ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdj21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 196 5e-47
2dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic D... 196 5e-47
3dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic D... 196 5e-47
4dbj|AK065374.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 5e-47
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 147 5e-32
6emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4,... 147 5e-32
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
8dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
9dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
10tpe|BN000542.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 96 1e-16
11ref|XM_481332.1| Oryza sativa (japonica cultivar-group), mRNA 88 4e-14
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
13dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
14dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
15ref|NM_191315.1| Oryza sativa (japonica cultivar-group), predic... 48 0.031
16dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.031
17dbj|AK100202.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.031
18dbj|AK069231.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.031
19dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.031
20gb|AC119410.20| Medicago truncatula clone mth2-13n10, complete s... 44 0.49
21gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 40 7.6
22gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 7.6
23gb|AC126276.3| Mus musculus BAC clone RP23-113J19 from 10, compl... 40 7.6
24gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome 40 7.6
25gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 7.6
26emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome 40 7.6
27ref|XM_967312.1| PREDICTED: Tribolium castaneum similar to GRIP ... 40 7.6
28ref|XM_966724.1| PREDICTED: Tribolium castaneum similar to CG109... 40 7.6
29emb|BX927386.11| Zebrafish DNA sequence from clone CH211-54F10 i... 40 7.6
30gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome... 40 7.6
31gb|AC026439.4| Homo sapiens chromosome 5 clone CTD-2267H19, comp... 40 7.6
32gb|AC008807.10| Homo sapiens chromosome 5 clone CTD-2087C24, com... 40 7.6
33gb|AC079794.6| Homo sapiens BAC clone RP11-588F18 from 4, comple... 40 7.6
34dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.6
35dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
36dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
37dbj|AK110479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
38gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 40 7.6
39emb|AL844189.5| Mouse DNA sequence from clone RP23-167P8 on chro... 40 7.6 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  196 bits (99), Expect = 5e-47
 Identities = 216/255 (84%)
 Strand = Plus / Minus

                                                                            
Query: 15       cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 74
                |||||| ||||| |||||||| |||||||||||||||  | |||| ||||||||| ||||
Sbjct: 20143214 cttcgacctgtcggggctgttcgaggagcgcggcgagaggatgcgcttcgtgtccggcgc 20143155

                                                                            
Query: 75       gccggtgaacaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggc 134
                |||||||  |  ||| ||| |||||||| |||||||||| |||  ||| |||||||||||
Sbjct: 20143154 gccggtggccgacattatcgccaagctgcaggagatcgccgggatggtgagcttcacggc 20143095

                                                                            
Query: 135      gcgcaccaaggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgct 194
                ||| |||||||| ||||| |||||| ||||||||||  | || ||||| ||||| |||||
Sbjct: 20143094 gcggaccaaggactgccaggtgagcatcgaggcgacgcggaacgggcagaagggcgcgct 20143035

                                                                            
Query: 195      ggccatatccaccaagatattccagctcacgccggagctcgtcatggtccaggtatgcaa 254
                 ||||| ||| ||||| | ||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 20143034 cgccatctccgccaaggtgttcgagctcacgcgggagctcgtcatggtccaggtgtgcaa 20142975

                               
Query: 255      gaaagccggagacac 269
                ||| ||||| |||||
Sbjct: 20142974 gaaggccggcgacac 20142960



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 374      gaaattttagagaatttatt 393
                ||||||||||||||||||||
Sbjct: 28829834 gaaattttagagaatttatt 28829815
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>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0007G12
          Length = 111819

 Score =  196 bits (99), Expect = 5e-47
 Identities = 216/255 (84%)
 Strand = Plus / Minus

                                                                        
Query: 15   cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 74
            |||||| ||||| |||||||| |||||||||||||||  | |||| ||||||||| ||||
Sbjct: 9214 cttcgacctgtcggggctgttcgaggagcgcggcgagaggatgcgcttcgtgtccggcgc 9155

                                                                        
Query: 75   gccggtgaacaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggc 134
            |||||||  |  ||| ||| |||||||| |||||||||| |||  ||| |||||||||||
Sbjct: 9154 gccggtggccgacattatcgccaagctgcaggagatcgccgggatggtgagcttcacggc 9095

                                                                        
Query: 135  gcgcaccaaggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgct 194
            ||| |||||||| ||||| |||||| ||||||||||  | || ||||| ||||| |||||
Sbjct: 9094 gcggaccaaggactgccaggtgagcatcgaggcgacgcggaacgggcagaagggcgcgct 9035

