ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdj20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193353.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
3dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
4dbj|AK121218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
5dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.035
6dbj|AK071246.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.035
7gb|AF032695.1|AF032695 Oryza sativa NBS-LRR type resistance prot... 48 0.035
8gb|AC093876.3| Homo sapiens BAC clone RP11-631I21 from 4, comple... 46 0.14
9gb|AC117769.9| Mus musculus chromosome 19, clone RP24-511E21, co... 44 0.55
10gb|AC100209.13| Mus musculus chromosome 13, clone RP23-59L9, com... 44 0.55
11gb|AC154748.2| Mus musculus BAC clone RP23-116P6 from chromosome... 44 0.55
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
13dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
14gb|AF087521.1|AF087521 Triticum aestivum resistance protein (RGA... 44 0.55
15gb|AY231476.1| Ctenopharyngodon idella glucose transporter X (gl... 42 2.2
16emb|AL662982.3|OSJN00184 Oryza sativa genomic DNA, chromosome 4,... 42 2.2
17emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica ser... 42 2.2
18gb|AF250878.1| Salmonella typhi R27 plasmid complete sequence 42 2.2
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
20gb|AC160949.1| Oryza sativa (japonica cultivar-group) BAC clone ... 42 2.2
21dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 42 2.2
22emb|AL772270.24| Mouse DNA sequence from clone RP23-272I16 on ch... 42 2.2
23emb|CR848047.6| Zebrafish DNA sequence from clone DKEY-235H8 in ... 42 2.2
24emb|AL671854.14| Mouse DNA sequence from clone RP23-89M15 on chr... 42 2.2
25ref|NM_030709.1| Mus musculus transmembrane protease, serine 5 (... 40 8.6
26gb|AC124027.2| Mus musculus chromosome X clone RP21-282L18 map q... 40 8.6
27gb|AC124026.2| Mus musculus chromosome X clone RP21-564N13 map q... 40 8.6
28gb|AC124020.2| Mus musculus chromosome X clone RP21-564N13 map q... 40 8.6
29gb|AC148824.5| Pan troglodytes BAC clone CH251-507H8 from chromo... 40 8.6
30gb|AC131301.9| Mus musculus chromosome 14, clone RP24-70B5, comp... 40 8.6
31gb|AC104073.3| Homo sapiens BAC clone RP11-328P23 from 7, comple... 40 8.6
32gb|AC073107.7| Homo sapiens BAC clone RP11-479O9 from 7, complet... 40 8.6
33gb|AC104057.4| Homo sapiens BAC clone RP13-157F18 from 7, comple... 40 8.6
34emb|AL691520.7| Human DNA sequence from clone RP11-520E6 on chro... 40 8.6
35gb|AC183543.3| Pan troglodytes BAC clone CH251-299H22 from chrom... 40 8.6
36emb|AJ004935.1|UCAJ4935 Urechis caupo mRNA for cytoplasmic inter... 40 8.6
37emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome;... 40 8.6
38emb|CR392367.6| Zebrafish DNA sequence from clone CH211-144A4 in... 40 8.6
39dbj|AK096604.1| Homo sapiens cDNA FLJ39285 fis, clone OCBBF2011767 40 8.6
40gb|AC149226.11| Danio rerio clone ch211-252j18, complete sequence 40 8.6
41gb|AC109462.2| Homo sapiens chromosome 16 clone RP11-26L20, comp... 40 8.6
42gb|AC092503.2| Homo sapiens chromosome 3 clone RP11-539L2, compl... 40 8.6
43ref|XM_682297.1| PREDICTED: Danio rerio similar to Nesprin 2 (Nu... 40 8.6
44gb|AC154263.2| Mus musculus BAC clone RP24-308C1 from chromosome... 40 8.6
45dbj|AK029714.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 8.6
46gb|AC159825.2| Mus musculus BAC clone RP23-100J21 from chromosom... 40 8.6
47gb|AF290508.1|AF290508 Human astrovirus type 7 non-structural pr... 40 8.6
48gb|AC009165.6|AC009165 Homo sapiens chromosome 16 clone RP11-7O2... 40 8.6
49gb|AC158338.1| Homo sapiens chromosome 3 clone WI2-3321H1, compl... 40 8.6
50gb|AC092611.3| Homo sapiens BAC clone RP11-164P12 from 4, comple... 40 8.6
51gb|AC092722.5| Homo sapiens chromosome 16 clone RP11-517M14, com... 40 8.6
52gb|AY150646.1| Zea mays fertilization-independent endosperm prot... 40 8.6
53dbj|AP004325.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
54emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in... 40 8.6
55emb|AJ250974.1|MMU250974 Mus musculus partial Dkc1 gene for dysk... 40 8.6
56dbj|AP002812.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.6
57gb|AC116683.7| Mus musculus chromosome 7, clone RP24-472H13, com... 40 8.6
58gb|AC134337.3| Mus musculus BAC clone RP23-252I24 from 8, comple... 40 8.6
59emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in li... 40 8.6
60emb|AL663113.7| Mouse DNA sequence from clone RP23-207B22 on chr... 40 8.6
61emb|AL808110.7| Mouse DNA sequence from clone RP23-62O13 on chro... 40 8.6
62emb|AL589870.30| Mouse DNA sequence from clone RP23-118A2 on chr... 40 8.6
63dbj|AB016230.1| Mus musculus mRNA for type 3 spinesin, complete cds 40 8.6
64dbj|AB016229.1| Mus musculus mRNA for type 2 spinesin, complete cds 40 8.6
65dbj|AB016423.1| Mus musculus mRNA for type 1 spinesin, complete cds 40 8.6
66dbj|AB041037.1| Mus musculus mRNA for type 4 spinesin, complete cds 40 8.6 
>ref|NM_193353.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2718

