ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdl19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476420.1| Oryza sativa (japonica cultivar-group), mRNA 137 4e-29
2dbj|AK070421.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 4e-29
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
4dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
5ref|XM_469887.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
6dbj|AK105625.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
7gb|BT016414.1| Zea mays clone Contig247 mRNA sequence 78 3e-11
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 74 5e-10
9gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom... 74 5e-10
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
11gb|AY023290.1| Oryza sativa microsatellite MRG5615 containing (G... 50 0.008
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
13gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.008
14emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb... 50 0.008
15ref|XM_466597.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.47
16ref|XM_466596.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.47
17gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence 44 0.47
18dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
19dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
20dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
21dbj|AK073602.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.47
22emb|AL391833.10| Human DNA sequence from clone RP11-307K1 on chr... 44 0.47
23dbj|AK064340.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.47
24gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 42 1.9
25dbj|AB017043.1| Rattus norvegicus gene for hepatocyte nuclear fa... 42 1.9
26ref|XM_863518.1| PREDICTED: Canis familiaris similar to DNA-dire... 40 7.4
27ref|XM_849548.1| PREDICTED: Canis familiaris similar to DNA-dire... 40 7.4
28ref|XM_863514.1| PREDICTED: Canis familiaris similar to Cdc42 bi... 40 7.4
29ref|XM_863513.1| PREDICTED: Canis familiaris similar to Cdc42 bi... 40 7.4
30ref|XM_863511.1| PREDICTED: Canis familiaris similar to Cdc42 bi... 40 7.4
31ref|XM_547990.2| PREDICTED: Canis familiaris similar to Cdc42 bi... 40 7.4
32emb|BX004827.18| Human DNA sequence from clone RP13-391G2 on chr... 40 7.4
33emb|AL732314.18| Human DNA sequence from clone RP13-465B17 on ch... 40 7.4
34emb|AL513284.12| Human DNA sequence from clone RP11-518D3 on chr... 40 7.4
35emb|AL357932.15| Human DNA sequence from clone RP11-435N12 on ch... 40 7.4
36gb|AC023742.4| Drosophila melanogaster X BAC RP98-43C24 (Roswell... 40 7.4
37dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
38dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
40gb|BT006013.1| Drosophila melanogaster LD11736 full insert cDNA 40 7.4
41gb|AC007405.6| Homo sapiens BAC clone RP11-570C16 from 2, comple... 40 7.4
42ref|NM_174457.2| Bos taurus seryl-tRNA synthetase 2 (SARS2), mRNA 40 7.4
43dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
44dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
45dbj|AP003609.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
46dbj|AP004775.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
47dbj|AP005469.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
48gb|BT021900.1| Bos taurus seryl-tRNA synthetase 2 (SARS2), mRNA,... 40 7.4
49gb|BT021873.1| Bos taurus seryl-tRNA synthetase 2 (SARS2), mRNA,... 40 7.4
50gb|BT021603.1| Bos taurus seryl-tRNA synthetase 2 (SARS2), mRNA,... 40 7.4
51gb|BT021565.1| Bos taurus seryl-tRNA synthetase 2 (SARS2), mRNA,... 40 7.4
52emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 7.4
53gb|AE003431.5| Drosophila melanogaster chromosome X, section 15 ... 40 7.4
54dbj|AP002881.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
55emb|AL606599.3|OSJN00034 Oryza sativa genomic DNA, chromosome 4,... 40 7.4
56dbj|AB029947.1| Bos taurus SerRSmt mRNA for mitochondrial seryl-... 40 7.4 
>ref|XM_476420.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1473

 Score =  137 bits (69), Expect = 4e-29
 Identities = 102/113 (90%)
 Strand = Plus / Plus

                                                                       
Query: 176 ccgccatggacgactgtatccggaggctggaggaggagaagagcaagatcgaggtgttcc 235
           |||||||||  ||||| ||||||||||| |||||||||| | ||||||||||||| ||||
Sbjct: 226 ccgccatgggtgactgcatccggaggctcgaggaggagatgggcaagatcgaggtcttcc 285