                                                                        
Query: 195  ggccatatccaccaagatattccagctcacgccggagctcgtcatggtccaggtatgcaa 254
             ||||| ||| ||||| | ||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 9034 cgccatctccgccaaggtgttcgagctcacgcgggagctcgtcatggtccaggtgtgcaa 8975

                           
Query: 255  gaaagccggagacac 269
            ||| ||||| |||||
Sbjct: 8974 gaaggccggcgacac 8960
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>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1068H08
          Length = 152794

 Score =  196 bits (99), Expect = 5e-47
 Identities = 216/255 (84%)
 Strand = Plus / Minus

                                                                          
Query: 15     cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 74
              |||||| ||||| |||||||| |||||||||||||||  | |||| ||||||||| ||||
Sbjct: 131488 cttcgacctgtcggggctgttcgaggagcgcggcgagaggatgcgcttcgtgtccggcgc 131429

                                                                          
Query: 75     gccggtgaacaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggc 134
              |||||||  |  ||| ||| |||||||| |||||||||| |||  ||| |||||||||||
Sbjct: 131428 gccggtggccgacattatcgccaagctgcaggagatcgccgggatggtgagcttcacggc 131369

                                                                          
Query: 135    gcgcaccaaggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgct 194
              ||| |||||||| ||||| |||||| ||||||||||  | || ||||| ||||| |||||
Sbjct: 131368 gcggaccaaggactgccaggtgagcatcgaggcgacgcggaacgggcagaagggcgcgct 131309

                                                                          
Query: 195    ggccatatccaccaagatattccagctcacgccggagctcgtcatggtccaggtatgcaa 254
               ||||| ||| ||||| | ||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 131308 cgccatctccgccaaggtgttcgagctcacgcgggagctcgtcatggtccaggtgtgcaa 131249

                             
Query: 255    gaaagccggagacac 269
              ||| ||||| |||||
Sbjct: 131248 gaaggccggcgacac 131234
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>dbj|AK065374.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003B24, full
            insert sequence
          Length = 1884

 Score =  196 bits (99), Expect = 5e-47
 Identities = 216/255 (84%)
 Strand = Plus / Plus

                                                                        
Query: 15   cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 74
            |||||| ||||| |||||||| |||||||||||||||  | |||| ||||||||| ||||
Sbjct: 1238 cttcgacctgtcggggctgttcgaggagcgcggcgagaggatgcgcttcgtgtccggcgc 1297

                                                                        
Query: 75   gccggtgaacaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggc 134
            |||||||  |  ||| ||| |||||||| |||||||||| |||  ||| |||||||||||
Sbjct: 1298 gccggtggccgacattatcgccaagctgcaggagatcgccgggatggtgagcttcacggc 1357

                                                                        
Query: 135  gcgcaccaaggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgct 194
            ||| |||||||| ||||| |||||| ||||||||||  | || ||||| ||||| |||||
Sbjct: 1358 gcggaccaaggactgccaggtgagcatcgaggcgacgcggaacgggcagaagggcgcgct 1417

                                                                        
Query: 195  ggccatatccaccaagatattccagctcacgccggagctcgtcatggtccaggtatgcaa 254
             ||||| ||| ||||| | ||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 1418 cgccatctccgccaaggtgttcgagctcacgcgggagctcgtcatggtccaggtgtgcaa 1477

                           
Query: 255  gaaagccggagacac 269
            ||| ||||| |||||
Sbjct: 1478 gaaggccggcgacac 1492
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  147 bits (74), Expect = 5e-32
 Identities = 194/234 (82%)
 Strand = Plus / Minus

                                                                           
Query: 15      cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 74
               |||||| ||||||||||||||  ||||||||||||||  | |||| ||||||||| ||||
Sbjct: 5628099 cttcgacctgtccgggctgttccaggagcgcggcgagaggatgcgcttcgtgtccggcgc 5628040

                                                                           
Query: 75      gccggtgaacaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggc 134
               | |||||  |  ||||||| ||||||| ||||||||||| ||   ||| ||||||| |||
Sbjct: 5628039 gtcggtggccgacatcatcgccaagctagaggagatcgccggcatggtgagcttcatggc 5627980

                                                                           
Query: 135     gcgcaccaaggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgct 194
               ||| |||||||| ||||| |||||| ||||||||||    || ||||| ||||| |||||
Sbjct: 5627979 gcggaccaaggactgccaggtgagcatcgaggcgacgcagaacgggcagaagggcgcgct 5627920

