Clone Name | basdl22 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_550058.1| Oryza sativa (japonica cultivar-group), mRNA Length = 924 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 448 gccaacctgcacatcatcttgtacaactgcacgg 481 ||||||||| || ||||||| ||||||||||||| Sbjct: 394 gccaacctgaacctcatcttctacaactgcacgg 427
>gb|AC148592.10| Gasterosteus aculeatus clone uogacrs-1d8-1, complete sequence Length = 40753 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcagtcaaactgaacggcccgt 433 |||||||||||||||||||||| Sbjct: 24894 tcagtcaaactgaacggcccgt 24915
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 448 gccaacctgcacatcatcttgtacaactgcacgg 481 ||||||||| || ||||||| ||||||||||||| Sbjct: 1988124 gccaacctgaacctcatcttctacaactgcacgg 1988157
>dbj|AP003250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443D08 Length = 146670 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 448 gccaacctgcacatcatcttgtacaactgcacgg 481 ||||||||| || ||||||| ||||||||||||| Sbjct: 50702 gccaacctgaacctcatcttctacaactgcacgg 50735
>ref|XM_471544.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 699 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 tggccgaggaccagcaggggggag 133 |||| ||||||||||||||||||| Sbjct: 453 tggctgaggaccagcaggggggag 430
>gb|AC167666.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940120D9, complete sequence Length = 115819 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 434 tcaagatcgctccggccaacctgc 457 |||||||||| ||||||||||||| Sbjct: 24687 tcaagatcgcgccggccaacctgc 24710
>emb|CR391930.9| Zebrafish DNA sequence from clone CH211-154B16 in linkage group 15, complete sequence Length = 175972 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 tctcccagctgctgcagttt 65 |||||||||||||||||||| Sbjct: 118311 tctcccagctgctgcagttt 118292
>emb|BX927149.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 2/10 Length = 349887 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ctcaacatctcttacgagaa 329 |||||||||||||||||||| Sbjct: 148311 ctcaacatctcttacgagaa 148292
>emb|AL662975.3|OSJN00180 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071G03, complete sequence Length = 135169 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 tggccgaggaccagcaggggggag 133 |||| ||||||||||||||||||| Sbjct: 130346 tggctgaggaccagcaggggggag 130369
>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05, complete sequence Length = 185211 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 tggccgaggaccagcaggggggag 133 |||| ||||||||||||||||||| Sbjct: 26677 tggctgaggaccagcaggggggag 26700
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 tggccgaggaccagcaggggggag 133 |||| ||||||||||||||||||| Sbjct: 12201796 tggctgaggaccagcaggggggag 12201819
>gb|AF130462.1|AF130462 Corynebacterium glutamicum heptaprenyl diphosphate synthetase (grcC) gene, partial cds; tRNA-Thr, tRNA-Thr, and tRNA-Trp genes, complete sequence; and SecE protein (secE), transcriptional antiterminator protein NusG (nusG), 50S ribosomal protein L11 (rplK), and 50S ribosomal protein L1 (rplA) genes, complete cds Length = 5245 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ctcaacatctcttacgagaa 329 |||||||||||||||||||| Sbjct: 1565 ctcaacatctcttacgagaa 1546
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ctcaacatctcttacgagaa 329 |||||||||||||||||||| Sbjct: 496333 ctcaacatctcttacgagaa 496314 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,018,974 Number of Sequences: 3902068 Number of extensions: 4018974 Number of successful extensions: 71897 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71819 Number of HSP's gapped (non-prelim): 78 length of query: 532 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 509 effective length of database: 17,143,297,704 effective search space: 8725938531336 effective search space used: 8725938531336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)