Clone Information

BLAST Search Result

Clone Name	basdk04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CHM4B_BRARE (Q7ZVC4) Charged multivesicular body protein 4b (Chr...	84	2e-16
2	SNF7_CANGA (Q6FW96) Vacuolar sorting protein SNF7 (Vacuolar prot...	83	4e-16
3	SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar prot...	82	9e-16
4	CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a (Chr...	82	1e-15
5	CHM4C_BRARE (Q6IQ73) Charged multivesicular body protein 4c (Chr...	80	3e-15
6	CHM4B_MOUSE (Q9D8B3) Charged multivesicular body protein 4b (Chr...	79	6e-15
7	CHM4B_HUMAN (Q9H444) Charged multivesicular body protein 4b (Chr...	79	6e-15
8	CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b (Chr...	79	8e-15
9	CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b (Chr...	79	8e-15
10	CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chro...	78	2e-14
11	SNF7_YEAST (P39929) Vacuolar sorting protein SNF7 (DOA4-independ...	77	2e-14
12	SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar prot...	76	5e-14
13	CHMP5_PONPY (Q5RBR3) Charged multivesicular body protein 5 (Chro...	76	7e-14
14	CHMP5_HUMAN (Q9NZZ3) Charged multivesicular body protein 5 (Chro...	76	7e-14
15	CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b (Chr...	75	1e-13
16	SNF7_SCHPO (Q9P7F7) Vacuolar sorting protein snf7 (Vacuolar prot...	75	1e-13
17	SNF7_ASHGO (Q753W3) Vacuolar sorting protein SNF7 (Vacuolar prot...	75	2e-13
18	SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar prot...	74	2e-13
19	CHM4C_XENLA (Q6GNN8) Charged multivesicular body protein 4c (Chr...	74	3e-13
20	CHMP5_RAT (Q4QQV8) Charged multivesicular body protein 5 (Chroma...	73	6e-13
21	CHMP5_MOUSE (Q9D7S9) Charged multivesicular body protein 5 (Chro...	73	6e-13
22	CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chro...	72	1e-12
23	SNF7_CRYNE (Q5KL29) Vacuolar sorting protein SNF7 (Vacuolar prot...	72	1e-12
24	CG301_HUMAN (P59074) Protein CGI-301	70	3e-12
25	CHM4C_HUMAN (Q96CF2) Charged multivesicular body protein 4c (Chr...	69	8e-12
26	CHM4C_MOUSE (Q9D7F7) Charged multivesicular body protein 4c (Chr...	65	1e-10
27	CHM4C_RAT (Q569C1) Charged multivesicular body protein 4c (Chrom...	64	3e-10
28	CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chro...	64	3e-10
29	SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar prot...	62	1e-09
30	SNF7_MAGGR (P0C149) Vacuolar sorting protein SNF7 (Vacuolar prot...	57	3e-08
31	CHMP6_BRARE (Q503V0) Charged multivesicular body protein 6 (Chro...	54	4e-07
32	VPS32_EMENI (Q5B5E0) Vacuolar sorting protein 32	53	5e-07
33	VPS60_YEAST (Q03390) Vacuolar protein sorting-associated protein...	36	0.059
34	RAD50_SULTO (Q96YR5) DNA double-strand break repair rad50 ATPase	34	0.29
35	HISX_GLUOX (Q5FS83) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)	32	1.1
36	CCD41_HUMAN (Q9Y592) Coiled-coil domain-containing protein 41 (N...	32	1.1
37	DPO3A_UREPA (Q9PQ74) DNA polymerase III alpha subunit (EC 2.7.7.7)	32	1.1
38	EXOC3_DROME (Q9V8K2) Exocyst complex component 3 (Exocyst comple...	32	1.5
39	TGA2_ARATH (P43273) Transcription factor TGA2 (HBP-1b homolog) (...	32	1.5
40	GATB_PSEPK (Q88PC0) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe...	32	1.5
41	HTR2_NATPH (P42259) Sensory rhodopsin II transducer (HTR-II) (Me...	31	1.9
42	TPM_BOOMI (O97162) Tropomyosin	30	4.3
43	CCD41_RAT (Q66H89) Coiled-coil domain-containing protein 41	30	4.3
44	CCD41_MOUSE (Q9D5R3) Coiled-coil domain-containing protein 41	30	4.3
45	RABE1_RAT (O35550) Rab GTPase-binding effector protein 1 (Rabapt...	30	5.6
46	RABE1_HUMAN (Q15276) Rab GTPase-binding effector protein 1 (Raba...	30	5.6
47	MUTS_CLOPE (Q8XL87) DNA mismatch repair protein mutS	30	5.6
48	RABE1_MOUSE (O35551) Rab GTPase-binding effector protein 1 (Raba...	29	7.3
49	HIS1_PASMU (P57919) ATP phosphoribosyltransferase (EC 2.4.2.17) ...	29	7.3
50	DNAK_STRPM (Q48RR3) Chaperone protein dnaK (Heat shock protein 7...	29	7.3
51	TGA6_ARATH (Q39140) Transcription factor TGA6 (AtbZIP45)	29	7.3
52	LIFO_PSEAE (Q01725) Lipase chaperone (Lipase foldase) (Lipase he...	29	9.5
53	SY123_ARATH (Q9ZQZ8) Syntaxin-123 (AtSYP123)	29	9.5