                                                                     
Query: 195     ggccatatccaccaagatattccagctcacgccggagctcgtcatggtccaggt 248
                ||||| ||| ||||| | ||| ||||||||  |||||||||||||||||||||
Sbjct: 5627919 cgccatctccgccaaggtgttcgagctcacgtgggagctcgtcatggtccaggt 5627866
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>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01,
             complete sequence
          Length = 162227

 Score =  147 bits (74), Expect = 5e-32
 Identities = 194/234 (82%)
 Strand = Plus / Minus

                                                                         
Query: 15    cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 74
             |||||| ||||||||||||||  ||||||||||||||  | |||| ||||||||| ||||
Sbjct: 85306 cttcgacctgtccgggctgttccaggagcgcggcgagaggatgcgcttcgtgtccggcgc 85247

                                                                         
Query: 75    gccggtgaacaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggc 134
             | |||||  |  ||||||| ||||||| ||||||||||| ||   ||| ||||||| |||
Sbjct: 85246 gtcggtggccgacatcatcgccaagctagaggagatcgccggcatggtgagcttcatggc 85187

                                                                         
Query: 135   gcgcaccaaggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgct 194
             ||| |||||||| ||||| |||||| ||||||||||    || ||||| ||||| |||||
Sbjct: 85186 gcggaccaaggactgccaggtgagcatcgaggcgacgcagaacgggcagaagggcgcgct 85127

                                                                   
Query: 195   ggccatatccaccaagatattccagctcacgccggagctcgtcatggtccaggt 248
              ||||| ||| ||||| | ||| ||||||||  |||||||||||||||||||||
Sbjct: 85126 cgccatctccgccaaggtgttcgagctcacgtgggagctcgtcatggtccaggt 85073
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 180/224 (80%)
 Strand = Plus / Minus

                                                                            
Query: 23       tgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgcgccggtga 82
                |||||||||||||  ||||||| ||||||  | |||| ||||||||| ||||| ||||| 
Sbjct: 12496295 tgtccgggctgttccaggagcgtggcgagaggatgcgcttcgtgtccggcgcgtcggtgg 12496236

                                                                            
Query: 83       acaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggcgcgcacca 142
                 |  ||||||| ||||||| ||||||||||| ||   ||| ||||||| |||| | ||||
Sbjct: 12496235 ccgacatcatcgccaagctagaggagatcgccggcatggtgagcttcatggcgtggacca 12496176

                                                                            
Query: 143      aggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatat 202
                |||| ||||| |||||| ||||||||||  | || || || ||| | ||||| ||||| |
Sbjct: 12496175 aggactgccaggtgagcatcgaggcgacgcggaacggacagaagagcgcgctcgccatct 12496116

                                                            
Query: 203      ccaccaagatattccagctcacgccggagctcgtcatggtccag 246
                || ||||| | ||| |||||||    ||||||||||||||||||
Sbjct: 12496115 ccgccaaggtgttcgagctcacatgtgagctcgtcatggtccag 12496072



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 92       tctccaagctggaggagatcgcgg 115
                ||||||||||||||||||||||||
Sbjct: 31932206 tctccaagctggaggagatcgcgg 31932183
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>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0537A05
          Length = 152396

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 180/224 (80%)
 Strand = Plus / Minus

                                                                        
Query: 23   tgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgcgccggtga 82
            |||||||||||||  ||||||| ||||||  | |||| ||||||||| ||||| ||||| 
Sbjct: 7905 tgtccgggctgttccaggagcgtggcgagaggatgcgcttcgtgtccggcgcgtcggtgg 7846

                                                                        
Query: 83   acaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggcgcgcacca 142
             |  ||||||| ||||||| ||||||||||| ||   ||| ||||||| |||| | ||||
Sbjct: 7845 ccgacatcatcgccaagctagaggagatcgccggcatggtgagcttcatggcgtggacca 7786

                                                                        
Query: 143  aggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatat 202
            |||| ||||| |||||| ||||||||||  | || || || ||| | ||||| ||||| |
Sbjct: 7785 aggactgccaggtgagcatcgaggcgacgcggaacggacagaagagcgcgctcgccatct 7726

