD 
Sbjct: 920  LPAKRGLLEKPLRTKRKKPLPQERGDLGVPNNEDLASGDQTSGSLSSKRLSQQESEAGDS 979

Query: 421  ASEKQDERRRSS 456
             + K+  +RRS+
Sbjct: 980  GNSKKMLKRRSN 991

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>PFDA_HALMA (Q5UY26) Prefoldin alpha subunit (GimC alpha subunit)|
          Length = 154

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = +1

Query: 7   TFSCNKSVKIPFGAPVRCKPNPMGLDVGEIGMGADLSLDLKMFAAKSLGRAREAPAAAMD 186
           T     +V++P G     +     +D   + +G   S + +   A S     E     +D
Sbjct: 54  TLDSGSTVQVPLGGDAYIRATIEDIDEVVVSLGGGYSAEREQDGAVS---TLETKKETLD 110

Query: 187 DCIRRLEEEKSKIEVFRREL 246
           D I  L+EEK+++E    EL
Sbjct: 111 DHISDLQEEKAEVETEMEEL 130

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>C13A2_CAEEL (Q27518) Putative cytochrome P450 CYP13A2 (EC 1.14.-.-)|
          Length = 515

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 373 MSTAQLWTGDSVRGDDASEKQDERRRSSEPESHDGAVLPF 492
           M T  L     + G+D  E + ER  + EP  H GA LPF
Sbjct: 414 MDTWSLHYDPELWGEDVKEFKPERWSTDEPLEHKGAYLPF 453

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>VG48_SHV21 (Q01033) Hypothetical gene 48 protein|
          Length = 797

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +1

Query: 295 EVEEKKRGGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRRSSEPESHD 474
           E +EK+ G D G++ ED G  +  +         GD   G+D  E +D+     E E  +
Sbjct: 427 EKDEKEEGEDEGDDGEDEGEDEGEDEGDEGD--EGD--EGEDEGEDEDDEEDEGEDEGDE 482

Query: 475 G 477
           G
Sbjct: 483 G 483

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>UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1)
          Length = 764

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +1

Query: 301 EEKKRGGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRRSSEPESHDGA 480
           EE++   + G++ ED G  D S   S  +   GD    DD  E  DE     E    +G+
Sbjct: 691 EEEEEDDENGDSSEDGG--DSSESSSEDESEDGDENEDDDDDEDDDEDDDEDEDNESEGS 748

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>DYXC1_MOUSE (Q8R368) Dyslexia susceptibility 1 candidate gene 1 protein homolog|
          Length = 420

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +1

Query: 280 DVMKKEVEEKKRGGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRRSSE 459
           ++MK E EE+K+  D  EN+      +   W    +    D  +     EK  ER+++ E
Sbjct: 132 EMMKIEEEERKKIEDMKENERKKATSELEAWKECQK--KADGQKRVQRKEKPPERKQAEE 189

Query: 460 PESHDGAVLPFKA 498
            ++     LP KA
Sbjct: 190 TKALKPRGLPRKA 202

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>MYST4_MOUSE (Q8BRB7) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            4) (Querkopf protein)
          Length = 1872

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
 Frame = +1

Query: 271  DVIDVMKKEVEEKKRGGDRGENKEDA------------GAGDKSNWMSTAQLWTGDSVRG 414
            D  D+++ E E ++ G + GE +E              GA  K N      +   D V  
Sbjct: 1146 DEEDLIRGEEEGEEEGEEEGEREEQEEEEEVTTEKDLDGAKSKENPEPEISMEKEDPVHL 1205

Query: 415  DDASEKQDERRRSSEPESHD 474
             D  E +DE    S  E HD
Sbjct: 1206 GDHEEDEDEEEEPSHNEDHD 1225

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>PFDA_AQUAE (O66961) Putative prefoldin alpha subunit|
          Length = 149

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 24/106 (22%), Positives = 45/106 (42%)
 Frame = +1