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 211  ttcatgggatttgttctgcaaagaagcattttggaa 246
            ||||||| | ||||||||||||||||||||||||||
Sbjct: 972  ttcatggcagttgttctgcaaagaagcattttggaa 1007
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 211      ttcatgggatttgttctgcaaagaagcattttggaa 246
                ||||||| | ||||||||||||||||||||||||||
Sbjct: 20326217 ttcatggcagttgttctgcaaagaagcattttggaa 20326252



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 581      agaagtgaaacaagaacagaggaa 604
                ||||||||||||||||||||||||
Sbjct: 17972212 agaagtgaaacaagaacagaggaa 17972189
to top
>dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0026J14
          Length = 163496

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 211   ttcatgggatttgttctgcaaagaagcattttggaa 246
             ||||||| | ||||||||||||||||||||||||||
Sbjct: 92250 ttcatggcagttgttctgcaaagaagcattttggaa 92285
to top
>dbj|AK121218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090D06, full
            insert sequence
          Length = 4933

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 211  ttcatgggatttgttctgcaaagaagcattttggaa 246
            ||||||| | ||||||||||||||||||||||||||
Sbjct: 1318 ttcatggcagttgttctgcaaagaagcattttggaa 1353
to top
>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0520B06
          Length = 142667

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 581   agaagtgaaacaagaacagaggaa 604
             ||||||||||||||||||||||||
Sbjct: 92047 agaagtgaaacaagaacagaggaa 92024
to top
>dbj|AK071246.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C07, full
            insert sequence
          Length = 1416

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 581  agaagtgaaacaagaacagaggaa 604
            ||||||||||||||||||||||||
Sbjct: 1179 agaagtgaaacaagaacagaggaa 1202
to top
>gb|AF032695.1|AF032695 Oryza sativa NBS-LRR type resistance protein (r8) gene, partial cds
          Length = 531

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 209 cattcatgggatttgttctgcaaagaagcattttggaaaa 248
           ||||||||||| || |||||||| |||||||| |||||||
Sbjct: 409 cattcatgggaattattctgcaaggaagcattctggaaaa 448
to top
>gb|AC093876.3| Homo sapiens BAC clone RP11-631I21 from 4, complete sequence
          Length = 183972

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 80    tttgaaatccgtgatgcatttgc 102
             |||||||||||||||||||||||
Sbjct: 32388 tttgaaatccgtgatgcatttgc 32410
to top
>gb|AC117769.9| Mus musculus chromosome 19, clone RP24-511E21, complete sequence
          Length = 218248

