Clone Information

BLAST Search Result

Clone Name	basdk24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	COPB2_SCHPO (O42937) Probable coatomer subunit beta' (Beta'-coat...	44	3e-04
2	COPB2_MOUSE (O55029) Coatomer subunit beta' (Beta'-coat protein)...	44	4e-04
3	COPB2_HUMAN (P35606) Coatomer subunit beta' (Beta'-coat protein)...	44	4e-04
4	COPB2_BOVIN (P35605) Coatomer subunit beta' (Beta'-coat protein)...	44	4e-04
5	COPB2_RAT (O35142) Coatomer subunit beta' (Beta'-coat protein) (...	41	0.002
6	COPB2_YEAST (P41811) Coatomer subunit beta' (Beta'-coat protein)...	40	0.005
7	COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat...	40	0.006
8	COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein)...	35	0.15
9	NMNA1_HUMAN (Q9HAN9) Nicotinamide mononucleotide adenylyltransfe...	33	0.75
10	POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Proteas...	32	1.7
11	POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Proteas...	30	6.4
12	MEFV_RAT (Q9JJ25) Pyrin (Marenostrin)	30	6.4
13	LIS1_RAT (P63004) Platelet-activating factor acetylhydrolase IB ...	30	6.4
14	LIS1_MOUSE (P63005) Platelet-activating factor acetylhydrolase I...	30	6.4
15	LIS1_MACFA (Q8HXX0) Platelet-activating factor acetylhydrolase I...	30	6.4
16	LIS1_HUMAN (P43034) Platelet-activating factor acetylhydrolase I...	30	6.4
17	LIS1_BOVIN (P43033) Platelet-activating factor acetylhydrolase I...	30	6.4
18	NOV_RAT (Q9QZQ5) Protein NOV homolog precursor (NovH) (Nephrobla...	29	8.3
19	RESA_PLAFF (P13830) Ring-infected erythrocyte surface antigen pr...	29	8.3
20	RESA_PLAFP (Q26005) Ring-infected erythrocyte surface antigen (F...	29	8.3
21	COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) ...	29	8.3
22	COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) ...	29	8.3

>COPB2_SCHPO (O42937) Probable coatomer subunit beta' (Beta'-coat protein)|
           (Beta'-COP)
          Length = 796

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +3

Query: 465 QIKIICRMDFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           Q K++   + + A+D HPTEPWV+   Y+G V IWN
Sbjct: 7   QRKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIWN 42

to top

>COPB2_MOUSE (O55029) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
           (p102)
          Length = 905

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 471 KIICRMDFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           K+  R D + ++D+HPTEPW+L   Y+G V +WN
Sbjct: 10  KLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWN 43



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 489 DFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           D++  + VHPT+P++L    D L+ +W+
Sbjct: 100 DYIRCIAVHPTQPFILTSSDDMLIKLWD 127

to top

>COPB2_HUMAN (P35606) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
           (p102)
          Length = 905

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 471 KIICRMDFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           K+  R D + ++D+HPTEPW+L   Y+G V +WN
Sbjct: 9   KLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWN 42



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 489 DFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           D++  + VHPT+P++L    D L+ +W+
Sbjct: 99  DYIRCIAVHPTQPFILTSSDDMLIKLWD 126

to top

>COPB2_BOVIN (P35605) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
           (p102)
          Length = 905

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 471 KIICRMDFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           K+  R D + ++D+HPTEPW+L   Y+G V +WN
Sbjct: 9   KLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWN 42



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 489 DFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           D++  + VHPT+P++L    D L+ +W+
Sbjct: 99  DYIRCIAVHPTQPFILTSSDDMLIKLWD 126

to top

>COPB2_RAT (O35142) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
           (p102)
          Length = 904

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 471 KIICRMDFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           K+    D + ++D+HPTEPW+L   Y+G V +WN
Sbjct: 9   KLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWN 42



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 489 DFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           D++  + VHPT+P++L    D L+ +W+
Sbjct: 99  DYIRCIAVHPTQPFILTSSDDMLIKLWD 126

to top

>COPB2_YEAST (P41811) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
          Length = 889