Query: 22  KSVKIPFGAPVRCKPNPMGLDVGEIGMGADLSLDLKMFAAKSLGRAREAPAAAMDDCIRR 201
           K V IP GA  + K    G+D   + +G  +S                    + D+ + R
Sbjct: 64  KEVLIPVGATAQIKAKSEGVDEVIMSIGTGIS-----------------AVMSYDEAVDR 106

Query: 202 LEEEKSKIEVFRRELPLCARLLADVIDVMKKEVEEKKRGGDRGENK 339
           + +E + +E  RR L      +AD+ + +++ +EE ++ G     K
Sbjct: 107 IRKEIAALEALRRAL---EEAIADLYNKIEELLEEVRKVGQEEAKK 149

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>NFM_HUMAN (P07197) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
           (Neurofilament 3)
          Length = 915

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 28/94 (29%), Positives = 46/94 (48%)
 Frame = +1

Query: 199 RLEEEKSKIEVFRRELPLCARLLADVIDVMKKEVEEKKRGGDRGENKEDAGAGDKSNWMS 378
           ++E+EKS++E     L      LA  +   KKE  E+K   +  E +E+  A  KS   +
Sbjct: 460 KVEDEKSEME---EALTAITEELAASMKEEKKEAAEEKE--EEPEAEEEEVAAKKSPVKA 514

Query: 379 TAQLWTGDSVRGDDASEKQDERRRSSEPESHDGA 480
           TA       V+ ++  EK++E  +  E E  +GA
Sbjct: 515 TAP-----EVK-EEEGEKEEEEGQEEEEEEDEGA 542

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>GOGA4_HUMAN (Q13439) Golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa|
           golgin) (Golgin-245) (Protein 72.1)
          Length = 2230

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +1

Query: 118 LDLKMFAAKSLGRAREAPAAAMDDCIRRLEEEKSKIEV-FRRELPLCARLLADVIDVMKK 294
           L+  +  A+    AR    A MD+ I+ +E+   +  +  ++EL   +R+  +V+DVMKK
Sbjct: 416 LEKALSTAQKTEEARRKLKAEMDEQIKTIEKTSEEERISLQQEL---SRVKQEVVDVMKK 472

Query: 295 EVEEK 309
             EE+
Sbjct: 473 SSEEQ 477

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>UBF1A_XENLA (P25979) Nucleolar transcription factor 1-A (Upstream binding|
           factor 1-A) (UBF-1-A) (xUBF-1)
          Length = 677

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 217 SKIEVFRRELPLCARLLADVIDVMKKEVEEKKRGGDRGENKEDAGA-GDKSNWMSTAQLW 393
           +KI+V   +  L A+  +D  D    + E++    D  E+KED+   GD S   S     
Sbjct: 575 AKIQVPVAKPKLVAQSKSDDDDEDDDDDEDEDDDDDEDEDKEDSSEDGDSSESSSDEDSE 634

Query: 394 TGDSVRGDDASEKQDERRRSSEPES 468
            G+    ++  E +DE     + ES
Sbjct: 635 DGEENEDEEGEEDEDEEEDDDDNES 659

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>FLNB_MOUSE (Q80X90) Filamin-B (FLN-B) (Beta-filamin) (Actin-binding-like|
            protein) (ABP-280-like protein)
          Length = 2602

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 49   PVRCKPNPMGLDVGEIGMGADLSLDLKMFAAKSLGRAREAPAAAMDDC 192
            P + K +  GL+ G +G  A+ ++D K      LG   E P  A  +C
Sbjct: 1040 PTKVKAHGPGLEGGLVGKPAEFTIDTKGAGTGGLGLTVEGPCEAKIEC 1087

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>UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1) (Autoantigen NOR-90)
          Length = 764

