>PDM1_DROME (P31368) Protein nubbin (Protein twain) (POU domain protein 1)|
           (PDM-1) (dPOU-19) (dOCT1)
          Length = 601

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 442 PTPRPVQVHGQHGRGLQCPPASTPAQVCLPGRLTPA 335
           P   P Q+H  H   LQ  P S+ A + L G LTP+
Sbjct: 351 PASSPQQLHHHHHHPLQITPPSSAASLKLSGMLTPS 386

>RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembrane protein 7)|
          Length = 474

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 196 KAGSVAPTRTRRCTIRCVKDESIHFDPSKIEAPPYSSYFDSTSGQLEPAS 345
           +A  VA   TR  T + +    ++  P+    PP SSY   TS  + P S
Sbjct: 338 RAADVAKENTRSKTPKALLSSPLYVPPTSSYVPPTSSYVPPTSSYVPPTS 387

>CO7_PIG (Q9TUQ3) Complement component C7 precursor|
          Length = 843

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -2

Query: 502 PAPCTLSSYSRVS----CQETESRPTPRPVQVHGQHGRGLQCPPASTPAQVCLPGRLTP 338
           P  C   SY+  S    C +T++R   RPV V+GQ+G G  C  ++   Q C P R  P
Sbjct: 25  PVNCQWDSYAPWSECNGCTKTQTRR--RPVAVYGQYG-GHPCVGSTFETQSCEPTRGCP 80

>T240L_HUMAN (Q71F56) Thyroid hormone receptor-associated protein 2 (Thyroid|
           hormone receptor-associated protein complex 240 kDa
           component-like)
          Length = 2210

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -2

Query: 556 TRRHLHWSPHRPPLMPMLPAPCTLSSYSRVSCQETESRPTPRPVQVHGQHGRGLQCPPAS 377
           T + ++ +P   P  P+ P P TLS   R   QETES   P        +G GL+    S
Sbjct: 536 TSKQMNLNPMDSPHSPISPLPPTLSPQPR--GQETESLDPPSVPVNPALYGNGLELQQLS 593

Query: 376 T-PAQVCLPGRLTPARAD 326
           T   +  L G+  P  A+
Sbjct: 594 TLDDRTVLVGQRLPLMAE 611

>KRUP_DROME (P07247) Protein krueppel|
          Length = 502

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 211 APTRTRRCTIRCVKDESIHFDPSKIEAPPYSSYFDSTS-GQLEPASG 348
           A TRT    +  +K E +H D S   +PP S+   +TS   + PA G
Sbjct: 9   AQTRTLAAALAGIKQEDVHLDRSMSLSPPMSANTSATSAAAIYPAMG 55

>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic|
           serine protease) (Membrane-type mosaic serine protease)
          Length = 543

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 394 QCPPASTPAQVCLPGRLTPARADQTWSRSNWSTAALQSST 275
           Q  PA  P     P R +PARA  + S S  S++A  +ST
Sbjct: 49  QASPARAPPPQASPARASPARAPPSRSSSGRSSSARSAST 88

>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)|
          Length = 1287

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
 Frame = -2

Query: 538  WSPHRPPLMPMLPAPCTLSSYSRVSCQETESRPTPRPVQVHGQ---HGRGLQCP------ 386
            W P  PP +P   +  +L    R     T  R    P QV  Q    G G   P      
Sbjct: 962  WVPGPPPYLPRQQSDGSLLRSQRP--MGTSRRGLRGPAQVSAQLRAGGGGRDAPEAAAQS 1019

Query: 385  PASTPAQVCLPGRLTPA 335
            P S P+QV  PG  +PA
Sbjct: 1020 PCSVPSQVPTPGFFSPA 1036

>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)|
          Length = 428

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 20/71 (28%), Positives = 26/71 (36%)
 Frame = -2

Query: 541 HWSPHRPPLMPMLPAPCTLSSYSRVSCQETESRPTPRPVQVHGQHGRGLQCPPASTPAQV 362
           H   H PP  P  P P  +  + +        +P P P   H       Q  P S P Q 
Sbjct: 157 HHHHHHPPQPPPPPPPHMVPYFHQ--------QPAPAPQPPHLPSQPAQQPQPQSQPPQT 208

Query: 361 CLPGRLTPARA 329
             PG++  A A
Sbjct: 209 SHPGKMQEAAA 219

>SUZ12_DROME (Q9NJG9) Polycomb protein Su(z)12 (Suppressor 12 of zeste protein)|
          Length = 900

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
 Frame = +2

Query: 317 PRLVSSSRRQAP--------GQAYLGRSTGRRALQPAPVLPVHLHRSGSRPGLRLLARNP 472
           P+ + S ++ AP          +  G  +G  ++QP   +P HL R  +       A +P
Sbjct: 682 PKTLKSPQKPAPPADQASTSSASTSGSGSGSSSMQPPKRMPAHLKRGSA-------ASSP 734