                                                        
Query: 203  ccaccaagatattccagctcacgccggagctcgtcatggtccag 246
            || ||||| | ||| |||||||    ||||||||||||||||||
Sbjct: 7725 ccgccaaggtgttcgagctcacatgtgagctcgtcatggtccag 7682
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>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1135C02
          Length = 152306

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 180/224 (80%)
 Strand = Plus / Minus

                                                                         
Query: 23    tgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgcgccggtga 82
             |||||||||||||  ||||||| ||||||  | |||| ||||||||| ||||| ||||| 
Sbjct: 81910 tgtccgggctgttccaggagcgtggcgagaggatgcgcttcgtgtccggcgcgtcggtgg 81851

                                                                         
Query: 83    acaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggcgcgcacca 142
              |  ||||||| ||||||| ||||||||||| ||   ||| ||||||| |||| | ||||
Sbjct: 81850 ccgacatcatcgccaagctagaggagatcgccggcatggtgagcttcatggcgtggacca 81791

                                                                         
Query: 143   aggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatat 202
             |||| ||||| |||||| ||||||||||  | || || || ||| | ||||| ||||| |
Sbjct: 81790 aggactgccaggtgagcatcgaggcgacgcggaacggacagaagagcgcgctcgccatct 81731

                                                         
Query: 203   ccaccaagatattccagctcacgccggagctcgtcatggtccag 246
             || ||||| | ||| |||||||    ||||||||||||||||||
Sbjct: 81730 ccgccaaggtgttcgagctcacatgtgagctcgtcatggtccag 81687
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>tpe|BN000542.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx13 gene for
            class III peroxidase 13 precursor, exons 1-3
          Length = 9315

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 180/224 (80%)
 Strand = Plus / Minus

                                                                        
Query: 23   tgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgcgccggtga 82
            |||||||||||||  ||||||| ||||||  | |||| ||||||||| ||||| ||||| 
Sbjct: 3794 tgtccgggctgttccaggagcgtggcgagaggatgcgcttcgtgtccggcgcgtcggtgg 3735

                                                                        
Query: 83   acaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggcgcgcacca 142
             |  ||||||| ||||||| ||||||||||| ||   ||| ||||||| |||| | ||||
Sbjct: 3734 ccgacatcatcgccaagctagaggagatcgccggcatggtgagcttcatggcgtggacca 3675

                                                                        
Query: 143  aggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatat 202
            |||| ||||| |||||| ||||||||||  | || || || ||| | ||||| ||||| |
Sbjct: 3674 aggactgccaggtgagcatcgaggcgacgcggaacggacagaagagcgcgctcgccatct 3615

                                                        
Query: 203  ccaccaagatattccagctcacgccggagctcgtcatggtccag 246
            || ||||| | ||| |||||||    ||||||||||||||||||
Sbjct: 3614 ccgccaaggtgttcgagctcacatgtgagctcgtcatggtccag 3571
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>ref|XM_481332.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 768

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                       
Query: 154 gtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatatccaccaagata 213
           |||||| ||||||||||  | || ||||| ||||| || || ||||| ||| ||||| | 
Sbjct: 514 gtgagcatcgaggcgacgcggaacgggcataagggcgcactcgccatctcctccaaggtg 573

                                                                   
Query: 214 ttccagctcacgccggagctcgtcatggtccaggtatgcaagaaagccggagacac 269
           ||| ||||||||| ||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 574 ttcgagctcacgcgggagctcgtcatggtccaggtgtgcaagaaggccggcgacac 629



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 87  catcatctccaagctggaggagatcgc 113
           ||||||| |||||||||||||||||||
Sbjct: 480 catcatcgccaagctggaggagatcgc 506
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                            
Query: 154      gtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatatccaccaagata 213
                |||||| ||||||||||  | || ||||| ||||| || || ||||| ||| ||||| | 
Sbjct: 11596150 gtgagcatcgaggcgacgcggaacgggcataagggcgcactcgccatctcctccaaggtg 11596209

                                                                        
Query: 214      ttccagctcacgccggagctcgtcatggtccaggtatgcaagaaagccggagacac 269
                ||| ||||||||| ||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 11596210 ttcgagctcacgcgggagctcgtcatggtccaggtgtgcaagaaggccggcgacac 11596265



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                            
Query: 15       cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 74
                |||||| ||||| | ||||||||||||||||||||||  | |||  ||| ||||| ||||
Sbjct: 11596044 cttcgacctgtctgagctgtttgaggagcgcggcgagaggatgcacttcatgtccggcgc 11596103