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +1

Query: 271 DVIDVMKKEVEEKKRGGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRR 450
           D  D   ++ +E++   + G++ ED G  D S   S  +   GD    DD  E  DE   
Sbjct: 681 DEEDEDDEDEDEEEEDDENGDSSEDGG--DSSESSSEDESEDGDENEEDDEDEDDDEDDD 738

Query: 451 SSEPESHDGA 480
             E    +G+
Sbjct: 739 EDEDNESEGS 748

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>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 292 KEVEEKKRGGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDA---SEKQDERRRSSEP 462
           ++ EEKK G     +  ++ +   S         +GDS    D+   S  +DE++R +EP
Sbjct: 192 EKTEEKKEGSSESSSDSESSSDSSSE--------SGDSDSSSDSESESSSEDEKKRKAEP 243

Query: 463 ESHD 474
            S +
Sbjct: 244 ASEE 247

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>CIC_HUMAN (Q96RK0) Protein capicua homolog|
          Length = 1608

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 23/65 (35%), Positives = 25/65 (38%)
 Frame = +1

Query: 295  EVEEKKRGGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRRSSEPESHD 474
            E    +  GD  E KE AG G K          T DSV     SE   E R +  PE   
Sbjct: 1308 ESSSGRAAGDTPERKEAAGTGKKVKVRPPPLKKTFDSVDNRVLSEVDFEERFAELPEFRP 1367

Query: 475  GAVLP 489
              VLP
Sbjct: 1368 EEVLP 1372

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>SWC4_NEUCR (Q870Q1) SWR1-complex protein 4|
          Length = 771

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
 Frame = +1

Query: 283 VMKKEVEEKKRGGDRGENKEDAG------AGDKSNWMSTAQLWTGDSVRGDDASEKQDE- 441
           V KK  EE+  GG   + ++D G      A DKS   + A     D    D  ++K+ + 
Sbjct: 583 VEKKGGEEEGEGGGADDKQKDGGGAGGDDAKDKSGESAQADEQKNDQKAEDAKAQKEQQG 642

Query: 442 RRRSSEPESHDGAVLPFKAVG 504
             +  + +  +G V+P K  G
Sbjct: 643 EGQDQQKKGEEGLVVPIKEGG 663

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>THYX_PYRKO (Q5JI17) Thymidylate synthase thyX (EC 2.1.1.148) (TS) (TSase)|
          Length = 245

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +1

Query: 262 LLADVIDVMKKEVEEKKRGGDRGENKEDA 348
           LLA+  ++MKK +E  K+  +RG+++EDA
Sbjct: 120 LLAEWKELMKKSIELYKKSVERGQHQEDA 148

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>YD186_YEAST (P48568) Hypothetical 32.2 kDa protein in PPH22-VMA1 intergenic|
           region
          Length = 277

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 28  VKIPFGAPVRCKPNPMGLDVGEIGMGADLSL 120
           V  P+ AP R K NP    V EIG G +LS+
Sbjct: 183 VLFPYEAPTRTKQNPAERKVIEIGDGEELSI 213

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>PP220_ASFB7 (Q08358) Polyprotein pp220 (220 kDa polyprotein) [Contains: p34;|
           p14; p37; p150]
          Length = 2474

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
 Frame = +1

Query: 112 LSLDLKMFAAKSLGRAREAPAAAMDD--CIRRLEEEKSKIEV-FRRELPLCARLLADVID 282
           ++LDL +    +   ARE     +     ++ + EE+SKI+  F+     C+RLL  +ID
Sbjct: 440 IALDLSLIGFYTNAAAREERETFLTQFMLVKNVLEEQSKIDPNFKNLYDSCSRLL-QIID 498

Query: 283 VMKKEVEEKKRGGDRGENKEDAGA 354
                V++K  GG+  E     GA
Sbjct: 499 FYTDIVQKKYGGGEDCECTRVGGA 522

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>DEP1_YEAST (P31385) Protein DEP1|
          Length = 420

