ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdm07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191407.1| Oryza sativa (japonica cultivar-group), predic... 323 4e-85
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 323 4e-85
3dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 323 4e-85
4dbj|AK065563.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 4e-85
5gb|DQ177286.1| Danio rerio Slit1a (slit1a) mRNA, complete cds 46 0.12
6ref|NM_001034968.1| Danio rerio slit homolog 1a (Drosophila) (sl... 46 0.12
7gb|AC144478.20| Medicago truncatula clone mth2-20b20, complete s... 44 0.49
8gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 44 0.49
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
10dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
11gb|AF525919.1| Chlamydomonas reinhardtii molecular marker GP123 42 1.9
12dbj|AP003537.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
13emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 1.9
14gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, c... 40 7.7
15gb|AE010324.1| Methanopyrus kandleri AV19 section 23 of 157 of t... 40 7.7
16gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 7.7
17gb|AC118288.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
18gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 7.7
19ref|XM_974609.1| PREDICTED: Mus musculus hypothetical protein LO... 40 7.7
20ref|XM_974215.1| PREDICTED: Mus musculus hypothetical protein LO... 40 7.7
21emb|CR384062.10| Zebrafish DNA sequence from clone DKEY-208K22 i... 40 7.7
22gb|AC122242.2| Mus musculus BAC clone RP23-147P2 from chromosome... 40 7.7
23gb|AC024608.4| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 7.7
24ref|XM_739910.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 7.7
25gb|AC123714.6| Mus musculus chromosome 9, clone RP23-393E20, com... 40 7.7
26gb|AC159819.2| Mus musculus BAC clone RP23-180C14 from chromosom... 40 7.7
27emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.7
28gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 gen... 40 7.7
29dbj|AK135093.1| Mus musculus adult male olfactory brain cDNA, RI... 40 7.7
30dbj|AK172478.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 7.7
31dbj|AK035628.1| Mus musculus adult male urinary bladder cDNA, RI... 40 7.7
32dbj|AK021149.1| Mus musculus adult male corpus striatum cDNA, RI... 40 7.7
33dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
35dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
36gb|AC087528.15| Homo sapiens chromosome 15, clone RP11-497M17, c... 40 7.7
37gb|AC090164.22| Homo sapiens chromosome 15, clone RP11-14C10, co... 40 7.7
38dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.7
39dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
40gb|AC161198.5| Mus musculus chromosome 15, clone RP23-34E23, com... 40 7.7
41gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
42emb|CT010470.9| Mouse DNA sequence from clone RP23-313D12 on chr... 40 7.7 
>ref|NM_191407.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1566

 Score =  323 bits (163), Expect = 4e-85
 Identities = 259/291 (89%)
 Strand = Plus / Plus

                                                                       
Query: 219 cagaacgcggaggtgcacgatcaggtgcgtcaaggatgagtctatccattttgatccgtc 278
           ||||||||| ||  ||| ||||||| |||||||||| || ||  ||||||||||||| ||
Sbjct: 108 cagaacgcgaagaggcaggatcaggagcgtcaaggacgactcgctccattttgatccatc 167

                                                                       
Query: 279 gaagattgaagcgccgccgtactccagttacttcgactccacgtctggtcagctcgagcc 338
            ||||| || ||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 168 taagatcgaggcgccaccgtactccagttacttcgactccacgtcgggccagctcgagcc 227

                                                                       
Query: 339 ggcgtcaggcgcccgggcaagcatacctgggcaggagtactggccggagggcactgcagc 398
           |||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 228 ggcgtcgggtgctcgggcaagcatacctgggcaggagtactggccggagggcactgcatc 287

                                                                       
Query: 399 ccgcgcccgtgctgcccgtgcacctgcaccggtcggggagtcggccgggactccgtctct 458
           |||||  || ||||||||||||||||||||||||||||| || || ||||| |||||  |
Sbjct: 288 ccgcgtacgcgctgcccgtgcacctgcaccggtcggggaatcagctgggacaccgtcgtt 347

