Clone Information

BLAST Search Result

Clone Name	basdk23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4	180	9e-46
2	R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2	179	1e-45
3	R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3	178	3e-45
4	R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1	178	3e-45
5	RL13A_PICMA (O65055) 60S ribosomal protein L13a	176	2e-44
6	RL13A_LUPLU (O49885) 60S ribosomal protein L13a	169	1e-42
7	RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a	142	2e-34
8	RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a	142	2e-34
9	RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a	142	2e-34
10	RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly b...	142	2e-34
11	RL13A_PIG (Q95307) 60S ribosomal protein L13a (Fragment)	142	2e-34
12	RL13A_RAT (P35427) 60S ribosomal protein L13a	140	8e-34
13	RL13A_MOUSE (P19253) 60S ribosomal protein L13a (Transplantation...	140	8e-34
14	RL13A_CYAPA (P93099) 60S ribosomal protein L13a	140	8e-34
15	RL13A_SALTR (Q91487) 60S ribosomal protein L13a (Transplantation...	138	3e-33
16	RL13A_SPOFR (Q962U0) 60S ribosomal protein L13A	132	2e-31
17	RL13A_CHOPR (Q8MUR4) 60S ribosomal protein L13A	130	6e-31
18	RL13A_DROME (Q9VNE9) 60S ribosomal protein L13A	130	1e-30
19	RL13A_CAEEL (Q27389) 60S ribosomal protein L13a	128	3e-30
20	RL16_NEUCR (Q9P720) 60S ribosomal protein L16	124	4e-29
21	RL16B_SCHPO (O42991) 60S ribosomal protein L16-B	124	4e-29
22	RL16A_SCHPO (O42848) 60S ribosomal protein L16-A	124	4e-29
23	RL16A_YEAST (P26784) 60S ribosomal protein L16-A (L13A) (RP22)	120	1e-27
24	RL16C_SCHPO (O43004) 60S ribosomal protein L16-C	119	2e-27
25	RL16B_YEAST (P26785) 60S ribosomal protein L16-B (YL15) (RP23)	114	8e-26
26	RL13_ARCFU (O29137) 50S ribosomal protein L13P	75	4e-14
27	RLSX_METTH (O26146) Fused L13/S9 ribosomal protein [Includes: 50...	72	4e-13
28	RL13_PYRHO (O59300) 50S ribosomal protein L13P	70	2e-12
29	RL13_PYRAB (Q9V196) 50S ribosomal protein L13P	70	2e-12
30	RL13_METJA (P54023) 50S ribosomal protein L13P	60	1e-09
31	RL13_HALMA (P29198) 50S ribosomal protein L13P (Hmal13)	59	2e-09
32	RL13_AERPE (Q9YB50) 50S ribosomal protein L13P	57	9e-09
33	RL13_HALSA (Q9HQJ3) 50S ribosomal protein L13P	55	3e-08
34	RL13_SULAC (P39473) 50S ribosomal protein L13P	48	7e-06
35	RL13_SULSO (P95991) 50S ribosomal protein L13P	47	1e-05
36	RK13_PORPU (P51292) Chloroplast 50S ribosomal protein L13	35	0.059
37	RL13_STRCO (Q53874) 50S ribosomal protein L13	32	0.29
38	RK13_SPIOL (P12629) 50S ribosomal protein L13, chloroplast precu...	32	0.50
39	RL13_SYNY3 (P73294) 50S ribosomal protein L13	31	0.65
40	RM23_YEAST (Q12487) 60S ribosomal protein L23, mitochondrial pre...	31	0.65
41	GLYA_HALSA (Q9HPY5) Serine hydroxymethyltransferase (EC 2.1.2.1)...	31	0.85
42	ENG2_YEAST (Q12168) Endo-1,3(4)-beta-glucanase 2 (EC 3.2.1.6) (E...	31	0.85
43	NRFE_ECOLI (P32710) Cytochrome c-type biogenesis protein nrfE	30	1.1
44	TRI14_HUMAN (Q14142) Tripartite motif protein 14	30	1.1
45	RL13_TREPA (O83988) 50S ribosomal protein L13	30	1.9
46	INVO_PIG (P18175) Involucrin	29	2.5
47	GLYA_HALMA (Q5V3D7) Serine hydroxymethyltransferase (EC 2.1.2.1)...	29	2.5
48	MRAW_METCA (Q604V0) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)	29	2.5
49	PTPA1_CANAL (Q5ADP9) Serine/threonine-protein phosphatase 2A act...	29	2.5
50	PPARA_XENLA (P37232) Peroxisome proliferator-activated receptor ...	29	2.5
51	TIMD2_RAT (Q5FVR0) T-cell immunoglobulin and mucin domain-contai...	29	3.2
52	RL13_HELPY (P56038) 50S ribosomal protein L13	29	3.2
53	GLYA_NATPD (Q3IRX5) Serine hydroxymethyltransferase (EC 2.1.2.1)...	28	4.2
54	MAFB_RAT (P54842) Transcription factor MafB (V-maf musculoaponeu...	28	4.2
55	MAFB_MOUSE (P54841) Transcription factor MafB (V-maf musculoapon...	28	4.2
56	MAFB_HUMAN (Q9Y5Q3) Transcription factor MafB (V-maf musculoapon...	28	4.2
57	3BP2_MOUSE (Q06649) SH3 domain-binding protein 2 (3BP-2)	28	5.5
58	S3TC1_HUMAN (Q8TE82) SH3 domain and tetratricopeptide repeats-co...	28	5.5
59	NU4M_BRARE (Q9MIY1) NADH-ubiquinone oxidoreductase chain 4 (EC 1...	28	5.5
60	GRIPE_HUMAN (Q6GYQ0) GTPase-activating Rap/Ran-GAP domain-like 1...	28	5.5
61	APT1_ARATH (P31166) Adenine phosphoribosyltransferase 1 (EC 2.4....	28	5.5
62	UNG_SHV21 (Q01019) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)	28	5.5
63	CED7_CAEEL (P34358) ABC transporter ced-7 (Cell death protein 7)	28	7.2
64	YCX2_CHLMO (P09754) Hypothetical 35.9 kDa protein in psbA intron 2	28	7.2
65	MURA_RHORT (Q2RQ67) UDP-N-acetylglucosamine 1-carboxyvinyltransf...	28	7.2
66	CABP4_MOUSE (Q8VHC5) Calcium-binding protein 4 (CaBP4)	28	7.2
67	Y369_TREPA (O83384) Hypothetical protein TP0369 precursor	28	7.2
68	MAD4_HUMAN (Q14582) Max-interacting transcriptional repressor MA...	27	9.4
69	FBN2_HUMAN (P35556) Fibrillin-2 precursor	27	9.4
70	MGR1_MOUSE (P97772) Metabotropic glutamate receptor 1 precursor ...	27	9.4
71	RL13_HELPJ (Q9ZMY6) 50S ribosomal protein L13	27	9.4
72	PP14B_RAT (Q8K3F3) Protein phosphatase 1 regulatory subunit 14B ...	27	9.4
73	PP14B_MOUSE (Q62084) Protein phosphatase 1 regulatory subunit 14...	27	9.4
74	COA2_SV40 (P03093) Coat protein VP2 [Contains: Coat protein VP3]	27	9.4