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +1

Query: 142 KSLGRAREAPAAAMDDCIRRL----EEEKSKIEVFRRELPLCARLLADVIDVMKKEVEEK 309
           +SL R  E    A+D+  +       E++SK E   +EL        + ID  +K  + +
Sbjct: 85  ESLKRPHEDEKEAIDEAKKMKVPGENEDESKEEEKSQELE-------EAIDSKEKSTDAR 137

Query: 310 KRGGDRGENKEDAGAGDKSN 369
              GD G+N+E+    D  N
Sbjct: 138 DEQGDEGDNEEENNEEDNEN 157

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>ZC11A_MOUSE (Q6NZF1) Zinc finger CCCH-type domain-containing protein 11A|
          Length = 792

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
 Frame = +1

Query: 91  EIGMGADLSLDLKMFAAKSLGRAREAPAAAMDDCIRRLEEEKS-KIEVFRRELPLCARLL 267
           ++ +G D    LK   A+ LG+  E+P   +D   ++    K+ +I V   E  L  R  
Sbjct: 287 KLSVGGDSDPPLKRSLAQRLGKKVESPETNIDKAPKKERGHKAGEIHVKTLEEILLERAS 346

Query: 268 ADVIDVMKKEVEEKKRGGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERR 447
               ++  K   E+  G D      D+ +G KS+  S+ ++ T   V  +    +Q+  R
Sbjct: 347 QKRGELQTKLKAEEPSGAD------DSPSGTKSS--SSVRIKTFSEVLAEKKHRQQEMER 398

Query: 448 RSSEPES 468
           + S+ ++
Sbjct: 399 QKSKKDT 405

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>Y096_MYCGE (P47342) Hypothetical protein MG096|
          Length = 650

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 25/95 (26%), Positives = 44/95 (46%)
 Frame = +1

Query: 154 RAREAPAAAMDDCIRRLEEEKSKIEVFRRELPLCARLLADVIDVMKKEVEEKKRGGDRGE 333
           + REA   A ++  RRLEEE+      +R+L    R  A+     K++ EE KR  ++  
Sbjct: 330 KEREAAKKAYEEEQRRLEEER------KRQLEELRRREAE----EKRKAEEAKRNQEKAR 379

Query: 334 NKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQD 438
            + +A     +++      W     +G D ++K D
Sbjct: 380 REREAYEKSFNSFKDFKFYWL---TKGKDVTKKAD 411

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>ARI4A_HUMAN (P29374) AT-rich interactive domain-containing protein 4A (ARID|
           domain-containing protein 4A) (Retinoblastoma-binding
           protein 1) (RBBP-1)
          Length = 1257

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 28/115 (24%), Positives = 51/115 (44%)
 Frame = +1

Query: 124 LKMFAAKSLGRAREAPAAAMDDCIRRLEEEKSKIEVFRRELPLCARLLADVIDVMKKEVE 303
           LK+     L   +  P   +D      E E+ +IE+   + P   R +A  ++ +KKE+E
Sbjct: 432 LKLDQEMPLTEVKSEPEENIDS---NSESEREEIEL---KSPRGRRRIARDVNSIKKEIE 485

Query: 304 EKKRGGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRRSSEPES 468
           E+K      +N  D    D  +   TA+    + + G   + KQ E++   + +S
Sbjct: 486 EEKTEDKLKDN--DTENKDVDDDYETAEKKENELLLGRKNTPKQKEKKIKKQEDS 538

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>FLNB_HUMAN (O75369) Filamin-B (FLN-B) (Beta-filamin) (Actin-binding-like|
            protein) (Thyroid autoantigen) (Truncated actin-binding
            protein) (Truncated ABP) (ABP-280 homolog) (ABP-278)
            (Filamin 3) (Filamin homolog 1) (Fh1)
          Length = 2602