>CHM4B_BRARE (Q7ZVC4) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 220

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 1/152 (0%)
 Frame = +2

Query: 74  TMFNRLFGKP-KEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 250
           ++F ++FG   K   +A     + +L ET +M                  AK+ +  KNK
Sbjct: 2   SLFGKMFGSGGKGGKSASPQEAIQRLRETEEMLTKKQEFLEKKIEQELVTAKK-NGTKNK 60

Query: 251 RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKA 430
           RAA+Q+LKRKK YE+Q+ Q+      I  Q   LE A   TE +  +   AKAMKA    
Sbjct: 61  RAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDN 120

Query: 431 TNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
            +ID VD+ M +I EQ E  ++I DA+S P+G
Sbjct: 121 MDIDKVDELMQDIIEQQELAQEISDAISKPVG 152

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>SNF7_CANGA (Q6FW96) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 228

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 44/106 (41%), Positives = 67/106 (63%)
 Frame = +2

Query: 221 AKEFSKAKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTG 400
           A++F    NK  A  +LK+KK+YE Q+ +L +    +  Q+  +E+A    ET+ A++ G
Sbjct: 49  ARKFLTRGNKTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQG 108

Query: 401 AKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLGASAD 538
           AKAMK++    +ID VD+TMDEI EQ E  ++I DA+S PL   A+
Sbjct: 109 AKAMKSIHSGLDIDRVDETMDEIREQVELGEEISDAISRPLYTGAN 154

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>SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 232

 Score = 82.0 bits (201), Expect = 9e-16
 Identities = 51/149 (34%), Positives = 77/149 (51%)
 Frame = +2

Query: 77  MFNRLFGKPKEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRA 256
           M+   FG  K+Q      A +D L E + +                  AK+  ++ NK  
Sbjct: 1   MWGYFFGTSKQQKELPKKAIVD-LREHIQLLNKKQAHLQTQIDQQQQLAKKSLQSGNKNN 59

Query: 257 AIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATN 436
           A   LK+KKLYE Q+++L +    +  Q+  +E A    ET+ A++ GA AMK + K  +
Sbjct: 60  AKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLD 119

Query: 437 IDDVDKTMDEINEQTENMKQIQDALSAPL 523
           +D VD TMDEI EQ E  ++I +A+S PL
Sbjct: 120 LDKVDDTMDEIREQVELNQEISEAISKPL 148

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>CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a|
           (Chromatin-modifying protein 4a) (CHMP4a) (Vacuolar
           protein sorting 7-1) (SNF7-1) (hSnf-1) (SNF7 homolog
           associated with Alix-2)
          Length = 222

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 51/151 (33%), Positives = 75/151 (49%)
 Frame = +2

Query: 86  RLFGKPKEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRAAIQ 265
           RLFGK K++        + KL ET  +                  AK++   KNKRAA+Q
Sbjct: 6   RLFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYG-TKNKRAALQ 64

Query: 266 SLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDD 445
           +L+RKK +EQQ+ Q       +  Q   +E A    E +  +   A++MK   +  +ID 
Sbjct: 65  ALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDIDK 124

Query: 446 VDKTMDEINEQTENMKQIQDALSAPLGASAD 538
           VD+ M +I EQ E  +QI DA+S P+G   D
Sbjct: 125 VDELMTDITEQQEVAQQISDAISRPMGFGDD 155

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>CHM4C_BRARE (Q6IQ73) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 224

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 55/152 (36%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
 Frame = +2

Query: 74  TMFNRLFGKP-KEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 250
           ++F +LFG   K          + KL ET +M                  AK+ +  KNK
Sbjct: 2   SVFGKLFGGGGKGGKGPTPQEAIQKLRETEEMLAKKQDFLEKKIDAELLIAKK-NGTKNK 60

Query: 251 RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKA 430
           RAA+Q+LKRKK YE+Q+ Q+      I  Q   LE A   TE +  +   AKAMK   + 
Sbjct: 61  RAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHEN 120

Query: 431 TNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
            +ID VD  M +I EQ E  ++I DA+S P+G
Sbjct: 121 MDIDKVDDLMQDITEQQELAQEISDAISRPVG 152

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>CHM4B_MOUSE (Q9D8B3) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 224

 Score = 79.3 bits (194), Expect = 6e-15
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
 Frame = +2

Query: 74  TMFNRLFGKPKEQANAGALA---TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAK 244
           ++F +LFG    +A  G       + +L +T +M                  AK+    K
Sbjct: 2   SVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TK 60

Query: 245 NKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 424
           NKRAA+Q+LKRKK YE+Q+ Q+      I  Q   LE A   TE +  +   AKAMKA  
Sbjct: 61  NKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAH 120

Query: 425 KATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
              +ID VD+ M +I +Q E  ++I  A+S P+G
Sbjct: 121 DNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154

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>CHM4B_HUMAN (Q9H444) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b) (Vacuolar
           protein sorting 7-2) (SNF7-2) (hSnf7-2) (SNF7 homolog
           associated with Alix 1) (hVps32)
          Length = 224

 Score = 79.3 bits (194), Expect = 6e-15
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
 Frame = +2

Query: 74  TMFNRLFGKPKEQANAGALA---TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAK 244
           ++F +LFG    +A  G       + +L +T +M                  AK+    K
Sbjct: 2   SVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TK 60