>R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4|
          Length = 206

 Score =  180 bits (456), Expect = 9e-46
 Identities = 84/95 (88%), Positives = 90/95 (94%)
 Frame = +2

Query: 74  HHMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIH 253
           HHMLGRLASI AKELLNGQ+VV+VRCEE+C+SGGLVRQKMKY+RFLRKRMNTKPSHGPIH
Sbjct: 18  HHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIH 77

Query: 254 FRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           FRAPSKIFWRTVRGMIPHKT RG AALAR K +EG
Sbjct: 78  FRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEG 112

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>R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2|
          Length = 206

 Score =  179 bits (455), Expect = 1e-45
 Identities = 85/95 (89%), Positives = 89/95 (93%)
 Frame = +2

Query: 74  HHMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIH 253
           HHM GRLASI+AKELLNGQ VVVVRCEE+C+SGGLVRQKMKY+RFLRKRMNTKPSHGPIH
Sbjct: 18  HHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIH 77

Query: 254 FRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           FRAPSKIFWRTVRGMIPHKT RG AALAR K FEG
Sbjct: 78  FRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEG 112

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>R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3|
          Length = 206

 Score =  178 bits (451), Expect = 3e-45
 Identities = 85/95 (89%), Positives = 88/95 (92%)
 Frame = +2

Query: 74  HHMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIH 253
           HHMLGRLAS  AKELLNGQ VVVVRCEE+C+SGGLVRQKMKY+RFLRKRMNTKPSHGPIH
Sbjct: 18  HHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIH 77

Query: 254 FRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           FRAPSKIFWRTVRGMIPHKT RG AALAR K FEG
Sbjct: 78  FRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEG 112

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>R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1|
          Length = 206

 Score =  178 bits (451), Expect = 3e-45
 Identities = 83/95 (87%), Positives = 89/95 (93%)
 Frame = +2

Query: 74  HHMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIH 253
           HHMLGRLAS+VAK+LLNGQ +VVVRCEE+C+SGGLVRQKMKY+RFLRKRMNTKPSHGPIH
Sbjct: 18  HHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIH 77

Query: 254 FRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           FRAPSKIFWRTVRGMIPHKT RG  ALAR K FEG
Sbjct: 78  FRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEG 112

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>RL13A_PICMA (O65055) 60S ribosomal protein L13a|
          Length = 206

 Score =  176 bits (445), Expect = 2e-44
 Identities = 83/95 (87%), Positives = 90/95 (94%)
 Frame = +2

Query: 74  HHMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIH 253
           HHMLGRLASI+AKELL+GQRVVVVRCEE+C+SGGLVRQKMKYLRFLRKRMNTKPSHGPIH
Sbjct: 18  HHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIH 77

Query: 254 FRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           FRAPS+I WRT+RGMIPHKT RG AALA  +AFEG
Sbjct: 78  FRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEG 112

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>RL13A_LUPLU (O49885) 60S ribosomal protein L13a|
          Length = 205

 Score =  169 bits (429), Expect = 1e-42
 Identities = 84/95 (88%), Positives = 88/95 (92%)
 Frame = +2

Query: 74  HHMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIH 253
           HHMLGRLASIVAKELLNGQ+VV+VR EE+CISGGLVRQKMKYLRFLRKRMNTKPSHGPIH
Sbjct: 18  HHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIH 77

Query: 254 FRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
             APSKIFWRTVRGMIPHKT RGE ALAR K +EG
Sbjct: 78  C-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEG 111

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>RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a|
          Length = 202

 Score =  142 bits (359), Expect = 2e-34
 Identities = 67/94 (71%), Positives = 79/94 (84%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLA+IVAK++L G++VVVVRCE + ISG   R K+KYL FLRKRMNT PS GP HF
Sbjct: 13  HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHF 72

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPS+IFWRTVRGM+PHKT RG+AAL R K F+G
Sbjct: 73  RAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDG 106

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>RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a|
          Length = 202

 Score =  142 bits (358), Expect = 2e-34
 Identities = 67/94 (71%), Positives = 79/94 (84%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLA+IVAK++L G++VVVVRCE + ISG   R K+KYL FLRKRMNT PS GP HF
Sbjct: 13  HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHF 72