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 590    acaagaacagaggaagaaatcgctga 615
              ||||| ||||||||||||||||||||
Sbjct: 134539 acaagcacagaggaagaaatcgctga 134564
to top
>gb|AC100209.13| Mus musculus chromosome 13, clone RP23-59L9, complete sequence
          Length = 215769

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 600    aggaagaaatcgctgaggatta 621
              ||||||||||||||||||||||
Sbjct: 186106 aggaagaaatcgctgaggatta 186085
to top
>gb|AC154748.2| Mus musculus BAC clone RP23-116P6 from chromosome 13, complete
            sequence
          Length = 203908

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 600  aggaagaaatcgctgaggatta 621
            ||||||||||||||||||||||
Sbjct: 3327 aggaagaaatcgctgaggatta 3306
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 213      catgggatttgttctgcaaagaagcattttggaa 246
                |||||||||||||||| ||||| ||||| |||||
Sbjct: 17367407 catgggatttgttctgtaaagaggcattctggaa 17367440



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 215      tgggatttgttctgcaaagaagcattttggaa 246
                |||||| ||||||| ||||| |||||||||||
Sbjct: 12899807 tgggatctgttctgtaaagaggcattttggaa 12899776
to top
>dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0596H06
          Length = 142832

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 213    catgggatttgttctgcaaagaagcattttggaa 246
              |||||||||||||||| ||||| ||||| |||||
Sbjct: 104000 catgggatttgttctgtaaagaggcattctggaa 104033
to top
>gb|AF087521.1|AF087521 Triticum aestivum resistance protein (RGA4) gene, partial cds
          Length = 525

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 213 catgggatttgttctgcaaagaagcattttggaa 246
           |||||||| ||||||| ||||| |||||||||||
Sbjct: 407 catgggatctgttctgtaaagaggcattttggaa 440
to top
>gb|AY231476.1| Ctenopharyngodon idella glucose transporter X (glutX) gene, complete
             cds
          Length = 16431

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 373   ttatgaatgggagaaagtgca 393
             |||||||||||||||||||||
Sbjct: 15885 ttatgaatgggagaaagtgca 15905
to top
>emb|AL662982.3|OSJN00184 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083I11,
             complete sequence
          Length = 149085

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 533   agaaggaagatgctgatcagattct 557
             ||||||||||||||||| |||||||
Sbjct: 82503 agaaggaagatgctgatgagattct 82527
to top
>emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1
          Length = 218160

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 89     cgtgatgcatttgctggtgga 109
              |||||||||||||||||||||
Sbjct: 101964 cgtgatgcatttgctggtgga 101984
to top
>gb|AF250878.1| Salmonella typhi R27 plasmid complete sequence
          Length = 180461

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 89     cgtgatgcatttgctggtgga 109
              |||||||||||||||||||||
Sbjct: 163349 cgtgatgcatttgctggtgga 163329
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 533     agaaggaagatgctgatcagattct 557
               ||||||||||||||||| |||||||
Sbjct: 7436150 agaaggaagatgctgatgagattct 7436174
to top
>gb|AC160949.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0006E22,
             complete sequence
          Length = 128256

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 209   cattcatgggatttgttctgcaaagaagcattttgga 245
             ||||||||||| || |||||||| |||||||| ||||
Sbjct: 34436 cattcatgggaattattctgcaaggaagcattctgga 34400
to top
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 594     gaacagaggaagaaatcgctg 614
               |||||||||||||||||||||
Sbjct: 1566635 gaacagaggaagaaatcgctg 1566655
to top
>emb|AL772270.24| Mouse DNA sequence from clone RP23-272I16 on chromosome 4, complete
             sequence
          Length = 146140

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 587   gaaacaagaacagaggaagaa 607
             |||||||||||||||||||||
Sbjct: 63839 gaaacaagaacagaggaagaa 63859
to top
>emb|CR848047.6| Zebrafish DNA sequence from clone DKEY-235H8 in linkage group 16,
             complete sequence
          Length = 166830

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 373   ttatgaatgggagaaagtgca 393
             |||||||||||||||||||||
Sbjct: 77664 ttatgaatgggagaaagtgca 77644
to top
>emb|AL671854.14| Mouse DNA sequence from clone RP23-89M15 on chromosome 3, complete
             sequence
          Length = 207265