Query: 245 NKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 424
           NKRAA+Q+LKRKK YE+Q+ Q+      I  Q   LE A   TE +  +   AKAMKA  
Sbjct: 61  NKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAH 120

Query: 425 KATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
              +ID VD+ M +I +Q E  ++I  A+S P+G
Sbjct: 121 DNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154

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>CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 79.0 bits (193), Expect = 8e-15
 Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
 Frame = +2

Query: 74  TMFNRLFGKPKEQANAGA-LATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 250
           ++  +LFG   + A   +    + KL +T +M                  AK+    KNK
Sbjct: 2   SLIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLTKKQEFLEKKIEQELVTAKKHG-TKNK 60

Query: 251 RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKA 430
           RAA+Q+LKRKK YE+Q+ Q+      I  Q   LE A   TE +  +   AKAMKA    
Sbjct: 61  RAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDN 120

Query: 431 TNIDDVDKTMDEINEQTENMKQIQDALSAPLGASAD 538
            +I+ VD+ M +I +Q E  ++I DA+S P+G   D
Sbjct: 121 MDIEKVDELMQDIADQQELAQEISDAISKPVGFGED 156

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>CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 79.0 bits (193), Expect = 8e-15
 Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
 Frame = +2

Query: 74  TMFNRLFGKPKEQANAGA-LATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 250
           ++  +LFG   + A   +    + KL +T +M                  AK+    KNK
Sbjct: 2   SLIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLAKKQEFLEKKIEQELVTAKKHG-TKNK 60

Query: 251 RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKA 430
           RAA+Q+LKRKK YE+Q+ Q+      I  Q   LE A   TE +  +   AKAMKA    
Sbjct: 61  RAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDN 120

Query: 431 TNIDDVDKTMDEINEQTENMKQIQDALSAPLGASAD 538
            +I+ VD+ M +I +Q E  ++I DA+S P+G   D
Sbjct: 121 MDIEKVDELMQDIADQQELAQEISDAISKPVGFGED 156

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>CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 5/153 (3%)
 Frame = +2

Query: 83  NRLFGKPKEQANAGAL----ATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEF-SKAKN 247
           NRLFGK K +     L    + +D  +E++D                  + +E  SK   
Sbjct: 2   NRLFGKSKPKVPPSTLTDCISNVDSRSESIDKKISRLDAELVKYKDQMKKMREGPSKNMV 61

Query: 248 KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQK 427
           K+ A++ LK+K++YEQQ + L      +      +++ K T  TVDA++ GAK MK   K
Sbjct: 62  KQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKVGAKEMKKAYK 121

Query: 428 ATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
              ID ++   D++ +  EN  +IQ+ALS   G
Sbjct: 122 QVKIDQIEDLQDQLEDMMENANEIQEALSRSYG 154

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>SNF7_YEAST (P39929) Vacuolar sorting protein SNF7 (DOA4-independent|
           degradation protein 1) (Vacuolar protein
           sorting-associated protein VPS32)
          Length = 240

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 2/156 (1%)
 Frame = +2

Query: 77  MFNRLFGKPKEQANAGALAT--LDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 250
           M++ LFG     A      T  + +L E +++                  A+ F    NK
Sbjct: 1   MWSSLFGWTSSNAKNKESPTKAIVRLREHINLLSKKQSHLRTQITNQENEARIFLTKGNK 60

Query: 251 RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKA 430
             A  +LK+KK  EQ + ++      +  Q+  +E+A    ET+ A++ GAKAMK +   
Sbjct: 61  VMAKNALKKKKTIEQLLSKVEGTMESMEQQLFSIESANLNLETMRAMQEGAKAMKTIHSG 120

Query: 431 TNIDDVDKTMDEINEQTENMKQIQDALSAPLGASAD 538
            +ID VD+TMDEI EQ E   +I DA+S PL   A+
Sbjct: 121 LDIDKVDETMDEIREQVELGDEISDAISRPLITGAN 156

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>SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 76.3 bits (186), Expect = 5e-14
 Identities = 47/150 (31%), Positives = 75/150 (50%)
 Frame = +2

Query: 77  MFNRLFGKPKEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRA 256
           M+N LFG  K+Q        + +L E + M                  A+++    NK  
Sbjct: 1   MWNYLFGGNKQQKKEYPKKAIVELREHIQMLNKKRSHLELQIADQDALARKYITT-NKAL 59

Query: 257 AIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATN 436
           A  +LKRKK YE  + ++ N    +  Q+  +E A    ET+ A++ GA+AMK +    +
Sbjct: 60  AKNALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHGEYD 119

Query: 437 IDDVDKTMDEINEQTENMKQIQDALSAPLG 526
           +D V+ TMD+I EQ E   +I +A+S P+G
Sbjct: 120 VDKVENTMDDIREQVELADEISEAISRPVG 149

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>CHMP5_PONPY (Q5RBR3) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score = 75.9 bits (185), Expect = 7e-14
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 6/154 (3%)
 Frame = +2

Query: 83  NRLFGKPKEQANAGALA----TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKN- 247
           NRLFGK K +A   +L     T+D   E++D                  + +E   AKN 
Sbjct: 2   NRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKNM 60

Query: 248 -KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 424
            K+ A++ LK+K++YEQQ + L      +      +++ K T  TVDA++ G K MK   
Sbjct: 61  VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120