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 49   PVRCKPNPMGLDVGEIGMGADLSLDLKMFAAKSLGRAREAPAAAMDDC 192
            P + K +  GL+ G +G  A+ ++D K      LG   E P  A  +C
Sbjct: 1040 PSKVKAHGPGLEGGLVGKPAEFTIDTKGAGTGGLGLTVEGPCEAKIEC 1087

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>EGFL7_HUMAN (Q9UHF1) EGF-like domain-containing protein 7 precursor (Multiple|
           EGF-like domain protein 7) (Multiple epidermal growth
           factor-like domain protein 7) (Vascular endothelial
           statin) (VE-statin) (NOTCH4-like protein) (ZNEU1)
          Length = 273

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 4   HTFSCNKSVKIPFGAPVRCKPNPMGLD 84
           H+ S + ++ +P G P R  PNP G+D
Sbjct: 167 HSLSADGTLCVPKGGPPRVAPNPTGVD 193

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>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor|
           YT521) (RA301-binding protein)
          Length = 738

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 295 EVEEKKRGGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRRSSEP 462
           E ++K+ G D     E + +G +S   +   + +G    G D  +K+ +R R   P
Sbjct: 257 ERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISP 312

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>RNR_UREPA (Q9PR88) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 721

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = +1

Query: 118 LDLKMFAAKSLGRAREAPAAAMDDCIRRLEEEK--SKIEVFRRELPLCARL--LADVIDV 285
           +D+K++  K+     E    A ++ +    EE     ++ F  E+P   R+     +I++
Sbjct: 434 IDIKIYERKTAQMMVEDFMIAANEAVTMFAEEHMDKTLKEFNLEMPFIYRVHDKPSIINL 493

Query: 286 MKKEVEEKKRGGDRGENKEDAGAGDKSNWM 375
            K E+E KK   +   + E+      SNW+
Sbjct: 494 QKFEIEAKKLSFNISHDFENIQPNTISNWL 523

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>PALA_MAGGR (Q51NJ3) pH-response regulator protein palA/RIM20|
          Length = 849

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 27/115 (23%), Positives = 50/115 (43%)
 Frame = +1

Query: 136  AAKSLGRAREAPAAAMDDCIRRLEEEKSKIEVFRRELPLCARLLADVIDVMKKEVEEKKR 315
            A K+ G+ REA    +D    + +E  S +EV R+     ++++    D  +  V E+++
Sbjct: 674  ADKAGGKEREAALQKLDSAFYKYKEIVSNVEVGRKFYNDLSKIVGTFRDTCRTWVAERRK 733

Query: 316  GGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRRSSEPESHDGA 480
                  + ED  +      +S  Q  T         S++Q ++ RS   E+H  A
Sbjct: 734  D---ARSLEDEISMPPLGSLSLQQ--TPSQQSSQYYSQQQQQQPRSPPQEAHHSA 783

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>YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative splicing factor|
           YT521)
          Length = 727

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 295 EVEEKKRGGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRRSSEP 462
           E ++K+ G D     E + +G +S   +   + +G    G D  +K+ +R R   P
Sbjct: 254 ERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISP 309

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>RRP3_YEAST (P38712) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-) (Ribosomal|
           RNA-processing protein RRP3)
          Length = 501

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 250 LCARLLADVIDVMKKEVEEKKRGGDRGENKEDAGAGDK 363
           L  ++ A  ++  KK +E +K GG   +++EDA A  K
Sbjct: 19  LAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKK 56

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>FAM9A_HUMAN (Q8IZU1) Protein FAM9A|
          Length = 332

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 28/110 (25%), Positives = 43/110 (39%)
 Frame = +1

Query: 136 AAKSLGRAREAPAAAMDDCIRRLEEEKSKIEVFRRELPLCARLLADVIDVMKKEVEEKKR 315
           AA     A EA AAA +  +   EEE+ K E   +E               ++E E ++ 
Sbjct: 199 AAAEAAAAAEAAAAAAEVIVVEDEEEEEKEEEEEKE---------------EEEEEGEEE 243