                                                                
Query: 236 ggcgcgagctccccctctgcgcacgcctcctcgctgacgtgattgatgtgatg 288
           | |||||||||||||||||||  ||||||||||| ||||||||||||||||||
Sbjct: 286 gccgcgagctccccctctgcgtccgcctcctcgccgacgtgattgatgtgatg 338



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 355 ggcgacaagagcaactggatgagcaccgcgcagctctggac 395
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggcgacaagagcaactggatgagcaccgcgcagctctggac 436



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 113 tgagcctggatttgaagatgttcgcggccaagagc 147
           ||||||||||| | ||||||||||| |||||||||
Sbjct: 157 tgagcctggatctcaagatgttcgccgccaagagc 191
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>dbj|AK070421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M12, full
           insert sequence
          Length = 1473

 Score =  137 bits (69), Expect = 4e-29
 Identities = 102/113 (90%)
 Strand = Plus / Plus

                                                                       
Query: 176 ccgccatggacgactgtatccggaggctggaggaggagaagagcaagatcgaggtgttcc 235
           |||||||||  ||||| ||||||||||| |||||||||| | ||||||||||||| ||||
Sbjct: 226 ccgccatgggtgactgcatccggaggctcgaggaggagatgggcaagatcgaggtcttcc 285

                                                                
Query: 236 ggcgcgagctccccctctgcgcacgcctcctcgctgacgtgattgatgtgatg 288
           | |||||||||||||||||||  ||||||||||| ||||||||||||||||||
Sbjct: 286 gccgcgagctccccctctgcgtccgcctcctcgccgacgtgattgatgtgatg 338



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 355 ggcgacaagagcaactggatgagcaccgcgcagctctggac 395
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggcgacaagagcaactggatgagcaccgcgcagctctggac 436



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 113 tgagcctggatttgaagatgttcgcggccaagagc 147
           ||||||||||| | ||||||||||| |||||||||
Sbjct: 157 tgagcctggatctcaagatgttcgccgccaagagc 191
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Plus

                                                                           
Query: 176     ccgccatggacgactgtatccggaggctggaggaggagaagagcaagatcgaggtgttcc 235
               |||||||||  ||||| ||||||||||| |||||||||| | ||||||||||||| ||||
Sbjct: 1045267 ccgccatgggtgactgcatccggaggctcgaggaggagatgggcaagatcgaggtcttcc 1045326

                                                      
Query: 236     ggcgcgagctccccctctgcgcacgcctcctcgctgacg 274
               | |||||||||||||||||||  ||||||||||| ||||
Sbjct: 1045327 gccgcgagctccccctctgcgtccgcctcctcgccgacg 1045365



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                        
Query: 355     ggcgacaagagcaactggatgagcaccgcgcagctctggac 395
               |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045528 ggcgacaagagcaactggatgagcaccgcgcagctctggac 1045568



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 113     tgagcctggatttgaagatgttcgcggccaagagc 147
               ||||||||||| | ||||||||||| |||||||||
Sbjct: 1045198 tgagcctggatctcaagatgttcgccgccaagagc 1045232
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>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022B05
          Length = 151317

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Plus

                                                                         
Query: 176   ccgccatggacgactgtatccggaggctggaggaggagaagagcaagatcgaggtgttcc 235
             |||||||||  ||||| ||||||||||| |||||||||| | ||||||||||||| ||||
Sbjct: 42855 ccgccatgggtgactgcatccggaggctcgaggaggagatgggcaagatcgaggtcttcc 42914

                                                    
Query: 236   ggcgcgagctccccctctgcgcacgcctcctcgctgacg 274
             | |||||||||||||||||||  ||||||||||| ||||
Sbjct: 42915 gccgcgagctccccctctgcgtccgcctcctcgccgacg 42953