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPS+IFWRTVRGM+PHKT RG+AAL R K F+G
Sbjct: 73  RAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDG 106

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>RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a|
          Length = 202

 Score =  142 bits (358), Expect = 2e-34
 Identities = 67/94 (71%), Positives = 79/94 (84%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLA+IVAK++L G++VVVVRCE + ISG   R K+KYL FLRKRMNT PS GP HF
Sbjct: 13  HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHF 72

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPS+IFWRTVRGM+PHKT RG+AAL R K F+G
Sbjct: 73  RAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDG 106

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>RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly basic protein)|
          Length = 202

 Score =  142 bits (358), Expect = 2e-34
 Identities = 67/94 (71%), Positives = 79/94 (84%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLA+IVAK++L G++VVVVRCE + ISG   R K+KYL FLRKRMNT PS GP HF
Sbjct: 13  HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHF 72

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPS+IFWRTVRGM+PHKT RG+AAL R K F+G
Sbjct: 73  RAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDG 106

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>RL13A_PIG (Q95307) 60S ribosomal protein L13a (Fragment)|
          Length = 137

 Score =  142 bits (358), Expect = 2e-34
 Identities = 67/94 (71%), Positives = 79/94 (84%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLA+IVAK++L G++VVVVRCE + ISG   R K+KYL FLRKRMNT PS GP HF
Sbjct: 10  HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHF 69

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPS+IFWRTVRGM+PHKT RG+AAL R K F+G
Sbjct: 70  RAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDG 103

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>RL13A_RAT (P35427) 60S ribosomal protein L13a|
          Length = 202

 Score =  140 bits (353), Expect = 8e-34
 Identities = 66/94 (70%), Positives = 78/94 (82%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLA+IVAK++L G++VVVVRCE + ISG   R K+KYL FLRKRMNT PS GP HF
Sbjct: 13  HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHF 72

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPS+IFWRTVRGM+PHKT RG+AAL R K  +G
Sbjct: 73  RAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDG 106

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>RL13A_MOUSE (P19253) 60S ribosomal protein L13a (Transplantation antigen P198)|
           (Tum-P198 antigen)
          Length = 202

 Score =  140 bits (353), Expect = 8e-34
 Identities = 66/94 (70%), Positives = 78/94 (82%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLA+IVAK++L G++VVVVRCE + ISG   R K+KYL FLRKRMNT PS GP HF
Sbjct: 13  HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHF 72

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPS+IFWRTVRGM+PHKT RG+AAL R K  +G
Sbjct: 73  RAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDG 106

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>RL13A_CYAPA (P93099) 60S ribosomal protein L13a|
          Length = 200

 Score =  140 bits (353), Expect = 8e-34
 Identities = 66/94 (70%), Positives = 77/94 (81%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLA+ +AKELLNGQRVV VR EE+ ISG L R K+K+  FL+KRMNT P  GP HF
Sbjct: 13  HLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHF 72

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           R+P++I WRT+RGMIPHKTPRG AAL R KAFEG
Sbjct: 73  RSPARILWRTIRGMIPHKTPRGAAALERLKAFEG 106

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>RL13A_SALTR (Q91487) 60S ribosomal protein L13a (Transplantation antigen P198|
           homolog) (Fragment)
          Length = 189

 Score =  138 bits (348), Expect = 3e-33
 Identities = 66/93 (70%), Positives = 76/93 (81%)
 Frame = +2

Query: 80  MLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFR 259
           +LGRLA+IVA E+L G +VVVVRCE + ISG   R K+KYL FLRKRMNT PS GP HFR
Sbjct: 1   LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFR 60

Query: 260 APSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           APS+IFWRTVRGM+PHKT RG+AAL R K F+G
Sbjct: 61  APSRIFWRTVRGMLPHKTKRGQAALERLKVFDG 93

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>RL13A_SPOFR (Q962U0) 60S ribosomal protein L13A|
          Length = 204

 Score =  132 bits (333), Expect = 2e-31
 Identities = 59/94 (62%), Positives = 76/94 (80%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLA+++AK LL G +VVVVRCE++ ISG   R K+K++ FLRKR N  P+ GP HF
Sbjct: 16  HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARGPFHF 75

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPSKI W+TVRGMIPHKT RG++AL R +A++G
Sbjct: 76  RAPSKILWKTVRGMIPHKTERGKSALRRLRAYDG 109

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>RL13A_CHOPR (Q8MUR4) 60S ribosomal protein L13A|
          Length = 204

 Score =  130 bits (328), Expect = 6e-31
 Identities = 58/94 (61%), Positives = 75/94 (79%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLA+++AK LL G +VVVVRCE++ ISG   R K+K++ FLRKR N  P+ GP HF
Sbjct: 16  HLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARGPFHF 75

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPSKI W+TVRGMIPHKT RG+ AL R ++++G
Sbjct: 76  RAPSKILWKTVRGMIPHKTERGKDALRRLRSYDG 109

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>RL13A_DROME (Q9VNE9) 60S ribosomal protein L13A|
          Length = 205

 Score =  130 bits (326), Expect = 1e-30
 Identities = 60/94 (63%), Positives = 75/94 (79%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLAS+VAK LL G +V VVRCEE+ +SG   R K+K+L +LRKR N  P+ GP HF
Sbjct: 16  HLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHF 75

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPS+IF++ VRGMIPHKT RG+AALAR + F+G
Sbjct: 76  RAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDG 109

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>RL13A_CAEEL (Q27389) 60S ribosomal protein L13a|
          Length = 202

 Score =  128 bits (322), Expect = 3e-30
 Identities = 60/95 (63%), Positives = 73/95 (76%)
 Frame = +2