Query: 425 KATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
           K   ID ++   D++ +  E+  +IQ+ALS   G
Sbjct: 121 KQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYG 154

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>CHMP5_HUMAN (Q9NZZ3) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5) (Vacuolar protein sorting 60) (Vps60)
           (hVps60) (SNF7 domain-containing protein 2)
          Length = 219

 Score = 75.9 bits (185), Expect = 7e-14
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 6/154 (3%)
 Frame = +2

Query: 83  NRLFGKPKEQANAGALA----TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKN- 247
           NRLFGK K +A   +L     T+D   E++D                  + +E   AKN 
Sbjct: 2   NRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKNM 60

Query: 248 -KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 424
            K+ A++ LK+K++YEQQ + L      +      +++ K T  TVDA++ G K MK   
Sbjct: 61  VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120

Query: 425 KATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
           K   ID ++   D++ +  E+  +IQ+ALS   G
Sbjct: 121 KQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYG 154

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>CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 227

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 43/95 (45%), Positives = 56/95 (58%)
 Frame = +2

Query: 242 KNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAM 421
           KNKRAA+Q+LKRKK YE+Q+ Q+      I  Q   LE A   TE +  +   AKAMKA 
Sbjct: 62  KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAA 121

Query: 422 QKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
               +ID VD+ M +I EQ E   +I  A+S P+G
Sbjct: 122 HDNMDIDKVDELMQDIAEQQELADEISTAISKPVG 156

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>SNF7_SCHPO (Q9P7F7) Vacuolar sorting protein snf7 (Vacuolar protein|
           sorting-associated protein vps32)
          Length = 222

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 35/98 (35%), Positives = 63/98 (64%)
 Frame = +2

Query: 245 NKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 424
           NKR A+ +LKRKK++E ++ ++   +  I  Q+  ++ A    ET+ A+R GA+AMK++Q
Sbjct: 56  NKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQ 115

Query: 425 KATNIDDVDKTMDEINEQTENMKQIQDALSAPLGASAD 538
           +  + D VD+ MD+I +Q    ++I   +S P+G +A+
Sbjct: 116 RGMDADKVDQIMDKIRDQQTISEEISTMISTPVGLNAE 153

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>SNF7_ASHGO (Q753W3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 237

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
 Frame = +2

Query: 77  MFNRLFGK--PKEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 250
           M++ LFG    K++      A L+ L E + +                  A+ F    NK
Sbjct: 1   MWSYLFGSGNAKQKKELPKKAILE-LREHIQLLSKKQAHLQTQMTSQEESARHFLSKGNK 59

Query: 251 RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKA 430
             A  +LKRKK++E Q+ ++      +  Q+  +E A    ET+ A++ GA AMK + + 
Sbjct: 60  NMAKAALKRKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQGASAMKHIHEG 119

Query: 431 TNIDDVDKTMDEINEQTENMKQIQDALSAPL 523
            +++ VD+TMDEI EQ E  ++I +A+S PL
Sbjct: 120 LDVERVDETMDEIREQVELGEEISEAISRPL 150

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>SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 39/102 (38%), Positives = 61/102 (59%)
 Frame = +2

Query: 221 AKEFSKAKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTG 400
           A+++  +K    A  +LKRKK YE  + ++ N    +  Q+I +E A    ET+ A++ G
Sbjct: 49  ARKYVSSKQTTLAKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQG 108

Query: 401 AKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
           AKAMK +    ++D V+ TMDEI EQ E   +I +A+S P+G
Sbjct: 109 AKAMKQIHGEYDVDKVEDTMDEIREQVELADEISEAISRPVG 150

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>CHM4C_XENLA (Q6GNN8) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 227

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 47/141 (33%), Positives = 71/141 (50%)
 Frame = +2

Query: 104 KEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRAAIQSLKRKK 283
           K +    A   L KL ET +M                  AK+    KNKRAA+Q+LK+KK
Sbjct: 19  KNRKGPSAQEALFKLRETEEMLTKKQEYLEKKIELELATAKKHG-TKNKRAALQALKKKK 77

Query: 284 LYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMD 463
             E+Q+ Q+      I  Q   LE +   TE +  +   AKAMKA  +  +++ +D  M 
Sbjct: 78  RLEKQLAQIDGTLSTIEFQREALENSHTNTEVLKNMGYAAKAMKAAHENMDLEKIDDLMQ 137

Query: 464 EINEQTENMKQIQDALSAPLG 526
           +I+EQ +  ++I DA+S P+G
Sbjct: 138 DIHEQQDVAQEISDAISRPVG 158

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>CHMP5_RAT (Q4QQV8) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score = 72.8 bits (177), Expect = 6e-13
 Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
 Frame = +2

Query: 83  NRLFGKPKEQANAGALA----TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKN- 247
           NR FGK K +A   +L     T+D   E++D                  + +E   AKN 
Sbjct: 2   NRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKNM 60

Query: 248 -KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 424
            K+ A++ LK+K++YEQQ + L      +      +++ K T  TVDA++ G K MK   
Sbjct: 61  VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120

Query: 425 KATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
           K   ID ++   D++ +  E+  +IQ+AL    G
Sbjct: 121 KEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYG 154

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>CHMP5_MOUSE (Q9D7S9) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5) (SNF7 domain-containing protein 2)
          Length = 219

 Score = 72.8 bits (177), Expect = 6e-13
 Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
 Frame = +2