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +3

Query: 483 RMDFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           R D +  +D HPTEPWVL   Y G V +WN
Sbjct: 12  RSDRVKGIDFHPTEPWVLTTLYSGRVELWN 41



 Score = 33.1 bits (74), Expect = 0.58
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 489 DFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           D++ ++ VHPT+P+VL G  D  V +WN
Sbjct: 98  DYIRSIAVHPTKPYVLSGSDDLTVKLWN 125

to top

>COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat protein)|
           (Beta'-COP)
          Length = 1000

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 471 KIICRMDFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           K++ R D +  +D+HP E W+L   Y+G V IWN
Sbjct: 10  KLLARSDRVKCVDLHPVETWLLAALYNGNVHIWN 43



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 489 DFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           D+L ++ VHPT P+V+    D LV +W+
Sbjct: 100 DYLRSLVVHPTLPYVISSSDDMLVKMWD 127

to top

>COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
          Length = 914

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 471 KIICRMDFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           ++  R D +  +D+HP EPW+L   Y+G V I N
Sbjct: 10  RLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMN 43



 Score = 32.7 bits (73), Expect = 0.75
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 489 DFLVAMDVHPTEPWVLVGQYDGLVXIWN 572
           D+L  + VHPT+P VL    D L+ +WN
Sbjct: 100 DYLRCIAVHPTQPLVLTSSDDMLIKLWN 127

to top

>NMNA1_HUMAN (Q9HAN9) Nicotinamide mononucleotide adenylyltransferase 1 (EC|
           2.7.7.1) (NMN adenylyltransferase 1)
          Length = 279

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 20/91 (21%), Positives = 38/91 (41%)
 Frame = +3

Query: 297 ENIEKIDMVLESCVAHKAIENMEDNFLQEIREQVGGKVHQVPLVAVCNPAGETIQSQIKI 476
           EN EK ++VL +C +   I NM     +  ++ + G      +  + +P G+  + +  I
Sbjct: 2   ENSEKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLI 61

Query: 477 ICRMDFLVAMDVHPTEPWVLVGQYDGLVXIW 569
                 ++A        WV V  ++ L   W
Sbjct: 62  PAYHRVIMAELATKNSKWVEVDTWESLQKEW 92

to top

>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 8   GNGKCGRVISRTDEFTHAHCARVAACPSGPA 100
           G+G CG + +       A+C R+A CP+G A
Sbjct: 846 GSGVCGAIFANATAALAANCRRLAPCPTGEA 876

to top

>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 8   GNGKCGRVISRTDEFTHAHCARVAACPSGPA 100
           G+G CG + +       A C R+A CP G A
Sbjct: 847 GSGVCGAIFANATAALAADCRRLAPCPIGEA 877

to top

>MEFV_RAT (Q9JJ25) Pyrin (Marenostrin)|
          Length = 750

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = -1

Query: 303 CSLAAAFPSIQGKCEWTLEAQCQKASRVCR*NSPGILENT*R---QYDHLYC 157
           CS+A   P   G+C    + Q  +A + C   SP  L    R   Q   L+C
Sbjct: 406 CSVAPGDPKASGRCSICFQCQSSRAGKSCEAQSPQFLPQCPRHMKQVQLLFC 457

to top

>LIS1_RAT (P63004) Platelet-activating factor acetylhydrolase IB alpha|
           subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45
           kDa subunit) (PAF-AH alpha) (PAFAH alpha)
           (Lissencephaly-1 protein) (LIS-1)
          Length = 409

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 492 FLVAMDVHPTEPWVLVGQYDGLVXIW 569
           F+ ++D H T P+V+ G  D  V +W
Sbjct: 381 FVTSLDFHKTAPYVVTGSVDQTVKVW 406

to top

>LIS1_MOUSE (P63005) Platelet-activating factor acetylhydrolase IB alpha|
           subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45
           kDa subunit) (PAF-AH alpha) (PAFAH alpha)
           (Lissencephaly-1 protein) (LIS-1)
          Length = 409