Query: 74  HHMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIH 253
           +H+LGRLASIVAK+LL G +VVV+R EE+ ISG   R K+KY+ FLRKR N  P+ G  H
Sbjct: 14  NHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFH 73

Query: 254 FRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           +RAP KIFWRTVRGM+PHKT RG  AL   +A+EG
Sbjct: 74  YRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEG 108

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>RL16_NEUCR (Q9P720) 60S ribosomal protein L16|
          Length = 202

 Score =  124 bits (312), Expect = 4e-29
 Identities = 62/95 (65%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSH-GPIH 253
           H+LGRLASIVAK+LLNGQ++VVVRCE + ISG   R K+KY  +LRK     P+  GP H
Sbjct: 15  HLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFH 74

Query: 254 FRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           FRAPS+IF++ VRGMIPHKT RG AAL R K FEG
Sbjct: 75  FRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEG 109

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>RL16B_SCHPO (O42991) 60S ribosomal protein L16-B|
          Length = 197

 Score =  124 bits (312), Expect = 4e-29
 Identities = 60/94 (63%), Positives = 72/94 (76%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLAS+VAK+LL GQ+VVVVRCEE+ ISG   R K+KYL +LRK     PS G  HF
Sbjct: 15  HLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHF 74

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPS+IF + VRGM+PHKT RG+AAL   +A EG
Sbjct: 75  RAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEG 108

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>RL16A_SCHPO (O42848) 60S ribosomal protein L16-A|
          Length = 197

 Score =  124 bits (312), Expect = 4e-29
 Identities = 60/94 (63%), Positives = 72/94 (76%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLAS+VAK+LL GQ+VVVVRCEE+ ISG   R K+KYL +LRK     PS G  HF
Sbjct: 15  HLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHF 74

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPS+IF + VRGM+PHKT RG+AAL   +A EG
Sbjct: 75  RAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEG 108

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>RL16A_YEAST (P26784) 60S ribosomal protein L16-A (L13A) (RP22)|
          Length = 198

 Score =  120 bits (300), Expect = 1e-27
 Identities = 57/94 (60%), Positives = 72/94 (76%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H++GRLAS+VAK+LLNGQ++VVVR EE+ ISG   R K+KY  FLRK      + GP HF
Sbjct: 13  HLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHF 72

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPS+IF++ +RGM+ HKT RG+AAL R K FEG
Sbjct: 73  RAPSRIFYKALRGMVSHKTARGKAALERLKVFEG 106

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>RL16C_SCHPO (O43004) 60S ribosomal protein L16-C|
          Length = 197

 Score =  119 bits (298), Expect = 2e-27
 Identities = 58/94 (61%), Positives = 69/94 (73%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H++GRLAS VAK+LL GQ+VVVVRCEE+ ISG   R K+KYL +LRK     PS G  HF
Sbjct: 15  HLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHF 74

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPS+IF + VRGM+PHKT RG  AL   +A EG
Sbjct: 75  RAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEG 108

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>RL16B_YEAST (P26785) 60S ribosomal protein L16-B (YL15) (RP23)|
          Length = 197

 Score =  114 bits (284), Expect = 8e-26
 Identities = 54/94 (57%), Positives = 69/94 (73%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRLAS +AK++LNGQ++VVVR E + ISG   R K+KY  FLRK      + GP HF
Sbjct: 12  HLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHF 71

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           RAPS+I ++ +RGM+ HKT RG+AAL R K FEG
Sbjct: 72  RAPSRILYKAIRGMVSHKTARGKAALERLKIFEG 105

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>RL13_ARCFU (O29137) 50S ribosomal protein L13P|
          Length = 156

 Score = 75.1 bits (183), Expect = 4e-14
 Identities = 42/94 (44%), Positives = 56/94 (59%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           H+LGRL+S +AK LLNG+R+VVV  E+  I+G    + M + R+  K        GP   
Sbjct: 24  HILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKEKGPYFP 80

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           R P +IF RTVRGM+P K+ RG  A  R + F G
Sbjct: 81  RHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMG 114

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>RLSX_METTH (O26146) Fused L13/S9 ribosomal protein [Includes: 50S ribosomal|
           protein L13P; 30S ribosomal protein S9P]
          Length = 282

 Score = 71.6 bits (174), Expect = 4e-13
 Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
 Frame = +2

Query: 77  HMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSH-GPIH 253
           H+LGRLAS+V+K+LL G+ V+V+  E++ I+G       KY + + +   + P   GP +
Sbjct: 11  HILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKY 70

Query: 254 FRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
            R P  IF RTVRGM+P+K  +G  A    KA+ G
Sbjct: 71  PRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVG 105

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>RL13_PYRHO (O59300) 50S ribosomal protein L13P|
          Length = 142

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 40/93 (43%), Positives = 52/93 (55%)
 Frame = +2

Query: 80  MLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFR 259
           +LGRLAS VAK LL G+ VV+V  E+  I+G       KY +    R  T P  GP + +
Sbjct: 10  ILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPK 69

Query: 260 APSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
              +I  RT+RGM+P KT RG  A  R K + G
Sbjct: 70  RSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVG 102

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>RL13_PYRAB (Q9V196) 50S ribosomal protein L13P|
          Length = 142

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 40/93 (43%), Positives = 52/93 (55%)
 Frame = +2

Query: 80  MLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFR 259
           +LGRLAS VAK LL G+ VV+V  E+  I+G       KY +    R  T P  GP + +
Sbjct: 10  ILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPK 69

Query: 260 APSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
              +I  RT+RGM+P KT RG  A  R K + G
Sbjct: 70  RSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVG 102

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>RL13_METJA (P54023) 50S ribosomal protein L13P|
          Length = 137