Query: 83  NRLFGKPKEQANAGALA----TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKN- 247
           NR FGK K +A   +L     T+D   E++D                  + +E   AKN 
Sbjct: 2   NRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKNM 60

Query: 248 -KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 424
            K+ A++ LK+K++YEQQ + L      +      +++ K T  TVDA++ G K MK   
Sbjct: 61  VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120

Query: 425 KATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
           K   ID ++   D++ +  E+  +IQ+AL    G
Sbjct: 121 KEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYG 154

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>CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
 Frame = +2

Query: 83  NRLFGKPKEQANAGALA----TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEF-SKAKN 247
           NR+FGK K +     L      +D   E+++                  + +E  SK   
Sbjct: 2   NRIFGKSKPKVPPPTLTDCITNVDGRAESIEKKISRLDAELIKYKDQMKKMREGPSKNMV 61

Query: 248 KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQK 427
           K+ A++ LK+K++YEQQ + L      +      ++  K T  TVDA++ GAK MK   K
Sbjct: 62  KQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKVGAKEMKKAYK 121

Query: 428 ATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
              ID ++   D++ +  EN  +IQ+ALS   G
Sbjct: 122 QVKIDQIEDLQDQLEDMMENANEIQEALSRSYG 154

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>SNF7_CRYNE (Q5KL29) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 220

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
 Frame = +2

Query: 224 KEFSKAK-----NKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDA 388
           +E  KAK     NKR A+ +L++KK +E +++++   +L +  Q+  +E+A    ET+ A
Sbjct: 45  EEMKKAKANATGNKRLAMAALRQKKAHENELDRIAGTRLTLETQVNAIESANLNAETMVA 104

Query: 389 LRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
           ++ GA A+K +      + VD TMD+I EQ +    I DA+S P+G
Sbjct: 105 MKKGADALKGIHSNLTAEGVDATMDKIREQMDLTNDISDAISNPVG 150

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>CG301_HUMAN (P59074) Protein CGI-301|
          Length = 171

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 40/95 (42%), Positives = 56/95 (58%)
 Frame = +2

Query: 242 KNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAM 421
           KNK AA+Q+LKRKK YE+Q+ Q+      I  Q   LE A   TE +  + + AKA KA 
Sbjct: 20  KNKPAALQALKRKKRYEKQLAQIDGTLSTIEFQQQALENANTNTEVLKNMGSAAKAKKAA 79

Query: 422 QKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
               +ID VD+ M +I +Q E  ++I  A+S P+G
Sbjct: 80  HDNMDIDKVDELMQDIADQQELGEEISTAISKPVG 114

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>CHM4C_HUMAN (Q96CF2) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c) (Vacuolar
           protein sorting 7-3) (SNF7-3) (hSnf7-3) (SNF7 homolog
           associated with Alix 3)
          Length = 233

 Score = 68.9 bits (167), Expect = 8e-12
 Identities = 46/148 (31%), Positives = 72/148 (48%)
 Frame = +2

Query: 95  GKPKEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRAAIQSLK 274
           G  K +A       L +L ET +M                  AK+    +NKRAA+Q+LK
Sbjct: 12  GSSKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHG-TQNKRAALQALK 70

Query: 275 RKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDK 454
           RKK +E+Q+ Q+      I  Q   LE +   TE +  +   AKAMK++ +  +++ +D 
Sbjct: 71  RKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDD 130

Query: 455 TMDEINEQTENMKQIQDALSAPLGASAD 538
            M EI EQ +  ++I +A S  +G   D
Sbjct: 131 LMQEITEQQDIAQEISEAFSQRVGFGDD 158

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>CHM4C_MOUSE (Q9D7F7) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 232

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 43/137 (31%), Positives = 69/137 (50%)
 Frame = +2

Query: 104 KEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRAAIQSLKRKK 283
           + +A   A   L +L ET +M                  AK+   ++NKRAA+Q+LKRKK
Sbjct: 15  RARAAPSAQEALARLRETEEMLAKKQEYLENRIQRELALAKKHG-SQNKRAALQALKRKK 73

Query: 284 LYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMD 463
            +E+Q+ Q+      I  Q   LE +   TE +  +   AKAMKA+    +++ +D  M 
Sbjct: 74  RFEKQLTQVDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKAVHDNMDLNKIDDLMQ 133

Query: 464 EINEQTENMKQIQDALS 514
           +I EQ +  ++I +A S
Sbjct: 134 DITEQQDIAQEISEAFS 150

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>CHM4C_RAT (Q569C1) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 232

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 34/92 (36%), Positives = 56/92 (60%)
 Frame = +2

Query: 239 AKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKA 418
           ++NKRAA+Q+LKRKK +E+Q+ Q+      I  Q   LE +   TE +  +   AKAMKA
Sbjct: 59  SQNKRAALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKA 118

Query: 419 MQKATNIDDVDKTMDEINEQTENMKQIQDALS 514
           + +  +++ +D  M +I EQ +  ++I +A S
Sbjct: 119 VHENMDLNKIDDLMQDITEQQDIAQEISEAFS 150

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>CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 220

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 5/153 (3%)
 Frame = +2

Query: 83  NRLFGKPKEQAN----AGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEF-SKAKN 247
           NR+FG+ K +         ++ +D   E++D                  + ++  SK   
Sbjct: 2   NRIFGRGKPKGPPPNLTDCISGVDSRAESVDKKIARLDAELMKYKDQMKKMRDGPSKNMV 61