                                                       
Query: 75       gccggtgaacaccatcatctccaagctggaggagatcgc 113
                || ||||  |  ||||||| |||||||||||||||||||
Sbjct: 11596104 gctggtggccgacatcatcgccaagctggaggagatcgc 11596142
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>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1034_C08
          Length = 154441

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                          
Query: 154    gtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatatccaccaagata 213
              |||||| ||||||||||  | || ||||| ||||| || || ||||| ||| ||||| | 
Sbjct: 150284 gtgagcatcgaggcgacgcggaacgggcataagggcgcactcgccatctcctccaaggtg 150343

                                                                      
Query: 214    ttccagctcacgccggagctcgtcatggtccaggtatgcaagaaagccggagacac 269
              ||| ||||||||| ||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 150344 ttcgagctcacgcgggagctcgtcatggtccaggtgtgcaagaaggccggcgacac 150399



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                          
Query: 15     cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 74
              |||||| ||||| | ||||||||||||||||||||||  | |||  ||| ||||| ||||
Sbjct: 150178 cttcgacctgtctgagctgtttgaggagcgcggcgagaggatgcacttcatgtccggcgc 150237

                                                     
Query: 75     gccggtgaacaccatcatctccaagctggaggagatcgc 113
              || ||||  |  ||||||| |||||||||||||||||||
Sbjct: 150238 gctggtggccgacatcatcgccaagctggaggagatcgc 150276
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>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0467G09
          Length = 158204

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                         
Query: 154   gtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatatccaccaagata 213
             |||||| ||||||||||  | || ||||| ||||| || || ||||| ||| ||||| | 
Sbjct: 56421 gtgagcatcgaggcgacgcggaacgggcataagggcgcactcgccatctcctccaaggtg 56480

                                                                     
Query: 214   ttccagctcacgccggagctcgtcatggtccaggtatgcaagaaagccggagacac 269
             ||| ||||||||| ||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 56481 ttcgagctcacgcgggagctcgtcatggtccaggtgtgcaagaaggccggcgacac 56536



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                         
Query: 15    cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 74
             |||||| ||||| | ||||||||||||||||||||||  | |||  ||| ||||| ||||
Sbjct: 56315 cttcgacctgtctgagctgtttgaggagcgcggcgagaggatgcacttcatgtccggcgc 56374

                                                    
Query: 75    gccggtgaacaccatcatctccaagctggaggagatcgc 113
             || ||||  |  ||||||| |||||||||||||||||||
Sbjct: 56375 gctggtggccgacatcatcgccaagctggaggagatcgc 56413
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>ref|NM_191315.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1425

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 92   tctccaagctggaggagatcgcgg 115
            ||||||||||||||||||||||||
Sbjct: 1112 tctccaagctggaggagatcgcgg 1135
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>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1131G08
          Length = 158241

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 92     tctccaagctggaggagatcgcgg 115
              ||||||||||||||||||||||||
Sbjct: 118284 tctccaagctggaggagatcgcgg 118261
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>dbj|AK100202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040M01, full
            insert sequence
          Length = 1628

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 92   tctccaagctggaggagatcgcgg 115
            ||||||||||||||||||||||||
Sbjct: 1238 tctccaagctggaggagatcgcgg 1261
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>dbj|AK069231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013G02, full
            insert sequence
          Length = 1690

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 92   tctccaagctggaggagatcgcgg 115
            ||||||||||||||||||||||||
Sbjct: 1230 tctccaagctggaggagatcgcgg 1253
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>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0460E08
          Length = 170021

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 92    tctccaagctggaggagatcgcgg 115
             ||||||||||||||||||||||||
Sbjct: 28933 tctccaagctggaggagatcgcgg 28910
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>gb|AC119410.20| Medicago truncatula clone mth2-13n10, complete sequence
          Length = 108232

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 389   ttattgtggggtgaaaagcagcaggg 414
             ||||||||||||||||||||| ||||
Sbjct: 39753 ttattgtggggtgaaaagcagtaggg 39728
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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     gagcgcggcgagcagttgcg 59
              ||||||||||||||||||||
Sbjct: 776868 gagcgcggcgagcagttgcg 776887
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 72      cgcgccggtgaacaccatca 91
               ||||||||||||||||||||
Sbjct: 1456482 cgcgccggtgaacaccatca 1456463
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>gb|AC126276.3| Mus musculus BAC clone RP23-113J19 from 10, complete sequence
          Length = 195021