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = +2

Query: 80  MLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSH-GPIHF 256
           +LGRLAS VAK +L G+ +V+V  E + I+G        Y     K+    P   GP   
Sbjct: 10  ILGRLASEVAKRVLRGEEIVIVNAEMVVITGNKDWIIKTYQEEREKKNVANPRRFGPKFP 69

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           R P  I  RT+R M+P+K P+G  A  R K + G
Sbjct: 70  RRPDDILRRTIRKMLPYKKPKGREAFKRVKVYVG 103

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>RL13_HALMA (P29198) 50S ribosomal protein L13P (Hmal13)|
          Length = 145

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 34/93 (36%), Positives = 52/93 (55%)
 Frame = +2

Query: 80  MLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFR 259
           ++GR+AS VA++ L+G+ V VV  E   I+G   +   KY     KR++    +G  + +
Sbjct: 18  IMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRVDIGNDNGYFYPK 73

Query: 260 APSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
            P  IF RT+RGM+PHK  RG  A    + + G
Sbjct: 74  RPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG 106

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>RL13_AERPE (Q9YB50) 50S ribosomal protein L13P|
          Length = 155

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
 Frame = +2

Query: 80  MLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSH--GPIH 253
           ++GRLAS+VAK LL G RV VV  E++ +SG   R  ++  R     + +  SH   P  
Sbjct: 19  IMGRLASVVAKLLLAGWRVNVVNAEKIVLSGD-PRMVVESYRTTVLGVKSHFSHKWRPKR 77

Query: 254 FRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
            R P ++F   VRGM+P    RG  ALAR + + G
Sbjct: 78  PRTPQRLFKHAVRGMLPKNKARGRRALARLRVYVG 112

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>RL13_HALSA (Q9HQJ3) 50S ribosomal protein L13P|
          Length = 145

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 33/93 (35%), Positives = 47/93 (50%)
 Frame = +2

Query: 80  MLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFR 259
           ++GR+AS VA+  L G RV VV  E+  I+G     +       R R N     GP + +
Sbjct: 18  IMGRVASNVAERALAGDRVAVVNAEQAVITG----TEDDVFSTYRTRANLGSDRGPYYPK 73

Query: 260 APSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
            P  IF R +RGM+P+K   G  AL   + + G
Sbjct: 74  RPDGIFKRAIRGMLPYKQDDGREALDSVRVYVG 106

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>RL13_SULAC (P39473) 50S ribosomal protein L13P|
          Length = 148

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
 Frame = +2

Query: 74  HHMLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKY-LRFLRKRMNTKPSHGPI 250
           + +LGR+++ +AK L +G++V VV  E+  ISG   R    Y L F  K M      G  
Sbjct: 14  NQILGRMSTHIAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVKTMQNPYRQGIR 73

Query: 251 HFRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
             R P  I  RTVRGM+P K   G+      KA+ G
Sbjct: 74  RPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIG 108

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>RL13_SULSO (P95991) 50S ribosomal protein L13P|
          Length = 149

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
 Frame = +2

Query: 80  MLGRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF- 256
           +LGR+AS V + L  G++V++V  E+  ISG   R    Y   L  +    P    I   
Sbjct: 18  ILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNPYRNGIRRP 77

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
           R+P  I  RT+RGM+P K+ +G   L   K + G
Sbjct: 78  RSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVG 110

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>RK13_PORPU (P51292) Chloroplast 50S ribosomal protein L13|
          Length = 142

 Score = 34.7 bits (78), Expect = 0.059
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +2

Query: 125 GQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTK-PSHGPIHFRAPSKIFWRTVRGMI 301
           G  V+V+   E+ +SG    QK+ Y R   +    K  +   +  R P++I  ++V+GM+
Sbjct: 51  GDYVIVINSSEVSVSGNKTTQKL-YRRHSGQPGGLKVETFEQLQTRLPNRIVEKSVKGML 109

Query: 302 PHKTPRGEAALARXKAFEG 358
           P K P G     + K + G
Sbjct: 110 P-KGPLGRKLFTKLKVYPG 127

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>RL13_STRCO (Q53874) 50S ribosomal protein L13|
          Length = 147

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 21/91 (23%), Positives = 41/91 (45%)
 Frame = +2

Query: 86  GRLASIVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAP 265
           G+   I A  +  G  V+++  +++ +SG    QKM Y             +  +  + P
Sbjct: 38  GKHKPIYAPHVDTGDFVIIINADKVHLSGNKRTQKMAYRHSGYPGGLRSVRYDELLDKNP 97

Query: 266 SKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
            K   + ++GM+P K   G   L++ K ++G
Sbjct: 98  EKAVEKAIKGMLP-KNSLGRQMLSKLKVYKG 127

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>RK13_SPIOL (P12629) 50S ribosomal protein L13, chloroplast precursor (CL13)|
          Length = 250

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
 Frame = +2

Query: 80  MLGRLASIVA-----KELLN-------GQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRM 223
           +LGR+AS +A     K L +       G  V+VV  +++ +SG    QK+      R   
Sbjct: 123 ILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGG 182

Query: 224 NTKPSHGPIHFRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
             + +   +  R P +I    VRGM+P K   G       K ++G
Sbjct: 183 LKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRYLFNHLKVYKG 226

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>RL13_SYNY3 (P73294) 50S ribosomal protein L13|
          Length = 151

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
 Frame = +2

Query: 83  LGRLASIVAKELLN------------GQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMN 226
           LGRLA+ VA  L              G  V+++  E++ ++G    QK+      R    
Sbjct: 26  LGRLATEVATILRGKNKPTFTPHMDTGDFVIIINAEKIEVTGRKREQKLYRRHSGRPGGM 85