Query: 473 GVGGKGT 493
           GV  KGT
Sbjct: 735 GVQSKGT 741

>MTR1L_SHEEP (Q28558) Melatonin-related receptor (G protein-coupled receptor 50)|
           (H9)
          Length = 575

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +1

Query: 178 SLRQRRKAGSVAPT----RTRRCTIRCVKDESIHFDPSKIEAPPYSSYFDSTSGQLEPAS 345
           S+  RRK+ S  P     +++  T+   K  S+HF PS +     S YF  +S   +P +
Sbjct: 395 SVSARRKSASAHPKSASGQSKSATVY-PKPTSVHFKPSSVYFKADSVYFKPSSSHPKPIT 453

Query: 346 G-ARASIPGQEYWPEGT 393
           G ++ +I     +P+ T
Sbjct: 454 GPSKTAISPATSFPKPT 470

>GL31_ARATH (P94040) Germin-like protein subfamily 3 member 1 precursor|
           (AtGER1) (At-GERM1) (AtGLP1)
          Length = 208

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 344 QAPGQAYLGRSTGRRALQPAPVLPVHLHRSGS 439
           Q PG   LG ST R  L P  V+P+H H   S
Sbjct: 75  QFPGLNGLGLSTARLDLAPKGVIPMHTHPGAS 106

>TAB2_BRARE (Q5RFW2) Mitogen-activated protein kinase kinase kinase|
           7-interacting protein 2 homolog
          Length = 711

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 33/131 (25%), Positives = 48/131 (36%)
 Frame = -2

Query: 529 HRPPLMPMLPAPCTLSSYSRVSCQETESRPTPRPVQVHGQHGRGLQCPPASTPAQVCLPG 350
           H PP  P    P T      V+      R TP  + +HG    GL  P +        P 
Sbjct: 155 HAPPQAPRFN-PIT------VTLAPNTGRNTPTSLHIHGGPQSGLNSPNSI----YIRPY 203

Query: 349 RLTPARADQTWSRSNWSTAALQSSTDQNG*THP*RT*SCTSAFWSARLTLPFSADAN*QT 170
              P    Q   R+ +S  + Q +      THP    S  S   ++ + +P S+  N Q 
Sbjct: 204 VTQPGSTRQVQCRAQYSPTS-QPAQQIYQITHPAAPQSSWSQHQTSHVYMPISSPTNTQA 262

Query: 169 PSRTCRISEPA 137
           PS    ++  A
Sbjct: 263 PSIPSAVASQA 273

>FTSKL_DEIRA (Q9RXB5) Hypothetical ftsK-like protein DR0400|
          Length = 980

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
 Frame = -2

Query: 511 PMLPAPCTLSSYSRVSCQETESRPTPRPVQVHGQHGRGLQCPPASTPAQVCLP------G 350
           P  PAP   S    V      +RPTPRPV   G     +   PAS       P      G
Sbjct: 425 PATPAPAAASVPQMVPTPRAAARPTPRPVSSPGP--SPVPVSPASASVSHAAPWEEPAAG 482

Query: 349 RLTPARADQTWSRSNWSTAALQS 281
           R  PA A    SR   +  AL S
Sbjct: 483 R--PAPAPSGVSRRGATRLALPS 503

>FXL16_RAT (Q5MJ12) F-box/LRR-repeat protein 16 (F-box and leucine-rich repeat|
           protein 16) (Spinal cord injury and regeneration-related
           protein 1)
          Length = 479

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 20/61 (32%), Positives = 24/61 (39%)
 Frame = -2

Query: 532 PHRPPLMPMLPAPCTLSSYSRVSCQETESRPTPRPVQVHGQHGRGLQCPPASTPAQVCLP 353
           P +PP  P LP P   +  SRV+                     G  CPPAS PA   +P
Sbjct: 46  PCQPPPPPTLPPPSLATPLSRVALA-------------------GGPCPPASGPASGPVP 86

Query: 352 G 350
           G
Sbjct: 87  G 87

>CDC16_YEAST (P09798) Anaphase-promoting complex subunit CDC16 (Cell division|
           control protein 16)
          Length = 840

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
 Frame = -2

Query: 499 APCTLSSYSRVSCQETESRPTPRPVQVHGQHGRGLQCPP-----ASTPAQVCLPGRLTPA 335
           A   L S +RV  +   S     P + H QH   L   P     ++   Q  LP      
Sbjct: 27  ATSNLKSSNRVLMRNPMS-----PSEQHSQHNSTLAASPFVSNVSAARTQQSLPTDAQND 81

Query: 334 RADQTWSRSNWSTAALQS 281
           R  Q W+R+N +T+  QS
Sbjct: 82  RLQQPWNRTNTATSPYQS 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,291,771
Number of Sequences: 219361
Number of extensions: 1719601
Number of successful extensions: 4113
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4105
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)