                                                              
Query: 459 tggcaagaaacccgggagtaggaggaaagggtacaaggagcaggtagcatc 509
           ||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 348 tggtaagaagcccgggagtagaaggaaagggtacaaggagcaggtagcatc 398
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  323 bits (163), Expect = 4e-85
 Identities = 259/291 (89%)
 Strand = Plus / Plus

                                                                            
Query: 219      cagaacgcggaggtgcacgatcaggtgcgtcaaggatgagtctatccattttgatccgtc 278
                ||||||||| ||  ||| ||||||| |||||||||| || ||  ||||||||||||| ||
Sbjct: 32464013 cagaacgcgaagaggcaggatcaggagcgtcaaggacgactcgctccattttgatccatc 32464072

                                                                            
Query: 279      gaagattgaagcgccgccgtactccagttacttcgactccacgtctggtcagctcgagcc 338
                 ||||| || ||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 32464073 taagatcgaggcgccaccgtactccagttacttcgactccacgtcgggccagctcgagcc 32464132

                                                                            
Query: 339      ggcgtcaggcgcccgggcaagcatacctgggcaggagtactggccggagggcactgcagc 398
                |||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 32464133 ggcgtcgggtgctcgggcaagcatacctgggcaggagtactggccggagggcactgcatc 32464192

                                                                            
Query: 399      ccgcgcccgtgctgcccgtgcacctgcaccggtcggggagtcggccgggactccgtctct 458
                |||||  || ||||||||||||||||||||||||||||| || || ||||| |||||  |
Sbjct: 32464193 ccgcgtacgcgctgcccgtgcacctgcaccggtcggggaatcagctgggacaccgtcgtt 32464252

                                                                   
Query: 459      tggcaagaaacccgggagtaggaggaaagggtacaaggagcaggtagcatc 509
                ||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 32464253 tggtaagaagcccgggagtagaaggaaagggtacaaggagcaggtagcatc 32464303



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 116      cgccggctgcctccaccgccgcgcc 140
                |||| ||||||||||||||||||||
Sbjct: 12869673 cgcccgctgcctccaccgccgcgcc 12869697
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>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score =  323 bits (163), Expect = 4e-85
 Identities = 259/291 (89%)
 Strand = Plus / Plus

                                                                         
Query: 219   cagaacgcggaggtgcacgatcaggtgcgtcaaggatgagtctatccattttgatccgtc 278
             ||||||||| ||  ||| ||||||| |||||||||| || ||  ||||||||||||| ||
Sbjct: 51534 cagaacgcgaagaggcaggatcaggagcgtcaaggacgactcgctccattttgatccatc 51593

                                                                         
Query: 279   gaagattgaagcgccgccgtactccagttacttcgactccacgtctggtcagctcgagcc 338
              ||||| || ||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 51594 taagatcgaggcgccaccgtactccagttacttcgactccacgtcgggccagctcgagcc 51653

                                                                         
Query: 339   ggcgtcaggcgcccgggcaagcatacctgggcaggagtactggccggagggcactgcagc 398
             |||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 51654 ggcgtcgggtgctcgggcaagcatacctgggcaggagtactggccggagggcactgcatc 51713

                                                                         
Query: 399   ccgcgcccgtgctgcccgtgcacctgcaccggtcggggagtcggccgggactccgtctct 458
             |||||  || ||||||||||||||||||||||||||||| || || ||||| |||||  |
Sbjct: 51714 ccgcgtacgcgctgcccgtgcacctgcaccggtcggggaatcagctgggacaccgtcgtt 51773

                                                                
Query: 459   tggcaagaaacccgggagtaggaggaaagggtacaaggagcaggtagcatc 509
             ||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 51774 tggtaagaagcccgggagtagaaggaaagggtacaaggagcaggtagcatc 51824
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>dbj|AK065563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034F04, full
           insert sequence
          Length = 2858