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                      
Query: 355   ggcgacaagagcaactggatgagcaccgcgcagctctggac 395
             |||||||||||||||||||||||||||||||||||||||||
Sbjct: 43116 ggcgacaagagcaactggatgagcaccgcgcagctctggac 43156



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 113   tgagcctggatttgaagatgttcgcggccaagagc 147
             ||||||||||| | ||||||||||| |||||||||
Sbjct: 42786 tgagcctggatctcaagatgttcgccgccaagagc 42820
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>ref|XM_469887.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1047

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                       
Query: 218 gcaagatcgaggtgttccggcgcgagctccccctctgcgcacgcctcctcgctgacgtga 277
           ||||||||||| ||||| ||||||||||||| |||||||| ||||||||||| |||||||
Sbjct: 155 gcaagatcgagatgttcaggcgcgagctcccgctctgcgcccgcctcctcgccgacgtga 214

            
Query: 278 t 278
           |
Sbjct: 215 t 215



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 355 ggcgacaagagcaactggatgagcaccgcgcagctctgg 393
           ||||||||||  || ||||||||||||||||||||||||
Sbjct: 286 ggcgacaagacgaaatggatgagcaccgcgcagctctgg 324



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 109 gatttgagcctggatttgaagatgttcgcggc 140
           ||||||||||||||  ||||||||||||||||
Sbjct: 37  gatttgagcctggacctgaagatgttcgcggc 68
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>dbj|AK105625.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C11, full
           insert sequence
          Length = 1496

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                       
Query: 218 gcaagatcgaggtgttccggcgcgagctccccctctgcgcacgcctcctcgctgacgtga 277
           ||||||||||| ||||| ||||||||||||| |||||||| ||||||||||| |||||||
Sbjct: 295 gcaagatcgagatgttcaggcgcgagctcccgctctgcgcccgcctcctcgccgacgtga 354

            
Query: 278 t 278
           |
Sbjct: 355 t 355



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 355 ggcgacaagagcaactggatgagcaccgcgcagctctgg 393
           ||||||||||  || ||||||||||||||||||||||||
Sbjct: 426 ggcgacaagacgaaatggatgagcaccgcgcagctctgg 464



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 109 gatttgagcctggatttgaagatgttcgcggc 140
           ||||||||||||||  ||||||||||||||||
Sbjct: 177 gatttgagcctggacctgaagatgttcgcggc 208
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>gb|BT016414.1| Zea mays clone Contig247 mRNA sequence
          Length = 1385

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 102/123 (82%)
 Strand = Plus / Plus

                                                                       
Query: 166 gcgccggcggccgccatggacgactgtatccggaggctggaggaggagaagagcaagatc 225
           ||||||||| | | |||||||| ||| |||||  | || |||||||||  | ||||||||
Sbjct: 170 gcgccggcgccggacatggacgcctgcatccgccgcctcgaggaggagcggggcaagatc 229

                                                                       
Query: 226 gaggtgttccggcgcgagctccccctctgcgcacgcctcctcgctgacgtgattgatgtg 285
           ||| |||||  ||| ||||| || |||||||| ||||||||||| |||||||| ||||||
Sbjct: 230 gagatgttcaagcgggagctgccgctctgcgcgcgcctcctcgcagacgtgatcgatgtg 289

              
Query: 286 atg 288
           |||
Sbjct: 290 atg 292



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                         
Query: 358 gacaagagcaactggatgagcaccgcgcagctctggaccggcgatt 403
           |||||||||||  |||||||||| ||||||||||||||||| ||||
Sbjct: 341 gacaagagcaaggggatgagcacggcgcagctctggaccggagatt 386



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 91  gagatcggcatgggcgcagatttgagcctggat 123
           |||||||| |||||||| |||||||||||||||
Sbjct: 86  gagatcgggatgggcgccgatttgagcctggat 118
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                         
Query: 218      gcaagatcgaggtgttccggcgcgagctccccctctgcgcacgcctcctcgctgacg 274
                ||||||||||| ||||| ||||||||||||| |||||||| ||||||||||| ||||
Sbjct: 31340280 gcaagatcgagatgttcaggcgcgagctcccgctctgcgcccgcctcctcgccgacg 31340336