Query: 316 GGDRGENKEDAGAGDKSNWMSTAQLWTGDSVRGDDASEKQDERRRSSEPE 465
           GG  GE  E+ G G +                G++  E+++E     E E
Sbjct: 244 GG--GEEGEEGGGGGE----------------GEETEEEEEEEEEEEEEE 275

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>MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle|
            myosin heavy chain IIc) (NMHC II-C)
          Length = 1995

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +1

Query: 148  LGRAREAPAAAMDDCIRRLEEEKSKIEVFRRELPLCARLLADVIDVMKKEVEEKKRGGDR 327
            L R R      +DD    LE+++  +    ++     +LLA+    + + VEE++R    
Sbjct: 1435 LERGRRRLQQELDDATMDLEQQRQLVSTLEKKQRKFDQLLAEEKAAVLRAVEERERAEAE 1494

Query: 328  GENKE 342
            G  +E
Sbjct: 1495 GRERE 1499

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>LMNA_CHICK (P13648) Lamin-A|
          Length = 657

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +1

Query: 121 DLKMFAAKSLGRAREAPAAAMDDCIRRLEEEKSKIEVFRRELPLCARLLADVIDVMKKEV 300
           DL+   AK  G   EA     D+ +RR++ E ++++  + EL     + ++ +   K+  
Sbjct: 163 DLRAQVAKLEGALSEAKKQLQDEMLRRVDAE-NRLQTLKEELEFQKNIYSEELRETKRRH 221

Query: 301 EEKKRGGDRGENKE 342
           E +    D G  +E
Sbjct: 222 ETRLVEIDNGRQQE 235

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>HS90A_CHICK (P11501) Heat shock protein HSP 90-alpha|
          Length = 728

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 22/79 (27%), Positives = 31/79 (39%)
 Frame = +1

Query: 160 REAPAAAMDDCIRRLEEEKSKIEVFRRELPLCARLLADVIDVMKKEVEEKKRGGDRGENK 339
           +E      DD     EEEK + E    + P       ++ DV   E EEKK G  + + K
Sbjct: 223 KERDKEVSDDEAEEKEEEKEEKEEKTEDKP-------EIEDVGSDEEEEKKDGDKKKKKK 275

Query: 340 EDAGAGDKSNWMSTAQLWT 396
                 D+     T  +WT
Sbjct: 276 IKEKYIDEEELNKTKPIWT 294

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>PEN3_ADE02 (P03276) Penton protein (Virion component III) (Penton base|
           protein) (pIII)
          Length = 571

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +1

Query: 256 ARLLADVIDVMKKEVEEKKRGGDRGENKEDAGAGDKSNWMSTAQLWTGD----SVRGDDA 423
           A L  D      K+  E+   G  G N   +GA + SN  + A     D    ++RGD  
Sbjct: 285 ALLDVDAYQASLKDDTEQGGDGAGGGNNSGSGAEENSNAAAAAMQPVEDMNDHAIRGDTF 344

Query: 424 SEKQDERRRSSEPESHDGA 480
           + + +E+R  +E  +   A
Sbjct: 345 ATRAEEKRAEAEAAAEAAA 363

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>CYLC2_BOVIN (Q28092) Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)|
          Length = 488

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 289 KKEVEEKKRGGDRGENKEDAGAGDKSNWMSTA---QLWTGDSVRGDDASEKQDERRRSSE 459
           KK+ ++ K+G  +G+       G+K +        +  T    +GD++ +K+D +++ S+
Sbjct: 381 KKDDKKDKKGSKKGKESATESEGEKKDSKKDKAGKKDPTKAGEKGDESKDKKDAKKKDSK 440

Query: 460 PESHD 474
            E  D
Sbjct: 441 KEKKD 445


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,498,417
Number of Sequences: 219361
Number of extensions: 1090043
Number of successful extensions: 4860
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 4476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4824
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result