Query: 248 KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQK 427
           K+ A++ LK+K++YE Q +QL      +      ++  K T  TV+A++ GAK MK   K
Sbjct: 62  KQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTIQTLKDTKTTVEAMKIGAKEMKKAYK 121

Query: 428 ATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
              ID ++   D++ +  E+  ++Q+ALS   G
Sbjct: 122 NVKIDQIEDLQDQLEDMMEDANEVQEALSRSYG 154

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>SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 215

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 36/98 (36%), Positives = 53/98 (54%)
 Frame = +2

Query: 245 NKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 424
           NK  A  +LK+KK  E+Q E +      +   +  LE A    ET+ A++ GAKAMK + 
Sbjct: 52  NKLMAKNALKKKKNLEKQQETVQGSIDSLQTSINTLETANLNLETMKAMQEGAKAMKQIH 111

Query: 425 KATNIDDVDKTMDEINEQTENMKQIQDALSAPLGASAD 538
              NID VDK MDE  +Q    +++ +A+S P   + D
Sbjct: 112 GNMNIDKVDKIMDETRDQVALSEEVSEAISRPYANAYD 149

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>SNF7_MAGGR (P0C149) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 29/90 (32%), Positives = 54/90 (60%)
 Frame = +2

Query: 245 NKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 424
           NK AA  +LKRKK +E  ++Q  +    +  Q+  +E+A    ET++A++   KAM+ + 
Sbjct: 59  NKNAAKAALKRKKTHEHSLDQTLSQIGTLEQQINAIESANINMETLEAMKKAGKAMEDIH 118

Query: 425 KATNIDDVDKTMDEINEQTENMKQIQDALS 514
               ++ VD+TMD++ EQ    ++I +A++
Sbjct: 119 GKLTVEKVDETMDKLREQNALSEEIVNAIT 148

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>CHMP6_BRARE (Q503V0) Charged multivesicular body protein 6 (Chromatin-modifying|
           protein 6)
          Length = 205

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 29/101 (28%), Positives = 54/101 (53%)
 Frame = +2

Query: 221 AKEFSKAKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTG 400
           AK+  K   K  A+  LK+K+  +Q +E+  N    +   +  +E A+   + ++ L+ G
Sbjct: 47  AKQLLKDGKKDKALLLLKKKRYQDQLLEKTENQISNLERMVQDIEFAQIEMKVIEGLKVG 106

Query: 401 AKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPL 523
              +K M +  +I++V+K MDE ++  E  KQI + L+  L
Sbjct: 107 NDCLKKMHEVLSIEEVEKIMDETHDAIEYQKQIDEMLAGSL 147

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>VPS32_EMENI (Q5B5E0) Vacuolar sorting protein 32|
          Length = 242

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
 Frame = +2

Query: 245 NKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 424
           NK AA  +L+RKK++E+ +EQ     +++  Q+  +EAA    ET+ A++    AM+ + 
Sbjct: 56  NKNAAKAALRRKKVHEKNLEQTQAQIVQLEQQIYSIEAANINHETLAAMKAAGAAMEKIH 115

Query: 425 KATNIDDVDKTM--DEINEQTENMKQIQDALSAP 520
               ++ VD+T+  D++ EQ     +I  A++ P
Sbjct: 116 NGMTVEQVDETILRDKLREQQAINDEIAIAITNP 149

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>VPS60_YEAST (Q03390) Vacuolar protein sorting-associated protein VPS60|
          Length = 262

 Score = 36.2 bits (82), Expect = 0.059
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
 Frame = +2

Query: 224 KEFSKAKNK-----RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDA 388
           K   ++ NK     + A++ L ++K  E   + L +    +    +  +  + T  T++A
Sbjct: 87  KNLQRSNNKQPSLRKQALKILNKRKQLENMKDSLDSQSWSMTQAQLTNDNLQNTMITINA 146

Query: 389 LRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALS 514
           L+    AMKA     NID +    DE+ +  E   ++Q+ L+
Sbjct: 147 LKQTNNAMKAQYGKINIDKLQDMQDEMLDLIEQGDELQEVLA 188

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>RAD50_SULTO (Q96YR5) DNA double-strand break repair rad50 ATPase|
          Length = 879

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 21/97 (21%), Positives = 47/97 (48%)
 Frame = +2

Query: 236 KAKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMK 415
           K K KR   +  K+    + ++E+L   + + +     L++ K     +++  +  K   
Sbjct: 326 KLKRKRELEEDYKKYIEIKGELEELEEKERKFNSLSDRLKSLKIKLSEIESKISNRKI-- 383

Query: 416 AMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
               + NI+++DK + ++NE   N  Q ++ L++ LG
Sbjct: 384 ----SINIEELDKELQKLNEDLNNKNQEREKLASQLG 416

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>HISX_GLUOX (Q5FS83) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 430

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 320 QLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDE 466
           +LRI  + I  EAA+   + +DALRT A+ ++    A    D+D T ++
Sbjct: 64  KLRISAEEIASEAARVPADLMDALRTAARRIETFHAAQMPKDLDFTDED 112

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>CCD41_HUMAN (Q9Y592) Coiled-coil domain-containing protein 41 (NY-REN-58|
           antigen)
          Length = 693