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 355      ggcgacaagagcaactggatgagcaccgcgcagctctgg 393
                ||||||||||  || ||||||||||||||||||||||||
Sbjct: 31340512 ggcgacaagacgaaatggatgagcaccgcgcagctctgg 31340550



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 109      gatttgagcctggatttgaagatgttcgcggc 140
                ||||||||||||||  ||||||||||||||||
Sbjct: 31340162 gatttgagcctggacctgaagatgttcgcggc 31340193
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>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete
              sequence
          Length = 159091

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                       
Query: 218    gcaagatcgaggtgttccggcgcgagctccccctctgcgcacgcctcctcgctgacg 274
              ||||||||||| ||||| ||||||||||||| |||||||| ||||||||||| ||||
Sbjct: 155520 gcaagatcgagatgttcaggcgcgagctcccgctctgcgcccgcctcctcgccgacg 155464



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                     
Query: 355    ggcgacaagagcaactggatgagcaccgcgcagctctgg 393
              ||||||||||  || ||||||||||||||||||||||||
Sbjct: 155288 ggcgacaagacgaaatggatgagcaccgcgcagctctgg 155250



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 109    gatttgagcctggatttgaagatgttcgcggc 140
              ||||||||||||||  ||||||||||||||||
Sbjct: 155638 gatttgagcctggacctgaagatgttcgcggc 155607
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                         
Query: 218      gcaagatcgaggtgttccggcgcgagctccccctctgcgcacgcctcctcgctgacg 274
                ||||||||||| ||||| ||||||||||||| |||||||| ||||||||||| ||||
Sbjct: 31430796 gcaagatcgagatgttcaggcgcgagctcccgctctgcgcccgcctcctcgccgacg 31430852



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 355      ggcgacaagagcaactggatgagcaccgcgcagctctgg 393
                ||||||||||  || ||||||||||||||||||||||||
Sbjct: 31431028 ggcgacaagacgaaatggatgagcaccgcgcagctctgg 31431066



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 109      gatttgagcctggatttgaagatgttcgcggc 140
                ||||||||||||||  ||||||||||||||||
Sbjct: 31430678 gatttgagcctggacctgaagatgttcgcggc 31430709
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>gb|AY023290.1| Oryza sativa microsatellite MRG5615 containing (GGC)X9, closest to
           marker G148, genomic sequence
          Length = 227

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                    
Query: 193 atccggaggctggaggaggagaagagcaagatcgaggtgttccggcgcgagctcccc 249
           |||||||| || ||||  ||||||  |||||| ||||||||||| ||||||||||||
Sbjct: 144 atccggagcctcgaggccgagaaggccaagatggaggtgttccgccgcgagctcccc 200
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 193      atccggaggctggaggaggagaagagcaagatcgaggtgttccggcgcgagctcccc 249
                |||||||| || ||||  ||||||  |||||| ||||||||||| ||||||||||||
Sbjct: 24508908 atccggagcctcgaggccgagaaggccaagatggaggtgttccgccgcgagctcccc 24508964
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 193      atccggaggctggaggaggagaagagcaagatcgaggtgttccggcgcgagctcccc 249
                |||||||| || ||||  ||||||  |||||| ||||||||||| ||||||||||||
Sbjct: 24437114 atccggagcctcgaggccgagaaggccaagatggaggtgttccgccgcgagctcccc 24437170
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>emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120071

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 193   atccggaggctggaggaggagaagagcaagatcgaggtgttccggcgcgagctcccc 249
             |||||||| || ||||  ||||||  |||||| ||||||||||| ||||||||||||
Sbjct: 79939 atccggagcctcgaggccgagaaggccaagatggaggtgttccgccgcgagctcccc 79995
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>ref|XM_466597.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1136