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 492 FLVAMDVHPTEPWVLVGQYDGLVXIW 569
           F+ ++D H T P+V+ G  D  V +W
Sbjct: 381 FVTSLDFHKTAPYVVTGSVDQTVKVW 406

to top

>LIS1_MACFA (Q8HXX0) Platelet-activating factor acetylhydrolase IB alpha|
           subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45
           kDa subunit) (PAF-AH alpha) (PAFAH alpha)
           (Lissencephaly-1 protein) (LIS-1)
          Length = 409

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 492 FLVAMDVHPTEPWVLVGQYDGLVXIW 569
           F+ ++D H T P+V+ G  D  V +W
Sbjct: 381 FVTSLDFHKTAPYVVTGSVDQTVKVW 406

to top

>LIS1_HUMAN (P43034) Platelet-activating factor acetylhydrolase IB alpha|
           subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45
           kDa subunit) (PAF-AH alpha) (PAFAH alpha)
           (Lissencephaly-1 protein) (LIS-1)
          Length = 409

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 492 FLVAMDVHPTEPWVLVGQYDGLVXIW 569
           F+ ++D H T P+V+ G  D  V +W
Sbjct: 381 FVTSLDFHKTAPYVVTGSVDQTVKVW 406

to top

>LIS1_BOVIN (P43033) Platelet-activating factor acetylhydrolase IB alpha|
           subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45
           kDa subunit) (PAF-AH alpha) (PAFAH alpha)
           (Lissencephaly-1 protein) (LIS-1)
          Length = 409

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 492 FLVAMDVHPTEPWVLVGQYDGLVXIW 569
           F+ ++D H T P+V+ G  D  V +W
Sbjct: 381 FVTSLDFHKTAPYVVTGSVDQTVKVW 406

to top

>NOV_RAT (Q9QZQ5) Protein NOV homolog precursor (NovH) (Nephroblastoma|
           overexpressed gene protein homolog)
          Length = 351

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 249 PRSTRTFLVWMEKQPPENIEKIDMVLESCVAHKAIENMEDNFLQEI 386
           P +T+T  V  +  P + I+K  MV+ +C  H       + FLQE+
Sbjct: 297 PFNTKTIQVEFQCLPGQIIKKPVMVIGTCTCHSNCPQNNEAFLQEL 342

to top

>RESA_PLAFF (P13830) Ring-infected erythrocyte surface antigen precursor|
          Length = 1073

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 279  MEKQPPENIEKIDMVLESCVAHKAIENMEDNFLQEIREQVGGKVHQ 416
            +E+   EN+E+++  +E  V     EN+E+N  + + E V   V +
Sbjct: 951  VEENVEENVEEVEENVEENVEENVEENVEENVEENVEENVEENVEE 996

to top

>RESA_PLAFP (Q26005) Ring-infected erythrocyte surface antigen (Fragment)|
          Length = 304

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 279 MEKQPPENIEKIDMVLESCVAHKAIENMEDNFLQEIREQVGGKVHQ 416
           +E+   EN+E+++  +E  V     EN+E+N  + + E V   V +
Sbjct: 247 VEEYDEENVEEVEENVEENVEENVEENVEENVEENVEENVEENVEE 292



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 279 MEKQPPENIEKIDMVLESCVAHKAIENMEDNFLQEIREQVGGKVHQ 416
           +E+   EN+E+++  +E  V     EN+E+N  + + E V   V +
Sbjct: 196 VEENVEENVEEVEENVEENVEENVEENVEENVEENVEENVEENVEE 241

to top

>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
           (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
           peptide); Proxenin]
          Length = 1224

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 504 MDVHPTEPWVLVGQYDGLVXIWN 572
           +  HP  PW+L   ++G++ +W+
Sbjct: 15  LSFHPKRPWILTSLHNGVIQLWD 37

to top

>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
           (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
           peptide); Proxenin]
          Length = 1224

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 504 MDVHPTEPWVLVGQYDGLVXIWN 572
           +  HP  PW+L   ++G++ +W+
Sbjct: 15  LSFHPKRPWILTSLHNGVIQLWD 37


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,429,685
Number of Sequences: 219361
Number of extensions: 2234603
Number of successful extensions: 6742
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6737
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result