 Score =  323 bits (163), Expect = 4e-85
 Identities = 259/291 (89%)
 Strand = Plus / Plus

                                                                       
Query: 219 cagaacgcggaggtgcacgatcaggtgcgtcaaggatgagtctatccattttgatccgtc 278
           ||||||||| ||  ||| ||||||| |||||||||| || ||  ||||||||||||| ||
Sbjct: 280 cagaacgcgaagaggcaggatcaggagcgtcaaggacgactcgctccattttgatccatc 339

                                                                       
Query: 279 gaagattgaagcgccgccgtactccagttacttcgactccacgtctggtcagctcgagcc 338
            ||||| || ||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 340 taagatcgaggcgccaccgtactccagttacttcgactccacgtcgggccagctcgagcc 399

                                                                       
Query: 339 ggcgtcaggcgcccgggcaagcatacctgggcaggagtactggccggagggcactgcagc 398
           |||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 400 ggcgtcgggtgctcgggcaagcatacctgggcaggagtactggccggagggcactgcatc 459

                                                                       
Query: 399 ccgcgcccgtgctgcccgtgcacctgcaccggtcggggagtcggccgggactccgtctct 458
           |||||  || ||||||||||||||||||||||||||||| || || ||||| |||||  |
Sbjct: 460 ccgcgtacgcgctgcccgtgcacctgcaccggtcggggaatcagctgggacaccgtcgtt 519

                                                              
Query: 459 tggcaagaaacccgggagtaggaggaaagggtacaaggagcaggtagcatc 509
           ||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 520 tggtaagaagcccgggagtagaaggaaagggtacaaggagcaggtagcatc 570



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 68  ccatggcgtcttgctcccacccttggctcttcccaggcatg 108
           |||||||||| ||||||| | |||||||| |||||||||||
Sbjct: 135 ccatggcgtcgtgctcccgcacttggctcctcccaggcatg 175
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>gb|DQ177286.1| Danio rerio Slit1a (slit1a) mRNA, complete cds
          Length = 6037

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 147  gagattctgcaagtcctcgaaggtgtttgct 177
            ||||||||||| ||||| |||||||||||||
Sbjct: 1343 gagattctgcaggtcctggaaggtgtttgct 1313
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>ref|NM_001034968.1| Danio rerio slit homolog 1a (Drosophila) (slit1a), mRNA
          Length = 6037

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 147  gagattctgcaagtcctcgaaggtgtttgct 177
            ||||||||||| ||||| |||||||||||||
Sbjct: 1343 gagattctgcaggtcctggaaggtgtttgct 1313
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>gb|AC144478.20| Medicago truncatula clone mth2-20b20, complete sequence
          Length = 144248

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 304   agttacttcgactccacgtctggtcagctcgagccggc 341
             |||||| | |||||||| ||||||||||| ||||||||
Sbjct: 21599 agttacatggactccacctctggtcagcttgagccggc 21636
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 116    cgccggctgcctccaccgccgcgccg 141
              ||||||| ||||||||||||||||||
Sbjct: 460207 cgccggccgcctccaccgccgcgccg 460232



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 107     tgtcgacgccgccggctgcctccaccgc 134
               |||||||| ||||||| |||||||||||
Sbjct: 5079953 tgtcgacgtcgccggcggcctccaccgc 5079980
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 116      cgccggctgcctccaccgccgcgccg 141
                |||| |||||||||||||||||||||
Sbjct: 22505777 cgcccgctgcctccaccgccgcgccg 22505802
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>dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0493A04
          Length = 149367

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 116    cgccggctgcctccaccgccgcgccg 141
              |||| |||||||||||||||||||||
Sbjct: 100705 cgcccgctgcctccaccgccgcgccg 100730
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>gb|AF525919.1| Chlamydomonas reinhardtii molecular marker GP123
          Length = 760

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 117 gccggctgcctccaccgccgc 137
           |||||||||||||||||||||
Sbjct: 602 gccggctgcctccaccgccgc 582
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>dbj|AP003537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1140D12
          Length = 139301