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 197 ggaggctggaggaggagaagag 218
           ||||||||||||||||||||||
Sbjct: 531 ggaggctggaggaggagaagag 552
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>ref|XM_466596.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1467

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 197 ggaggctggaggaggagaagag 218
           ||||||||||||||||||||||
Sbjct: 859 ggaggctggaggaggagaagag 880
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>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence
          Length = 103167

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 369   ctggatgagcaccgcgcagctctgga 394
             |||||||||| |||||||||||||||
Sbjct: 60469 ctggatgagctccgcgcagctctgga 60494
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 197      ggaggctggaggaggagaagag 218
                ||||||||||||||||||||||
Sbjct: 23599359 ggaggctggaggaggagaagag 23599338



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 204      ggaggaggagaagagcaaga 223
                ||||||||||||||||||||
Sbjct: 20683454 ggaggaggagaagagcaaga 20683473
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>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1791_B03
          Length = 166214

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 197    ggaggctggaggaggagaagag 218
              ||||||||||||||||||||||
Sbjct: 165042 ggaggctggaggaggagaagag 165021
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>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1669_F01
          Length = 140019

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 197   ggaggctggaggaggagaagag 218
             ||||||||||||||||||||||
Sbjct: 40459 ggaggctggaggaggagaagag 40438
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>dbj|AK073602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052I23, full
           insert sequence
          Length = 1136

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 197 ggaggctggaggaggagaagag 218
           ||||||||||||||||||||||
Sbjct: 530 ggaggctggaggaggagaagag 551
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>emb|AL391833.10| Human DNA sequence from clone RP11-307K1 on chromosome 6, complete
             sequence
          Length = 201512

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 9     tttctcttgcaacaagtcagta 30
             ||||||||||||||||||||||
Sbjct: 89845 tttctcttgcaacaagtcagta 89824
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>dbj|AK064340.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H03, full
           insert sequence
          Length = 1467

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 197 ggaggctggaggaggagaagag 218
           ||||||||||||||||||||||
Sbjct: 859 ggaggctggaggaggagaagag 880
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 507     ccggtgcccccggcgttcgcg 527
               |||||||||||||||||||||
Sbjct: 2210042 ccggtgcccccggcgttcgcg 2210022
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>dbj|AB017043.1| Rattus norvegicus gene for hepatocyte nuclear factor 3 gamma, partial
            cds
          Length = 3914

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 144  gagcctggggcgggccaggga 164
            |||||||||||||||||||||
Sbjct: 2734 gagcctggggcgggccaggga 2754
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>ref|XM_863518.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase
           II 23 kDa polypeptide (RPB25) (RPB5) (RPABC1),
           transcript variant 2 (LOC611859), mRNA
          Length = 767

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 cggcggccgccatggacgac 189
           ||||||||||||||||||||
Sbjct: 18  cggcggccgccatggacgac 37
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>ref|XM_849548.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase
           II 23 kDa polypeptide (RPB25) (RPB5) (RPABC1),
           transcript variant 1 (LOC611859), mRNA
          Length = 655

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 cggcggccgccatggacgac 189
           ||||||||||||||||||||
Sbjct: 18  cggcggccgccatggacgac 37
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>ref|XM_863514.1| PREDICTED: Canis familiaris similar to Cdc42 binding protein kinase
            beta, transcript variant 4 (LOC490868), mRNA
          Length = 5433

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 193  atccggaggctggaggaggagaag 216
            ||||||||||||||| ||||||||
Sbjct: 1631 atccggaggctggagcaggagaag 1654
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>ref|XM_863513.1| PREDICTED: Canis familiaris similar to Cdc42 binding protein kinase
            beta, transcript variant 3 (LOC490868), mRNA
          Length = 5319

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 193  atccggaggctggaggaggagaag 216
            ||||||||||||||| ||||||||
Sbjct: 1631 atccggaggctggagcaggagaag 1654
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>ref|XM_863511.1| PREDICTED: Canis familiaris similar to Cdc42 binding protein kinase
            beta, transcript variant 2 (LOC490868), mRNA
          Length = 5604