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 231   aagaagcattttggaaaatggaaga 255
             |||| ||||||||||||||||||||
Sbjct: 67807 aagaggcattttggaaaatggaaga 67783
to top
>ref|NM_030709.1| Mus musculus transmembrane protease, serine 5 (spinesin) (Tmprss5),
            mRNA
          Length = 2047

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 516  cagaggtctacagggtcagaagga 539
            |||||||||||||||| |||||||
Sbjct: 1937 cagaggtctacagggtaagaagga 1960
to top
>gb|AC124027.2| Mus musculus chromosome X clone RP21-282L18 map qA7.2, complete sequence
          Length = 147432

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 581    agaagtgaaacaagaacaga 600
              ||||||||||||||||||||
Sbjct: 105898 agaagtgaaacaagaacaga 105879
to top
>gb|AC124026.2| Mus musculus chromosome X clone RP21-564N13 map qA7.2, complete
             sequence
          Length = 178239

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 581   agaagtgaaacaagaacaga 600
             ||||||||||||||||||||
Sbjct: 79270 agaagtgaaacaagaacaga 79251
to top
>gb|AC124020.2| Mus musculus chromosome X clone RP21-564N13 map qA7.2, complete
             sequence
          Length = 155466

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 581   agaagtgaaacaagaacaga 600
             ||||||||||||||||||||
Sbjct: 71326 agaagtgaaacaagaacaga 71307
to top
>gb|AC148824.5| Pan troglodytes BAC clone CH251-507H8 from chromosome 7, complete
              sequence
          Length = 189932

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 550    cagattctgggtatcagagg 569
              ||||||||||||||||||||
Sbjct: 157415 cagattctgggtatcagagg 157396
to top
>gb|AC131301.9| Mus musculus chromosome 14, clone RP24-70B5, complete sequence
          Length = 236224

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 588    aaacaagaacagaggaagaa 607
              ||||||||||||||||||||
Sbjct: 211192 aaacaagaacagaggaagaa 211211
to top
>gb|AC104073.3| Homo sapiens BAC clone RP11-328P23 from 7, complete sequence
          Length = 178670

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   cagattctgggtatcagagg 569
             ||||||||||||||||||||
Sbjct: 64124 cagattctgggtatcagagg 64105
to top
>gb|AC073107.7| Homo sapiens BAC clone RP11-479O9 from 7, complete sequence
          Length = 194178

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   cagattctgggtatcagagg 569
             ||||||||||||||||||||
Sbjct: 79964 cagattctgggtatcagagg 79945
to top
>gb|AC104057.4| Homo sapiens BAC clone RP13-157F18 from 7, complete sequence
          Length = 196523

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 550    cagattctgggtatcagagg 569
              ||||||||||||||||||||
Sbjct: 160359 cagattctgggtatcagagg 160340
to top
>emb|AL691520.7| Human DNA sequence from clone RP11-520E6 on chromosome 1 Contains the
             5' end of a novel gene, complete sequence
          Length = 201493

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   tcctattctgtagtttgttc 514
             ||||||||||||||||||||
Sbjct: 19558 tcctattctgtagtttgttc 19539
to top
>gb|AC183543.3| Pan troglodytes BAC clone CH251-299H22 from chromosome 11, complete
             sequence
          Length = 195721

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   cagattctgggtatcagagg 569
             ||||||||||||||||||||
Sbjct: 99787 cagattctgggtatcagagg 99768
to top
>emb|AJ004935.1|UCAJ4935 Urechis caupo mRNA for cytoplasmic intermediate filament protein
          Length = 2019

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttcggcacgagggcgaagtt 20
          ||||||||||||||||||||
Sbjct: 74 ttcggcacgagggcgaagtt 93
to top
>emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome; segment 1/7
          Length = 349391

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 546   tgatcagattctgggtatca 565
             ||||||||||||||||||||
Sbjct: 32747 tgatcagattctgggtatca 32728
to top
>emb|CR392367.6| Zebrafish DNA sequence from clone CH211-144A4 in linkage group 24,
              complete sequence
          Length = 167553