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   cttgaaattttagagaattt 390
             ||||||||||||||||||||
Sbjct: 58606 cttgaaattttagagaattt 58625
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>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome
          Length = 241087

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   gccaagtgagcttcgaggcg 168
             ||||||||||||||||||||
Sbjct: 53663 gccaagtgagcttcgaggcg 53644
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 322     ctcgtggatggcctgcctga 341
               ||||||||||||||||||||
Sbjct: 5067950 ctcgtggatggcctgcctga 5067969
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>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    aaattttagagaatttattg 394
              ||||||||||||||||||||
Sbjct: 722790 aaattttagagaatttattg 722771
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>ref|XM_967312.1| PREDICTED: Tribolium castaneum similar to GRIP and coiled-coil
            domain-containing 2 (LOC661131), mRNA
          Length = 3972

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   tcatctccaagctggaggag 108
            ||||||||||||||||||||
Sbjct: 1310 tcatctccaagctggaggag 1329
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>ref|XM_966724.1| PREDICTED: Tribolium castaneum similar to CG10958-PA (LOC660497),
           mRNA
          Length = 2451

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 214 ttccagctcacgccggagctcgtc 237
           ||||||||||||| ||||||||||
Sbjct: 885 ttccagctcacgctggagctcgtc 862
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>emb|BX927386.11| Zebrafish DNA sequence from clone CH211-54F10 in linkage group 1,
             complete sequence
          Length = 80968

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    acaccatcatctccaagctg 102
             ||||||||||||||||||||
Sbjct: 33768 acaccatcatctccaagctg 33787
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>gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome 10, complete sequence
          Length = 204309

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   cttgaaattttagagaattt 390
             ||||||||||||||||||||
Sbjct: 21886 cttgaaattttagagaattt 21867
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>gb|AC026439.4| Homo sapiens chromosome 5 clone CTD-2267H19, complete sequence
          Length = 105081

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 372  ttgaaattttagagaattta 391
            ||||||||||||||||||||
Sbjct: 4865 ttgaaattttagagaattta 4884
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>gb|AC008807.10| Homo sapiens chromosome 5 clone CTD-2087C24, complete sequence
          Length = 126189

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   ttgaaattttagagaattta 391
             ||||||||||||||||||||
Sbjct: 44204 ttgaaattttagagaattta 44185
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>gb|AC079794.6| Homo sapiens BAC clone RP11-588F18 from 4, complete sequence
          Length = 49580

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 327   ggatggcctgcctgaggatggcct 350
             |||||||||||| |||||||||||
Sbjct: 33736 ggatggcctgccggaggatggcct 33759



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 327   ggatggcctgcctgaggatggcct 350
             |||||||||||| |||||||||||
Sbjct: 33706 ggatggcctgccggaggatggcct 33729



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 327   ggatggcctgcctgaggatggcct 350
             |||||||||||| |||||||||||
Sbjct: 33691 ggatggcctgccggaggatggcct 33714
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   cagctcacgccggagctcgt 236
             ||||||||||||||||||||
Sbjct: 76712 cagctcacgccggagctcgt 76693
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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0028E05
          Length = 157631

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 374    gaaattttagagaatttatt 393
              ||||||||||||||||||||
Sbjct: 137609 gaaattttagagaatttatt 137590
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>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0545E05
          Length = 163229

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 374  gaaattttagagaatttatt 393
            ||||||||||||||||||||
Sbjct: 4920 gaaattttagagaatttatt 4901
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>dbj|AK110479.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-167-A03, full
            insert sequence
          Length = 3296

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   tgaggagcgcggcgagcagt 55
            ||||||||||||||||||||
Sbjct: 1330 tgaggagcgcggcgagcagt 1349
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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 239     tggtccaggtatgcaagaaa 258
               ||||||||||||||||||||
Sbjct: 2890592 tggtccaggtatgcaagaaa 2890611
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>emb|AL844189.5| Mouse DNA sequence from clone RP23-167P8 on chromosome X, complete
             sequence
          Length = 38266

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   agaaatgggcacaagggagc 191
             ||||||||||||||||||||
Sbjct: 14029 agaaatgggcacaagggagc 14048


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,035,759
Number of Sequences: 3902068
Number of extensions: 4035759
Number of successful extensions: 85400
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85035
Number of HSP's gapped (non-prelim): 356
length of query: 559
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 536
effective length of database: 17,143,297,704
effective search space: 9188807569344
effective search space used: 9188807569344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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