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 193  atccggaggctggaggaggagaag 216
            ||||||||||||||| ||||||||
Sbjct: 1631 atccggaggctggagcaggagaag 1654
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>ref|XM_547990.2| PREDICTED: Canis familiaris similar to Cdc42 binding protein kinase
            beta, transcript variant 1 (LOC490868), mRNA
          Length = 5323

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 193  atccggaggctggaggaggagaag 216
            ||||||||||||||| ||||||||
Sbjct: 1631 atccggaggctggagcaggagaag 1654
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>emb|BX004827.18| Human DNA sequence from clone RP13-391G2 on chromosome X Contains the
             SHOX gene for short stature homeobox and seven CpG
             islands, complete sequence
          Length = 119555

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   ggaggctggaggaggagaag 216
             ||||||||||||||||||||
Sbjct: 35627 ggaggctggaggaggagaag 35646
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>emb|AL732314.18| Human DNA sequence from clone RP13-465B17 on chromosome X Contains the 5'
              end of the gene for protein phosphatase 2A 48 kDa
              regulatory subunit (PR48), a fatty acid binding protein 5
              (psoriasis-associated) (FABP5) pseudogene, a pseudogene
              similar to part of keratin 18 (KRT18) and nine CpG islands,
              complete sequence
          Length = 218723

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    ggaggctggaggaggagaag 216
              ||||||||||||||||||||
Sbjct: 201152 ggaggctggaggaggagaag 201171
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>emb|AL513284.12| Human DNA sequence from clone RP11-518D3 on chromosome 1 Contains the
             3' end of a novel gene (FLJ42034, FLJ38762), the gene for
             a putative NFkB activating protein 373, a C-terminal
             binding protein 2 (CTBP2) pseudogene, a ribosomal protein
             S7 (RPS7) pseudogene and a CpG island, complete sequence
          Length = 169972

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 200   ggctggaggaggagaagagcaaga 223
             ||||||||| ||||||||||||||
Sbjct: 53007 ggctggaggtggagaagagcaaga 53030
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>emb|AL357932.15| Human DNA sequence from clone RP11-435N12 on chromosome 1, complete
              sequence
          Length = 179782

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    ggaggaggagaagagcaaga 223
              ||||||||||||||||||||
Sbjct: 100945 ggaggaggagaagagcaaga 100926
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>gb|AC023742.4| Drosophila melanogaster X BAC RP98-43C24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 172203

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    aggctggaggaggagaagag 218
              ||||||||||||||||||||
Sbjct: 126061 aggctggaggaggagaagag 126042
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 233      tccggcgcgagctccccctctgcg 256
                ||||||||||||||| ||||||||
Sbjct: 15273502 tccggcgcgagctcctcctctgcg 15273479



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 233      tccggcgcgagctccccctctgcg 256
                ||||||||||||||| ||||||||
Sbjct: 14651752 tccggcgcgagctcctcctctgcg 14651729
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 516      ccggcgttcgcgccgccgag 535
                ||||||||||||||||||||
Sbjct: 24525285 ccggcgttcgcgccgccgag 24525266
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 431      agcaggatgagaggaggagg 450
                ||||||||||||||||||||
Sbjct: 11132091 agcaggatgagaggaggagg 11132110
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>gb|BT006013.1| Drosophila melanogaster LD11736 full insert cDNA
          Length = 4440

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aggctggaggaggagaagag 218
           ||||||||||||||||||||
Sbjct: 901 aggctggaggaggagaagag 920
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>gb|AC007405.6| Homo sapiens BAC clone RP11-570C16 from 2, complete sequence
          Length = 193212

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    agcctggggcgggccaggga 164
              ||||||||||||||||||||
Sbjct: 173573 agcctggggcgggccaggga 173554
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>ref|NM_174457.2| Bos taurus seryl-tRNA synthetase 2 (SARS2), mRNA
          Length = 1910