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 116   cgccggctgcctccaccgccgcgcc 140
             |||| ||||||||||||||||||||
Sbjct: 21114 cgcccgctgcctccaccgccgcgcc 21138
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 117     gccggctgcctccaccgccgc 137
               |||||||||||||||||||||
Sbjct: 1467057 gccggctgcctccaccgccgc 1467037
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>gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, complete sequence
          Length = 205272

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     cttcttccccctcctcgatt 24
             ||||||||||||||||||||
Sbjct: 13720 cttcttccccctcctcgatt 13739
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>gb|AE010324.1| Methanopyrus kandleri AV19 section 23 of 157 of the complete genome
          Length = 10264

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 14   cctcctcgattccgaaccccgcgg 37
            |||||||| |||||||||||||||
Sbjct: 3256 cctcctcggttccgaaccccgcgg 3233
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    cgcgcccgtgctgcccgtgc 419
              ||||||||||||||||||||
Sbjct: 359212 cgcgcccgtgctgcccgtgc 359193
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>gb|AC118288.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0077L08, complete sequence
          Length = 115640

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   tcgacgccgccggctgcctc 128
             ||||||||||||||||||||
Sbjct: 51748 tcgacgccgccggctgcctc 51767
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 400     cgcgcccgtgctgcccgtgc 419
               ||||||||||||||||||||
Sbjct: 1089844 cgcgcccgtgctgcccgtgc 1089825
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>ref|XM_974609.1| PREDICTED: Mus musculus hypothetical protein LOC669357 (LOC669357),
            mRNA
          Length = 1639

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 387  gggcactgcagcccgcgccc 406
            ||||||||||||||||||||
Sbjct: 1084 gggcactgcagcccgcgccc 1103
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>ref|XM_974215.1| PREDICTED: Mus musculus hypothetical protein LOC665058 (LOC665058),
            mRNA
          Length = 1639

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 387  gggcactgcagcccgcgccc 406
            ||||||||||||||||||||
Sbjct: 1084 gggcactgcagcccgcgccc 1103
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>emb|CR384062.10| Zebrafish DNA sequence from clone DKEY-208K22 in linkage group 2,
             complete sequence
          Length = 78000

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   aggtgtttgctagtttgcgt 186
             ||||||||||||||||||||
Sbjct: 41356 aggtgtttgctagtttgcgt 41337
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>gb|AC122242.2| Mus musculus BAC clone RP23-147P2 from chromosome 13, complete sequence
          Length = 208096

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    cccacccttggctcttccca 102
             ||||||||||||||||||||
Sbjct: 25000 cccacccttggctcttccca 24981
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>gb|AC024608.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-333I24, complete
              sequence
          Length = 215829

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     tggctcttcccaggcatgtc 110
              ||||||||||||||||||||
Sbjct: 159865 tggctcttcccaggcatgtc 159884
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>ref|XM_739910.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000794.04.0)
          partial mRNA
          Length = 1176

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 5  cttcttccccctcctcgatt 24
          ||||||||||||||||||||
Sbjct: 28 cttcttccccctcctcgatt 9
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>gb|AC123714.6| Mus musculus chromosome 9, clone RP23-393E20, complete sequence
          Length = 217860

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    gggcactgcagcccgcgccc 406
              ||||||||||||||||||||
Sbjct: 132538 gggcactgcagcccgcgccc 132557
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>gb|AC159819.2| Mus musculus BAC clone RP23-180C14 from chromosome 9, complete sequence
          Length = 211119

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   gggcactgcagcccgcgccc 406
             ||||||||||||||||||||
Sbjct: 36659 gggcactgcagcccgcgccc 36678
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    cgcgcccgtgctgcccgtgc 419
              ||||||||||||||||||||
Sbjct: 970826 cgcgcccgtgctgcccgtgc 970807
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>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete
             sequence
          Length = 151991

