ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdl22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_550058.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.46
2gb|AC148592.10| Gasterosteus aculeatus clone uogacrs-1d8-1, comp... 44 0.46
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.46
4dbj|AP003250.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.46
5ref|XM_471544.1| Oryza sativa (japonica cultivar-group), predic... 40 7.2
6gb|AC167666.4| Culex pipiens quinquefasciatus, clone Culex pipie... 40 7.2
7emb|CR391930.9| Zebrafish DNA sequence from clone CH211-154B16 i... 40 7.2
8emb|BX927149.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 7.2
9emb|AL662975.3|OSJN00180 Oryza sativa genomic DNA, chromosome 4,... 40 7.2
10emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4,... 40 7.2
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
12gb|AF130462.1|AF130462 Corynebacterium glutamicum heptaprenyl di... 40 7.2
13dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 7.2

>ref|XM_550058.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 924

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 448 gccaacctgcacatcatcttgtacaactgcacgg 481
           ||||||||| || ||||||| |||||||||||||
Sbjct: 394 gccaacctgaacctcatcttctacaactgcacgg 427



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>gb|AC148592.10| Gasterosteus aculeatus clone uogacrs-1d8-1, complete sequence
          Length = 40753

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 412   tcagtcaaactgaacggcccgt 433
             ||||||||||||||||||||||
Sbjct: 24894 tcagtcaaactgaacggcccgt 24915



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 448     gccaacctgcacatcatcttgtacaactgcacgg 481
               ||||||||| || ||||||| |||||||||||||
Sbjct: 1988124 gccaacctgaacctcatcttctacaactgcacgg 1988157



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>dbj|AP003250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0443D08
          Length = 146670

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 448   gccaacctgcacatcatcttgtacaactgcacgg 481
             ||||||||| || ||||||| |||||||||||||
Sbjct: 50702 gccaacctgaacctcatcttctacaactgcacgg 50735



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>ref|XM_471544.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 699

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 110 tggccgaggaccagcaggggggag 133
           |||| |||||||||||||||||||
Sbjct: 453 tggctgaggaccagcaggggggag 430



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>gb|AC167666.4| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940120D9, complete sequence
          Length = 115819

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 434   tcaagatcgctccggccaacctgc 457
             |||||||||| |||||||||||||
Sbjct: 24687 tcaagatcgcgccggccaacctgc 24710



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>emb|CR391930.9| Zebrafish DNA sequence from clone CH211-154B16 in linkage group 15,
              complete sequence
          Length = 175972

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     tctcccagctgctgcagttt 65
              ||||||||||||||||||||
Sbjct: 118311 tctcccagctgctgcagttt 118292



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>emb|BX927149.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 2/10
          Length = 349887

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    ctcaacatctcttacgagaa 329
              ||||||||||||||||||||
Sbjct: 148311 ctcaacatctcttacgagaa 148292



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>emb|AL662975.3|OSJN00180 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071G03,
              complete sequence
          Length = 135169

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 110    tggccgaggaccagcaggggggag 133
              |||| |||||||||||||||||||
Sbjct: 130346 tggctgaggaccagcaggggggag 130369



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>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
             complete sequence
          Length = 185211

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 110   tggccgaggaccagcaggggggag 133
             |||| |||||||||||||||||||
Sbjct: 26677 tggctgaggaccagcaggggggag 26700



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 110      tggccgaggaccagcaggggggag 133
                |||| |||||||||||||||||||
Sbjct: 12201796 tggctgaggaccagcaggggggag 12201819



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>gb|AF130462.1|AF130462 Corynebacterium glutamicum heptaprenyl diphosphate synthetase (grcC)
            gene, partial cds; tRNA-Thr, tRNA-Thr, and tRNA-Trp
            genes, complete sequence; and SecE protein (secE),
            transcriptional antiterminator protein NusG (nusG), 50S
            ribosomal protein L11 (rplK), and 50S ribosomal protein
            L1 (rplA) genes, complete cds
          Length = 5245

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  ctcaacatctcttacgagaa 329
            ||||||||||||||||||||
Sbjct: 1565 ctcaacatctcttacgagaa 1546



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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    ctcaacatctcttacgagaa 329
              ||||||||||||||||||||
Sbjct: 496333 ctcaacatctcttacgagaa 496314


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,018,974
Number of Sequences: 3902068
Number of extensions: 4018974
Number of successful extensions: 71897
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71819
Number of HSP's gapped (non-prelim): 78
length of query: 532
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 509
effective length of database: 17,143,297,704
effective search space: 8725938531336
effective search space used: 8725938531336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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