Query: 227 TKPSHGPIHFRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
            + +   +  R P +I    VRGM+P K   G     + K + G
Sbjct: 86  KEETFEKLQVRLPERIVESAVRGMLP-KNSLGRKLFTKLKVYAG 128

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>RM23_YEAST (Q12487) 60S ribosomal protein L23, mitochondrial precursor (YmL23)|
          Length = 163

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
 Frame = +2

Query: 83  LGRLASIVAKELLN------------GQRVVVVRCEEMCISGGLVRQKMKYLRFLRK-RM 223
           LGRLAS +A  L+             G  VVV  C+++ ++G    QK  +    R  ++
Sbjct: 28  LGRLASAIAITLIGRHKPVYHPSQDCGDYVVVTNCQKIRVTGKKFEQKTYWSHSGRPGQL 87

Query: 224 NTKPSHGPIHFRAPSKIFWRTVRGMIPHKTPRGEAALARXKAFEG 358
             +  +  +  +   +I  + V GM+P K    +  L R K F+G
Sbjct: 88  KLQTMNKVVADKGFGEILKKAVSGMLP-KNKLRKQRLDRLKVFDG 131

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>GLYA_HALSA (Q9HPY5) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 415

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
 Frame = -1

Query: 346 LXPGERSLAAGRLVRDHAAHGAPENFRGGA------EVDGTVRRLGVHPLAEEAE 200
           L PG++ L+       H +HG P NF G        EVD    RL    L E A+
Sbjct: 108 LAPGDKILSLDLTHGGHLSHGHPANFAGQLYEVEQYEVDAETGRLDYEALREHAD 162

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>ENG2_YEAST (Q12168) Endo-1,3(4)-beta-glucanase 2 (EC 3.2.1.6)|
           (Endo-1,4-beta-glucanase 2) (Endo-1,3-beta-glucanase 2)
           (Laminarinase-2)
          Length = 779

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 169 RRAGPSEDEVPPLPPQADEHQAVARSHPLPRPLENFLAHRARHDPAQDAP 318
           R  G +    PPLPP+A+    V  S    +P EN +A  +   P+   P
Sbjct: 15  RPGGTTNRGPPPLPPRANVQPPVCSSENSSKPRENRVAGESLRTPSSSNP 64

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>NRFE_ECOLI (P32710) Cytochrome c-type biogenesis protein nrfE|
          Length = 552

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
 Frame = +3

Query: 42  CPRVAWWWMRATTCWDALRR-----SWPRSCSTGSAWWWF 146
           C R+ W W  A   W AL       SW   C  G   WWF
Sbjct: 186 CARICWRW--ALPGWSALTAGIILGSWWAYCELGWGGWWF 223

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>TRI14_HUMAN (Q14142) Tripartite motif protein 14|
          Length = 442

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
 Frame = +3

Query: 30  PAPVCPRVAWWWMRATTCWDALRRSWPRSCSTGSAWWWFGA------RRCASPA 173
           P PV    A W + A  C+   R  W        A WW GA      RR AS A
Sbjct: 299 PVPVLRFDALWQVLARDCFATGRHYWEVDVQEAGAGWWVGAAYASLRRRGASAA 352

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>RL13_TREPA (O83988) 50S ribosomal protein L13|
          Length = 142

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = +2

Query: 125 GQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIP 304
           G  VVV+  E++ +SG   + KM Y            S   +  R P +     V+GM+P
Sbjct: 51  GDYVVVINAEKVFLSGTKPKDKMYYRHSGYPGGLKSVSFSALVKRRPVEPLRHAVKGMLP 110

Query: 305 HKTPRGEAALARXKAFEG 358
            K P G   +   K + G
Sbjct: 111 -KGPLGRKLIKNVKIYAG 127

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>INVO_PIG (P18175) Involucrin|
          Length = 347

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 184 SEDEVPPLPPQADEHQA-VARSHPLPRPLENFLAHRARHDPAQDAPR 321
           S++ + P+ P AD  Q  V ++ PLP P +  L+      P +DA +
Sbjct: 16  SQEPLKPVSPPADTQQEQVKQATPLPAPCQKMLSELPVEVPLEDAEK 62

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>GLYA_HALMA (Q5V3D7) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 415

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
 Frame = -1

Query: 346 LXPGERSLAAGRLVRDHAAHGAPENFRGGA---------EVDGTVRRLGVHPLAEEAE 200
           L PG++ L+       H +HG P NF G           E  G V   G+H  AEE E
Sbjct: 108 LEPGDKILSLDLTHGGHLSHGHPANFAGQVYEVEQYKVDEETGYVDYEGLHDHAEEFE 165

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>MRAW_METCA (Q604V0) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 301

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = -2

Query: 270 FEGARKWMGPCDGLVF------IRLRRKRRYFIF*RTSPPEMHISSHRTTT 136
           F GAR W G  DG++        +L   RR F F R  P +M +   + TT
Sbjct: 78  FVGARGWTGRVDGILMDLGVSSPQLDNARRGFSFLRAGPLDMRMDPTQKTT 128

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>PTPA1_CANAL (Q5ADP9) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 424

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -2

Query: 174 PPEMHISSHRTTTTRCPLSSSLATIDARRPSMWWRASTTTRRA 46
           PPE  ++S  TTTT   +SSS + I    P+ W  A+TTT  A
Sbjct: 372 PPETTLNSTTTTTTTTKVSSSTSKIPF-TPAPW--ANTTTTHA 411

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>PPARA_XENLA (P37232) Peroxisome proliferator-activated receptor alpha|
           (PPAR-alpha)
          Length = 474

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 131 RVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHF 256
           ++V  RCE MC      R K +Y RF  K +N   SH  I F
Sbjct: 140 KLVYDRCERMCKIQKKNRNKCQYCRF-EKCLNVGMSHNAIRF 180