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = +2

Query: 218 RAKEFSKAKNK--RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTET 379
           R +++++AK K  RAAI   KRK L+E +++       R+ +++ +LEA K   ET
Sbjct: 541 REEKYNQAKEKLQRAAIAQKKRKSLHENKLK-------RLQEKVEVLEAKKEELET 589

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>DPO3A_UREPA (Q9PQ74) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 969

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 278 KKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRT-GAKAMKAMQKATNIDDV 448
           K +YE Q +++  F +  +D+ +  + AKA T  +  L + G K +    K  NI+D+
Sbjct: 497 KMIYENQNKKIDLFNINYNDKFVFEDLAKARTNGIFQLESPGMKKVLLKVKPQNIEDI 554

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>EXOC3_DROME (Q9V8K2) Exocyst complex component 3 (Exocyst complex component|
           Sec6)
          Length = 738

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = +2

Query: 248 KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKAT--TETVDALRTGAKAMKAM 421
           ++AA++ ++       Q+E++  ++ RI  +   +EA   T     +D +R G K ++  
Sbjct: 11  RQAALKDIQNMLQRPGQLEKVEQYRHRIARKKASVEALLKTGMQGQLDGVRVGLKQLETC 70

Query: 422 QKATNIDDVDKTMDEINEQTENMKQIQDAL 511
            +  ++ +V + MDE+      + ++ DAL
Sbjct: 71  MQ--DVREVRRRMDEVERLLRGVPEVYDAL 98

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>TGA2_ARATH (P43273) Transcription factor TGA2 (HBP-1b homolog) (AHBP-1b)|
           (AtbZIP20)
          Length = 330

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 28/98 (28%), Positives = 48/98 (48%)
 Frame = +2

Query: 239 AKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKA 418
           A+N+ AA +S  RKK Y QQ+E   N +L++    +  E  +A  + V    TG +A   
Sbjct: 52  AQNREAARKSRLRKKAYVQQLE---NSRLKL--TQLEQELQRARQQGVFISGTGDQAHST 106

Query: 419 MQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLGAS 532
                   D + +   + E+ + M +++ AL+A  G S
Sbjct: 107 GGNGALAFDAEHSR-WLEEKNKQMNELRSALNAHAGDS 143

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>GATB_PSEPK (Q88PC0) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 481

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = +2

Query: 305 QLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAM---KAMQKATNIDDVDKTMDEI-- 469
           QLG   LRI D  I  + AK   E + A    A ++   K +++ T+   +DK +DE+  
Sbjct: 371 QLGGMLLRIRDNTISGKIAKTVFEAMAAGEGDADSIIESKGLKQVTDTGAIDKMLDEMLA 430

Query: 470 --NEQTENMKQIQDA 508
              EQ E  +   +A
Sbjct: 431 ANAEQVEQYRAADEA 445

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>HTR2_NATPH (P42259) Sensory rhodopsin II transducer (HTR-II) (Methyl-accepting|
           phototaxis protein II) (MPP-II)
          Length = 534

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +2

Query: 347 MLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDAL 511
           + E  KA TE +D L    +     +  T +DD+ +T D+++E  E ++   DAL
Sbjct: 376 LAEETKAATEEIDDLIGTVQD----RTQTTVDDIRETSDQVSEGVETVEDTVDAL 426

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>TPM_BOOMI (O97162) Tropomyosin|
          Length = 284

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 22/83 (26%), Positives = 42/83 (50%)
 Frame = +2

Query: 263 QSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATNID 442
           ++L++++ YE QI Q+ N           L+ A+A  E  +      ++++ +QK     
Sbjct: 213 KALQKEETYEMQIRQMTN----------RLQEAEARAEFAE------RSVQKLQK----- 251

Query: 443 DVDKTMDEINEQTENMKQIQDAL 511
           +VD+  DE+ ++ E  K I D L
Sbjct: 252 EVDRLEDELVQEKEKYKAISDEL 274

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>CCD41_RAT (Q66H89) Coiled-coil domain-containing protein 41|
          Length = 692

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +2

Query: 218 RAKEFSKAKNK--RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTET 379
           R +++++AK K  RAA    KRK L+E +++       R+ +++ +LEA K   ET
Sbjct: 540 REEKYNQAKEKLQRAATAQKKRKSLHENKLK-------RLQEKVEVLEAKKEELET 588

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>CCD41_MOUSE (Q9D5R3) Coiled-coil domain-containing protein 41|
          Length = 692

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +2

Query: 218 RAKEFSKAKNK--RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTET 379
           R +++++AK K  RAA    KRK L+E +++       R+ +++ +LEA K   ET
Sbjct: 540 REEKYNQAKEKLQRAATAQKKRKSLHENKLK-------RLQEKVEVLEAKKEELET 588

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>RABE1_RAT (O35550) Rab GTPase-binding effector protein 1 (Rabaptin-5)|
            (Rabaptin-5alpha)
          Length = 862

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
 Frame = +2

Query: 227  EFSKAKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAK 406
            E  + K ++  ++S  R+K   QQ+E L   ++ + +Q+    AAKAT E +       +
Sbjct: 747  ELERIKVEKGQLESTLREK--SQQLESLQEIKVNLEEQLKKETAAKATVEQL----MFEE 800

Query: 407  AMKAMQKATNID-------DVDKTMDEINEQTENMKQ 496
              KA +  T +D       D  K    +  Q E ++Q
Sbjct: 801  KNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQ 837

