ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdk14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056E18, full insert sequence Length = 1030 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 315 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgctggattcgca 374 |||||||| || |||||||||| ||||||||| ||||||||||||||||| |||||| Sbjct: 370 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgcgggattcaag 429 Query: 375 aacgtgaagaacctcgaaggcggctacctctccttgctc 413 ||||||| || ||| |||||||||||||||||||||||| Sbjct: 430 aacgtgaggatccttgaaggcggctacctctccttgctc 468 Score = 105 bits (53), Expect = 2e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 99 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 158 |||||||||||||||| ||||||||| |||||| || || | | || ||| ||||| Sbjct: 154 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctggac 213 Query: 159 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 218 ||| |||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 214 gtgaggatgtgggaggactttgacaagggccacgtcgccggcgcccgcaacgtgccctac 273 Query: 219 tacctctccgtcacgcc 235 ||||||||||| ||||| Sbjct: 274 tacctctccgtgacgcc 290
>dbj|AK063419.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-C02, full insert sequence Length = 1413 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 315 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgctggattcgca 374 |||||||| || |||||||||| ||||||||| ||||||||||||||||| |||||| Sbjct: 370 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgcgggattcaag 429 Query: 375 aacgtgaagaacctcgaaggcggctacctctccttgctc 413 ||||||| || ||| |||||||||||||||||||||||| Sbjct: 430 aacgtgaggatccttgaaggcggctacctctccttgctc 468 Score = 105 bits (53), Expect = 2e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 99 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 158 |||||||||||||||| ||||||||| |||||| || || | | || ||| ||||| Sbjct: 154 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctggac 213 Query: 159 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 218 ||| |||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 214 gtgaggatgtgggaggactttgacaagggccacgtcgccggcgcccgcaacgtgccctac 273 Query: 219 tacctctccgtcacgcc 235 ||||||||||| ||||| Sbjct: 274 tacctctccgtgacgcc 290
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 105 bits (53), Expect = 2e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 99 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 158 |||||||||||||||| ||||||||| |||||| || || | | || ||| ||||| Sbjct: 13701575 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctggac 13701634 Query: 159 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 218 ||| |||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 13701635 gtgaggatgtgggaggactttgacaagggccacgtcgccggcgcccgcaacgtgccctac 13701694 Query: 219 tacctctccgtcacgcc 235 ||||||||||| ||||| Sbjct: 13701695 tacctctccgtgacgcc 13701711 Score = 67.9 bits (34), Expect = 5e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 315 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgc 364 |||||||| || |||||||||| ||||||||| ||||||||||||||||| Sbjct: 13701931 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgc 13701980 Score = 54.0 bits (27), Expect = 7e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 375 aacgtgaagaacctcgaaggcggctacctctccttgctc 413 ||||||| || ||| |||||||||||||||||||||||| Sbjct: 13702074 aacgtgaggatccttgaaggcggctacctctccttgctc 13702112
>emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa0042B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145118 Score = 105 bits (53), Expect = 2e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 99 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 158 |||||||||||||||| ||||||||| |||||| || || | | || ||| ||||| Sbjct: 35176 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctggac 35235 Query: 159 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 218 ||| |||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 35236 gtgaggatgtgggaggactttgacaagggccacgtcgccggcgcccgcaacgtgccctac 35295 Query: 219 tacctctccgtcacgcc 235 ||||||||||| ||||| Sbjct: 35296 tacctctccgtgacgcc 35312 Score = 67.9 bits (34), Expect = 5e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 315 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgc 364 |||||||| || |||||||||| ||||||||| ||||||||||||||||| Sbjct: 35532 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgc 35581 Score = 54.0 bits (27), Expect = 7e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 375 aacgtgaagaacctcgaaggcggctacctctccttgctc 413 ||||||| || ||| |||||||||||||||||||||||| Sbjct: 35675 aacgtgaggatccttgaaggcggctacctctccttgctc 35713