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>TIMD2_RAT (Q5FVR0) T-cell immunoglobulin and mucin domain-containing protein|
           2 precursor (TIMD-2) (T-cell membrane protein 2) (TIM-2)
          Length = 349

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = -2

Query: 180 TSPPEMHISSHRTTTTRCPLSSSLATIDARRPSMWWRASTTTRRADTPEPDT 25
           TSPP    ++ R TTTR P ++   T    RP+   R +TT R   T  P T
Sbjct: 130 TSPPTRPTNTGRPTTTR-PTNTGRPT--TTRPTNTGRPTTTERPTTTGRPTT 178

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>RL13_HELPY (P56038) 50S ribosomal protein L13|
          Length = 141

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAF 352
           +AP K++   VRGM+P KT  G+A + + K +
Sbjct: 94  KAPEKLYHLAVRGMLP-KTKLGKAMIKKLKVY 124

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>GLYA_NATPD (Q3IRX5) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 424

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = -1

Query: 355 LERLXPGERSLAAGRLVRDHAAHGAPENFRGGA------EVDGTVRRLGVHPLAEEAE 200
           L  L PG+R L+       H +HG P NF G        EVD     +    L E+AE
Sbjct: 105 LAMLEPGDRILSLELEHGGHLSHGHPANFTGQTYEVEQYEVDPETGYIDYDELHEQAE 162

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>MAFB_RAT (P54842) Transcription factor MafB (V-maf musculoaponeurotic|
           fibrosarcoma oncogene homolog B) (Transcription factor
           MAF1)
          Length = 323

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 220 DEHQAVARSHPLPRPLENFLAHRARH 297
           D  +A+  SHP+P+PL++F   R+ H
Sbjct: 106 DAVEALIGSHPVPQPLQSFDGFRSAH 131

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>MAFB_MOUSE (P54841) Transcription factor MafB (V-maf musculoaponeurotic|
           fibrosarcoma oncogene homolog B) (Transcription factor
           MAF1) (Segmentation protein KR) (Kreisler)
          Length = 323

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 220 DEHQAVARSHPLPRPLENFLAHRARH 297
           D  +A+  SHP+P+PL++F   R+ H
Sbjct: 106 DAVEALIGSHPVPQPLQSFDGFRSAH 131

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>MAFB_HUMAN (Q9Y5Q3) Transcription factor MafB (V-maf musculoaponeurotic|
           fibrosarcoma oncogene homolog B)
          Length = 323

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 220 DEHQAVARSHPLPRPLENFLAHRARH 297
           D  +A+  SHP+P+PL++F + R  H
Sbjct: 106 DAVEALIGSHPVPQPLQSFDSFRGAH 131

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>3BP2_MOUSE (Q06649) SH3 domain-binding protein 2 (3BP-2)|
          Length = 559

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
 Frame = +1

Query: 40  CVRASRGGGCAP--PHAGTPCVDXXXXXXXXXXXXXXSVRGDVHLRRAGPSEDEVPPLPP 213
           C R S   G  P  P  GT  V                ++   HL   GP   E PP+P 
Sbjct: 295 CFRDSVNPGLEPWTPGHGTSSVSSSTTMAVATSRNCDKLKS-FHLSSRGPPTSEPPPVPA 353

Query: 214 QADEHQAVARSHPLPRPLENF 276
              +   +A   P PR    F
Sbjct: 354 NKPKFLKIA-EEPSPREAAKF 373

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>S3TC1_HUMAN (Q8TE82) SH3 domain and tetratricopeptide repeats-containing|
           protein 1
          Length = 1336

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +1

Query: 175 AGPSEDEVPPLPPQADEHQAVARSHPLPRPLENF--LAHRARHDPAQDA 315
           A P  D  PP P  + E  AVA +   P PL  F   A R   DP  DA
Sbjct: 248 AAPETDSSPPSPSVSSEEVAVAAA---PEPLIPFHQWALRIPQDPIDDA 293

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>NU4M_BRARE (Q9MIY1) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 460

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = -2

Query: 171 PEMHISSHRTTTTRCPLSSSLATIDARRPSMW-----WRASTTTRRADT-PEPDTIVTCW 10
           P + +SS +   T   ++S L    +     W     W AS +   AD    P  ++TCW
Sbjct: 13  PTIWLSSSKWLWTTTTMNSFLIAFISLTWLKWTSDTGWNASNSYMAADPLSTPLLVLTCW 72

Query: 9   LLP 1
           LLP
Sbjct: 73  LLP 75

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>GRIPE_HUMAN (Q6GYQ0) GTPase-activating Rap/Ran-GAP domain-like 1|
           (GAP-related-interacting partner to E12) (GRIPE)
           (Tuberin-like protein 1)
          Length = 2036

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 183 RTSPPEMHISSHRTTTTRCPLSSSLATID 97
           RT+ PE   S+  T T R P SSSL +ID
Sbjct: 359 RTTEPEQSHSNTSTLTEREPSSSSLCSID 387

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>APT1_ARATH (P31166) Adenine phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT 1)|
          Length = 243

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
 Frame = -2

Query: 177 SPPEMHISSHRTTTTRCPLSSS-------LATIDARRPSMWWRASTTTRRADTPEP 31
           +PP + +S+HR+TT+    SS+       +AT D + P +   AS+     D P+P
Sbjct: 32  APPSIRLSNHRSTTSLRLFSSAAASRDSEMATEDVQDPRIAKIASSIRVIPDFPKP 87

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>UNG_SHV21 (Q01019) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 252

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 232 AVARSHPLPRPLENFLAHRARHDPAQDAPRRGC 330
           +V+  H +P  L+N      R DP   AP  GC
Sbjct: 100 SVSYEHSIPPSLKNIFFELQRSDPLFHAPNHGC 132