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>RABE1_HUMAN (Q15276) Rab GTPase-binding effector protein 1 (Rabaptin-5)|
            (Rabaptin-5alpha) (Rabaptin-4) (NY-REN-17 antigen)
          Length = 862

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
 Frame = +2

Query: 227  EFSKAKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAK 406
            E  + K ++  ++S  R+K   QQ+E L   ++ + +Q+    AAKAT E +       +
Sbjct: 747  ELERIKVEKGQLESTLREK--SQQLESLQEIKISLEEQLKKETAAKATVEQL----MFEE 800

Query: 407  AMKAMQKATNID-------DVDKTMDEINEQTENMKQ 496
              KA +  T +D       D  K    +  Q E ++Q
Sbjct: 801  KNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQ 837

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>MUTS_CLOPE (Q8XL87) DNA mismatch repair protein mutS|
          Length = 909

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 18/90 (20%), Positives = 41/90 (45%)
 Frame = +2

Query: 227 EFSKAKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAK 406
           E    +N   A++ +    ++ ++I + G       DQ   +E AK      D +    +
Sbjct: 741 EIHGVRNYSVAVKEVDNNIIFLRKIIEGGA------DQSYGIEVAKLAGIPDDVINRAKE 794

Query: 407 AMKAMQKATNIDDVDKTMDEINEQTENMKQ 496
            ++ ++  ++ D++D  + E+N   E MK+
Sbjct: 795 ILEKLEMESSKDNLDLALKEVNASKEEMKE 824

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>RABE1_MOUSE (O35551) Rab GTPase-binding effector protein 1 (Rabaptin-5)|
           (Rabaptin-5alpha)
          Length = 862

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +2

Query: 227 EFSKAKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTE 376
           E  + K ++  ++S  R+K   QQ+E L   ++ + +Q+    AAKAT E
Sbjct: 747 ELERIKVEKGQLESTLREK--SQQLESLQEMKVNLEEQLKKETAAKATVE 794

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>HIS1_PASMU (P57919) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)|
           (ATP-PRT)
          Length = 299

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
 Frame = +2

Query: 248 KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQK 427
           +RAA  S +++ L ++ + ++   Q     + IML A K   E + AL  G +    +  
Sbjct: 197 QRAAELSPEKQALVDKLLTRIQGVQQAAESKYIMLHAPKEKLEEITALLPGVENPTILPL 256

Query: 428 ATNIDDVDKTMDEINEQT---ENMKQIQDA 508
           A   D+    M  ++++    E M+Q++DA
Sbjct: 257 AH--DNSKVAMHVVSQENLFWETMEQLKDA 284

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>DNAK_STRPM (Q48RR3) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 608

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +2

Query: 383 DALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENM--KQIQDALSAPLGA 529
           DA ++    +KA Q++ N+DD+   ++ +NE+ + +  K  + A++A   A
Sbjct: 533 DAAQSALDELKAAQESGNLDDMKAKLEALNEKAQALAVKMYEQAVAAQQAA 583

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>TGA6_ARATH (Q39140) Transcription factor TGA6 (AtbZIP45)|
          Length = 330

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 26/96 (27%), Positives = 46/96 (47%)
 Frame = +2

Query: 239 AKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKA 418
           A+N+ AA +S  RKK Y QQ+E   N +L++    +  E  +A  + V    +G +A   
Sbjct: 52  AQNREAARKSRLRKKAYVQQLE---NSRLKL--TQLEQELQRARQQGVFISSSGDQAHST 106

Query: 419 MQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 526
                   D + +   + E+   M +++ AL+A  G
Sbjct: 107 GGNGALAFDAEHSR-WLEEKNRQMNELRSALNAHAG 141

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>LIFO_PSEAE (Q01725) Lipase chaperone (Lipase foldase) (Lipase helper protein)|
           (Lipase modulator)
          Length = 340

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +2

Query: 239 AKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKA 418
           A+ K AAI  L+     +QQ   L   Q  +  Q   L+AA A  E +  +R      +A
Sbjct: 210 AEEKAAAIDRLRASLPEDQQESVLPQLQSELQQQTAALQAAGAGPEAIRQMRQQLVGAEA 269

Query: 419 MQKATNID 442
             +   +D
Sbjct: 270 TTRLEQLD 277

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>SY123_ARATH (Q9ZQZ8) Syntaxin-123 (AtSYP123)|
          Length = 305

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
 Frame = +2

Query: 233 SKAKNKRAAIQSLKRKKLYEQ-------QIEQLGNFQLRIHDQMIMLEAAKATTETVDAL 391
           S A   R ++ S   KKL +        + +    ++  +  +   +   KA  ETV+ L
Sbjct: 121 SSADRTRTSVVSGLGKKLKDMMDDFQRLRTKMATEYKETVERRYFTVTGQKADEETVEKL 180

Query: 392 RTGAKAMKAMQKATNID---DVDKTMDEINEQTENMKQIQDAL 511
            +  ++ + +QKA        V  T+ EI E+ + +K+I+ +L
Sbjct: 181 ISSGESERFLQKAIQEQGRGQVMDTLSEIQERHDTVKEIERSL 223


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,738,441
Number of Sequences: 219361
Number of extensions: 1040052
Number of successful extensions: 3192
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 3110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3182
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result