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     catcttggatgacctatggg 65
              ||||||||||||||||||||
Sbjct: 143684 catcttggatgacctatggg 143703
to top
>dbj|AK096604.1| Homo sapiens cDNA FLJ39285 fis, clone OCBBF2011767
          Length = 3276

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 550 cagattctgggtatcagagg 569
           ||||||||||||||||||||
Sbjct: 472 cagattctgggtatcagagg 491
to top
>gb|AC149226.11| Danio rerio clone ch211-252j18, complete sequence
          Length = 154059

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 379  atgggagaaagtgcataaag 398
            ||||||||||||||||||||
Sbjct: 4310 atgggagaaagtgcataaag 4329
to top
>gb|AC109462.2| Homo sapiens chromosome 16 clone RP11-26L20, complete sequence
          Length = 174191

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     aatgtttggtttgaaatccg 90
              ||||||||||||||||||||
Sbjct: 135765 aatgtttggtttgaaatccg 135784
to top
>gb|AC092503.2| Homo sapiens chromosome 3 clone RP11-539L2, complete sequence
          Length = 195568

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 574    cattaaaagaagtgaaacaagaac 597
              |||||| |||||||||||||||||
Sbjct: 161116 cattaacagaagtgaaacaagaac 161093
to top
>ref|XM_682297.1| PREDICTED: Danio rerio similar to Nesprin 2 (Nuclear envelope
           spectrin repeat protein 2) (Syne-2) (Synaptic nuclear
           envelope protein 2) (Nucleus and actin connecting
           element protein) (NUANCE protein) (LOC559003), mRNA
          Length = 5686

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 473 tcacacaacttaaagaactg 492
           ||||||||||||||||||||
Sbjct: 809 tcacacaacttaaagaactg 828
to top
>gb|AC154263.2| Mus musculus BAC clone RP24-308C1 from chromosome 14, complete sequence
          Length = 196901

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 588    aaacaagaacagaggaagaa 607
              ||||||||||||||||||||
Sbjct: 172851 aaacaagaacagaggaagaa 172832
to top
>dbj|AK029714.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930502G17 product:transmembrane protease,
            serine 5 (spinesin), full insert sequence
          Length = 2895

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 516  cagaggtctacagggtcagaagga 539
            |||||||||||||||| |||||||
Sbjct: 2785 cagaggtctacagggtaagaagga 2808
to top
>gb|AC159825.2| Mus musculus BAC clone RP23-100J21 from chromosome 9, complete sequence
          Length = 209633

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 516   cagaggtctacagggtcagaagga 539
             |||||||||||||||| |||||||
Sbjct: 52427 cagaggtctacagggtaagaagga 52450
to top
>gb|AF290508.1|AF290508 Human astrovirus type 7 non-structural protein gene, partial cds
          Length = 246

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 78 ggtttgaaatccgtgatgca 97
          ||||||||||||||||||||
Sbjct: 45 ggtttgaaatccgtgatgca 64
to top
>gb|AC009165.6|AC009165 Homo sapiens chromosome 16 clone RP11-7O2, complete sequence
          Length = 152225

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    aatgtttggtttgaaatccg 90
             ||||||||||||||||||||
Sbjct: 86534 aatgtttggtttgaaatccg 86553
to top
>gb|AC158338.1| Homo sapiens chromosome 3 clone WI2-3321H1, complete sequence
          Length = 43051

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 574   cattaaaagaagtgaaacaagaac 597
             |||||| |||||||||||||||||
Sbjct: 36171 cattaacagaagtgaaacaagaac 36194
to top
>gb|AC092611.3| Homo sapiens BAC clone RP11-164P12 from 4, complete sequence
          Length = 141194

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 573   tcattaaaagaagtgaaaca 592
             ||||||||||||||||||||
Sbjct: 90364 tcattaaaagaagtgaaaca 90345
to top
>gb|AC092722.5| Homo sapiens chromosome 16 clone RP11-517M14, complete sequence
          Length = 189822

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    aatgtttggtttgaaatccg 90
             ||||||||||||||||||||
Sbjct: 97093 aatgtttggtttgaaatccg 97074
to top
>gb|AY150646.1| Zea mays fertilization-independent endosperm protein 2 gene, complete
            cds
          Length = 10821