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 534   gaccagtggagatgacggcg 553
             ||||||||||||||||||||
Sbjct: 36062 gaccagtggagatgacggcg 36043
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>dbj|AK135093.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
           enriched library, clone:6430584I17 product:Potassium
           channel KCNH3 (Fragment) homolog [Mus musculus], full
           insert sequence
          Length = 3226

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   cttcttccccctcctcgatt 24
           ||||||||||||||||||||
Sbjct: 670 cttcttccccctcctcgatt 689
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>dbj|AK172478.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830209K05 product:hypothetical protein,
           full insert sequence
          Length = 1356

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 387 gggcactgcagcccgcgccc 406
           ||||||||||||||||||||
Sbjct: 283 gggcactgcagcccgcgccc 264
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>dbj|AK035628.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
           enriched library, clone:9530078K20
           product:unclassifiable, full insert sequence
          Length = 1332

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 387 gggcactgcagcccgcgccc 406
           ||||||||||||||||||||
Sbjct: 263 gggcactgcagcccgcgccc 244
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>dbj|AK021149.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length
          enriched library, clone:C030044P22
          product:unclassifiable, full insert sequence
          Length = 1080

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 5  cttcttccccctcctcgatt 24
          ||||||||||||||||||||
Sbjct: 62 cttcttccccctcctcgatt 81
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 534      gaccagtggagatgacggcg 553
                ||||||||||||||||||||
Sbjct: 19042602 gaccagtggagatgacggcg 19042621
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 110      cgacgccgccggctgcctcc 129
                ||||||||||||||||||||
Sbjct: 24346061 cgacgccgccggctgcctcc 24346042
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 109     tcgacgccgccggctgcctc 128
               ||||||||||||||||||||
Sbjct: 1872974 tcgacgccgccggctgcctc 1872993
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>gb|AC087528.15| Homo sapiens chromosome 15, clone RP11-497M17, complete sequence
          Length = 142965

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 481   aggaaagggtacaaggagcaggtagcat 508
             |||||||| |||||||||||||| ||||
Sbjct: 15233 aggaaaggctacaaggagcaggtggcat 15260
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>gb|AC090164.22| Homo sapiens chromosome 15, clone RP11-14C10, complete sequence
          Length = 204674

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 481  aggaaagggtacaaggagcaggtagcat 508
            |||||||| |||||||||||||| ||||
Sbjct: 4323 aggaaaggctacaaggagcaggtggcat 4296
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 121     gctgcctccaccgccgcgcc 140
               ||||||||||||||||||||
Sbjct: 1178062 gctgcctccaccgccgcgcc 1178081



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    ccggcgtcaggcgcccgggc 356
              ||||||||||||||||||||
Sbjct: 292777 ccggcgtcaggcgcccgggc 292796
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>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1579_C03
          Length = 122851

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   cgacgccgccggctgcctcc 129
             ||||||||||||||||||||
Sbjct: 79254 cgacgccgccggctgcctcc 79235
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>gb|AC161198.5| Mus musculus chromosome 15, clone RP23-34E23, complete sequence
          Length = 237801

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      cttcttccccctcctcgatt 24
              ||||||||||||||||||||
Sbjct: 152388 cttcttccccctcctcgatt 152407
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 534      gaccagtggagatgacggcg 553
                ||||||||||||||||||||
Sbjct: 19053856 gaccagtggagatgacggcg 19053875
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>emb|CT010470.9| Mouse DNA sequence from clone RP23-313D12 on chromosome 13, complete
             sequence
          Length = 199355

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    cccacccttggctcttccca 102
             ||||||||||||||||||||
Sbjct: 31949 cccacccttggctcttccca 31968


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,608,301
Number of Sequences: 3902068
Number of extensions: 3608301
Number of successful extensions: 66975
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66061
Number of HSP's gapped (non-prelim): 914
length of query: 566
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 543
effective length of database: 17,143,297,704
effective search space: 9308810653272
effective search space used: 9308810653272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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