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>CED7_CAEEL (P34358) ABC transporter ced-7 (Cell death protein 7)|
          Length = 1704

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 263  PSKIFWRTVRGMIPHKTPRGEAALARXKAFE 355
            PSK+ WR   G IP +    E  L +   FE
Sbjct: 1003 PSKVVWRFENGTIPEEAANFEKILRKSGGFE 1033

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>YCX2_CHLMO (P09754) Hypothetical 35.9 kDa protein in psbA intron 2|
          Length = 312

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 160 VHLRRAGPSEDEVPPLPPQADEHQAVARS 246
           +  RR  P +  +PPLPP A+E +  A++
Sbjct: 94  IEKRRENPPKLTLPPLPPPAEERKKPAKT 122

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>MURA_RHORT (Q2RQ67) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC|
           2.5.1.7) (Enoylpyruvate transferase)
           (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT)
          Length = 425

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 265 GGAEVDGTVRRLGVHPLAEEAEVLHLLTDQP 173
           GGA +DGT+R  G    A     + LLTDQP
Sbjct: 8   GGAPLDGTIRIGGAKNAALTLMPVCLLTDQP 38

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>CABP4_MOUSE (Q8VHC5) Calcium-binding protein 4 (CaBP4)|
          Length = 271

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 208 PPQADEHQAVARSHPLPRPLENFLAHRARHDPAQDAPRR 324
           PP+    Q    S P  RP  +  +HR R DP QDA +R
Sbjct: 69  PPRTKVGQEEPSSAPA-RPASHRHSHRHRSDPQQDAAQR 106

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>Y369_TREPA (O83384) Hypothetical protein TP0369 precursor|
          Length = 516

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +1

Query: 181 PSEDEVPPLPPQADEHQAVARSHPLPRPLENFLAHRARHDPAQD 312
           P +  VPP PP A E    A     P P E+        +P +D
Sbjct: 150 PKQRAVPPSPPPASEPPREAEVQAEPEPAEDSPRAMVPEEPPED 193

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>MAD4_HUMAN (Q14582) Max-interacting transcriptional repressor MAD4|
           (Max-associated protein 4) (MAX dimerization protein 4)
          Length = 209

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 170 GGLVRQKMKYLRFLRKRMNTKPSHGPI--HFRAPSKIFWRTVRGMIP 304
           G   R+K K    +RK  N + SH  +  H RA  +++   ++ ++P
Sbjct: 35  GDFAREKTKAAGLVRKAPNNRSSHNELEKHRRAKLRLYLEQLKQLVP 81

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>FBN2_HUMAN (P35556) Fibrillin-2 precursor|
          Length = 2911

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +3

Query: 27   CPAPVCPRVAWWWMRATTCWDALRRSWPRSCSTGSAWWWFGARRCASPAGW 179
            CP        W       C D    S P +C + S +   G+ +CA P+G+
Sbjct: 2638 CPQGYIQHYQW-----NQCVDENECSNPNACGSASCYNTLGSYKCACPSGF 2683

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>MGR1_MOUSE (P97772) Metabotropic glutamate receptor 1 precursor (mGluR1)|
          Length = 1199

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +1

Query: 166  LRRAGPSEDEVPPLPP--QADEHQAVARSHPLPRPLENFLAHRARHDPAQDAPRR 324
            + R GP     PPLPP   A+E         +P+ L   L  + +  P Q  P++
Sbjct: 978  VHRRGPPVATTPPLPPHLSAEETPLFLADSVIPKGLPPPLPQQQQQPPPQPPPQQ 1032

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>RL13_HELPJ (Q9ZMY6) 50S ribosomal protein L13|
          Length = 141

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 257 RAPSKIFWRTVRGMIPHKTPRGEAALARXKAF 352
           + P K++   VRGM+P KT  G+A + + K +
Sbjct: 94  KTPEKLYHLAVRGMLP-KTKLGKAMIKKLKVY 124

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>PP14B_RAT (Q8K3F3) Protein phosphatase 1 regulatory subunit 14B (Phosphatase|
           holoenzyme inhibitor 1) (PHI-1) (Ubiquitous
           PKC-potentiated PP1 inhibitor)
          Length = 147

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -1

Query: 358 ALERLXPGERSLAAGRLVRDHAAHGAPENFRGGAEVDGTVRRLG 227
           AL    PG  S + G  V   +  GA     GGA+ DG VRR G
Sbjct: 11  ALAAPAPGPGSGSTGPRVYFQSPPGAAGEGPGGADDDGPVRRQG 54

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>PP14B_MOUSE (Q62084) Protein phosphatase 1 regulatory subunit 14B (Phosphatase|
           holoenzyme inhibitor 1) (PHI-1) (Phospholipase C beta 3
           neighbouring gene protein)
          Length = 147

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -1

Query: 358 ALERLXPGERSLAAGRLVRDHAAHGAPENFRGGAEVDGTVRRLG 227
           AL    PG  S + G  V   +  GA     GGA+ DG VRR G
Sbjct: 11  ALAAPAPGPGSGSTGPRVYFQSPPGAAGEGPGGADDDGPVRRQG 54

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>COA2_SV40 (P03093) Coat protein VP2 [Contains: Coat protein VP3]|
          Length = 351

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 233 PSH-GPIHFRAPSKIFWRTVRGMIPHKT 313
           P H GP  F A S+ FWR ++  IP  T
Sbjct: 148 PRHWGPTLFNAISQAFWRVIQNDIPRLT 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,135,312
Number of Sequences: 219361
Number of extensions: 1038932
Number of successful extensions: 4058
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 3793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4039
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result