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 378  aatgggagaaagtgcataaagatattga 405
            ||||||||||| |||||||| |||||||
Sbjct: 2411 aatgggagaaaatgcataaatatattga 2384
to top
>dbj|AP004325.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1230_H04
          Length = 123818

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 215   tgggatttgttctgcaaagaagcattttggaa 246
             |||||| ||||||| ||||| |||||||||||
Sbjct: 72294 tgggatctgttctgtaaagaggcattttggaa 72263
to top
>emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in linkage group 24,
              complete sequence
          Length = 208279

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     catcttggatgacctatggg 65
              ||||||||||||||||||||
Sbjct: 184294 catcttggatgacctatggg 184275
to top
>emb|AJ250974.1|MMU250974 Mus musculus partial Dkc1 gene for dyskerin, exons 4-5
          Length = 690

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 581 agaagtgaaacaagaacaga 600
           ||||||||||||||||||||
Sbjct: 641 agaagtgaaacaagaacaga 622
to top
>dbj|AP002812.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-91P24, complete
             sequences
          Length = 169250

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 550   cagattctgggtatcagagg 569
             ||||||||||||||||||||
Sbjct: 77130 cagattctgggtatcagagg 77149
to top
>gb|AC116683.7| Mus musculus chromosome 7, clone RP24-472H13, complete sequence
          Length = 126085

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 592   aagaacagaggaagaaatcg 611
             ||||||||||||||||||||
Sbjct: 57787 aagaacagaggaagaaatcg 57768
to top
>gb|AC134337.3| Mus musculus BAC clone RP23-252I24 from 8, complete sequence
          Length = 169201

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    aatgtttggtttgaaatccg 90
             ||||||||||||||||||||
Sbjct: 91315 aatgtttggtttgaaatccg 91296
to top
>emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in linkage group 15,
             complete sequence
          Length = 224998

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   atgggagaaagtgcataaag 398
             ||||||||||||||||||||
Sbjct: 91126 atgggagaaagtgcataaag 91107
to top
>emb|AL663113.7| Mouse DNA sequence from clone RP23-207B22 on chromosome X, complete
             sequence
          Length = 180424

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   cattagaaagccagcattca 214
             ||||||||||||||||||||
Sbjct: 11875 cattagaaagccagcattca 11856
to top
>emb|AL808110.7| Mouse DNA sequence from clone RP23-62O13 on chromosome X, complete
             sequence
          Length = 175963

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 581   agaagtgaaacaagaacaga 600
             ||||||||||||||||||||
Sbjct: 49204 agaagtgaaacaagaacaga 49185
to top
>emb|AL589870.30| Mouse DNA sequence from clone RP23-118A2 on chromosome 2, complete
              sequence
          Length = 202686

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 589    aacaagaacagaggaagaaa 608
              ||||||||||||||||||||
Sbjct: 108391 aacaagaacagaggaagaaa 108410
to top
>dbj|AB016230.1| Mus musculus mRNA for type 3 spinesin, complete cds
          Length = 2047

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 516  cagaggtctacagggtcagaagga 539
            |||||||||||||||| |||||||
Sbjct: 1937 cagaggtctacagggtaagaagga 1960
to top
>dbj|AB016229.1| Mus musculus mRNA for type 2 spinesin, complete cds
          Length = 2045

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 516  cagaggtctacagggtcagaagga 539
            |||||||||||||||| |||||||
Sbjct: 1935 cagaggtctacagggtaagaagga 1958
to top
>dbj|AB016423.1| Mus musculus mRNA for type 1 spinesin, complete cds
          Length = 1662

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 516  cagaggtctacagggtcagaagga 539
            |||||||||||||||| |||||||
Sbjct: 1552 cagaggtctacagggtaagaagga 1575
to top
>dbj|AB041037.1| Mus musculus mRNA for type 4 spinesin, complete cds
          Length = 2027

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 516  cagaggtctacagggtcagaagga 539
            |||||||||||||||| |||||||
Sbjct: 1894 cagaggtctacagggtaagaagga 1917


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,056,196
Number of Sequences: 3902068
Number of extensions: 6056196
Number of successful extensions: 140863
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140495
Number of HSP's gapped (non-prelim): 368
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top