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 105 bits (53), Expect = 2e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 99 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 158 |||||||||||||||| ||||||||| |||||| || || | | || ||| ||||| Sbjct: 13655849 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctggac 13655908 Query: 159 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 218 ||| |||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 13655909 gtgaggatgtgggaggactttgacaagggccacgtcgccggcgcccgcaacgtgccctac 13655968 Query: 219 tacctctccgtcacgcc 235 ||||||||||| ||||| Sbjct: 13655969 tacctctccgtgacgcc 13655985 Score = 67.9 bits (34), Expect = 5e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 315 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgc 364 |||||||| || |||||||||| ||||||||| ||||||||||||||||| Sbjct: 13656205 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgc 13656254 Score = 54.0 bits (27), Expect = 7e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 375 aacgtgaagaacctcgaaggcggctacctctccttgctc 413 ||||||| || ||| |||||||||||||||||||||||| Sbjct: 13656348 aacgtgaggatccttgaaggcggctacctctccttgctc 13656386
>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155451 Score = 105 bits (53), Expect = 2e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 99 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 158 |||||||||||||||| ||||||||| |||||| || || | | || ||| ||||| Sbjct: 17228 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctggac 17287 Query: 159 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 218 ||| |||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 17288 gtgaggatgtgggaggactttgacaagggccacgtcgccggcgcccgcaacgtgccctac 17347 Query: 219 tacctctccgtcacgcc 235 ||||||||||| ||||| Sbjct: 17348 tacctctccgtgacgcc 17364 Score = 67.9 bits (34), Expect = 5e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 315 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgc 364 |||||||| || |||||||||| ||||||||| ||||||||||||||||| Sbjct: 17584 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgc 17633 Score = 54.0 bits (27), Expect = 7e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 375 aacgtgaagaacctcgaaggcggctacctctccttgctc 413 ||||||| || ||| |||||||||||||||||||||||| Sbjct: 17727 aacgtgaggatccttgaaggcggctacctctccttgctc 17765
>gb|AY107459.1| Zea mays PCO099192 mRNA sequence Length = 709 Score = 67.9 bits (34), Expect = 5e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 163 ggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctactacc 222 ||||||||||||| || || ||||| || || |||||||| || || || |||||||||| Sbjct: 91 ggatgtgggaggattttgacaagggccatgtcgccggtgctcggaatgttccctactacc 150 Query: 223 tctccgtcacgccccatggcaaggag 248 |||||||||| || ||||| |||||| Sbjct: 151 tctccgtcactccgcatgggaaggag 176 Score = 61.9 bits (31), Expect = 3e-06 Identities = 82/99 (82%) Strand = Plus / Plus Query: 315 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgctggattcgca 374 ||||||||||| ||||||||| |||||||| |||||||| ||| ||| || ||| | Sbjct: 243 tgccgctctggcatccggtccaaactcgccactgcagacctcgtcaacgcgggcttcacc 302 Query: 375 aacgtgaagaacctcgaaggcggctacctctccttgctc 413 ||||||| |||||| ||||||| ||||| ||||||||| Sbjct: 303 aacgtgaggaacctacaaggcggatacctttccttgctc 341
>gb|AF203649.1| Myotis myotis microsatellite D9 sequence Length = 468 Score = 44.1 bits (22), Expect = 0.67 Identities = 25/26 (96%) Strand = Plus / Plus Query: 30 ctttcctccccggtgctcaatcctcc 55 ||||||||||| |||||||||||||| Sbjct: 229 ctttcctcccctgtgctcaatcctcc 254
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 gcgtggacgcggaggcggcgt 120 ||||||||||||||||||||| Sbjct: 279208 gcgtggacgcggaggcggcgt 279188
>gb|U19858.1|SAU19858 Streptomyces antibioticus guanosine pentaphosphate synthetase (gpsI) gene, complete cds Length = 2838 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 gcgtggacgcggaggcggcgt 120 ||||||||||||||||||||| Sbjct: 866 gcgtggacgcggaggcggcgt 846 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,792,886 Number of Sequences: 3902068 Number of extensions: 4792886 Number of successful extensions: 85597 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85493 Number of HSP's gapped (non-prelim): 104 length of query: 766 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 743 effective length of database: 17,143,297,704 effective search space: 12737470194072 effective search space used: 12737470194072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