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 193 atccggaggctggaggaggagaag 216
           |||||||| |||||||||||||||
Sbjct: 319 atccggagcctggaggaggagaag 342
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>dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1146F03
          Length = 137047

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   agcaggatgagaggaggagg 450
             ||||||||||||||||||||
Sbjct: 23884 agcaggatgagaggaggagg 23903
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>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0040H10
          Length = 173301

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 516  ccggcgttcgcgccgccgag 535
            ||||||||||||||||||||
Sbjct: 8478 ccggcgttcgcgccgccgag 8459
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>dbj|AP003609.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0012B02
          Length = 149807

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 516    ccggcgttcgcgccgccgag 535
              ||||||||||||||||||||
Sbjct: 136758 ccggcgttcgcgccgccgag 136739
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>dbj|AP004775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0451A10
          Length = 137046

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   ggaggaggagaagagcaaga 223
             ||||||||||||||||||||
Sbjct: 34560 ggaggaggagaagagcaaga 34579
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>dbj|AP005469.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0040I22
          Length = 134273

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   ggaggaggagaagagcaaga 223
             ||||||||||||||||||||
Sbjct: 80309 ggaggaggagaagagcaaga 80328
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>gb|BT021900.1| Bos taurus seryl-tRNA synthetase 2 (SARS2), mRNA, complete cds
          Length = 1901

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 193 atccggaggctggaggaggagaag 216
           |||||||| |||||||||||||||
Sbjct: 320 atccggagcctggaggaggagaag 343
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>gb|BT021873.1| Bos taurus seryl-tRNA synthetase 2 (SARS2), mRNA, complete cds
          Length = 1881

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 193 atccggaggctggaggaggagaag 216
           |||||||| |||||||||||||||
Sbjct: 307 atccggagcctggaggaggagaag 330
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>gb|BT021603.1| Bos taurus seryl-tRNA synthetase 2 (SARS2), mRNA, complete cds
          Length = 1906

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 193 atccggaggctggaggaggagaag 216
           |||||||| |||||||||||||||
Sbjct: 325 atccggagcctggaggaggagaag 348
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>gb|BT021565.1| Bos taurus seryl-tRNA synthetase 2 (SARS2), mRNA, complete cds
          Length = 1895

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 193 atccggaggctggaggaggagaag 216
           |||||||| |||||||||||||||
Sbjct: 314 atccggagcctggaggaggagaag 337
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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 415    gacgatgcttccgagaagcaggatgaga 442
              |||||||||||  |||||||||||||||
Sbjct: 716529 gacgatgcttcgaagaagcaggatgaga 716556
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>gb|AE003431.5| Drosophila melanogaster chromosome X, section 15 of 74 of the complete
             sequence
          Length = 310993

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   aggctggaggaggagaagag 218
             ||||||||||||||||||||
Sbjct: 83129 aggctggaggaggagaagag 83110
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>dbj|AP002881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0035H10
          Length = 109475

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   agcaggatgagaggaggagg 450
             ||||||||||||||||||||
Sbjct: 30824 agcaggatgagaggaggagg 30843
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>emb|AL606599.3|OSJN00034 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0050F15,
              complete sequence
          Length = 150562

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 233    tccggcgcgagctccccctctgcg 256
              ||||||||||||||| ||||||||
Sbjct: 119889 tccggcgcgagctcctcctctgcg 119866
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>dbj|AB029947.1| Bos taurus SerRSmt mRNA for mitochondrial seryl-tRNA synthetase,
           complete cds
          Length = 1910

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 193 atccggaggctggaggaggagaag 216
           |||||||| |||||||||||||||
Sbjct: 319 atccggagcctggaggaggagaag 342


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,568,212
Number of Sequences: 3902068
Number of extensions: 3568212
Number of successful extensions: 91303
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90706
Number of HSP's gapped (non-prelim): 597
length of query: 544
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 521
effective length of database: 17,143,297,704
effective search space: 8931658103784
effective search space used: 8931658103784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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