Clone Name | basdm18 |
---|---|
Clone Library Name | barley_pub |
>PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC| 3.1.3.2) (PAP) Length = 469 Score = 58.2 bits (139), Expect = 1e-08 Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Frame = +1 Query: 256 QVRITQGNH--GSTIITCVTTVKPGSSNVLYMT*EDNLNCSAKGNHLQYTFYKYTSRYIH 429 QV +TQGNH II+ VT VKPGS V Y + A+ Y F+ YTS YIH Sbjct: 62 QVHVTQGNHEGNGVIISWVTPVKPGSKTVQYWCENEKSRKQAEATVNTYRFFNYTSGYIH 121 Query: 430 HCAIKKLK 453 HC I L+ Sbjct: 122 HCLIDDLE 129
>PPAF_PHAVU (P80366) Iron(III)-zinc(II) purple acid phosphatase (EC 3.1.3.2)| (PAP) Length = 432 Score = 51.6 bits (122), Expect = 1e-06 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Frame = +1 Query: 256 QVRITQGN--HGSTIITCVTTVKPGSSNVLYMT*EDNLNCSAKGNHLQYTFYKYTSRYIH 429 QV ITQG+ + II+ VT +PGSS V Y + ++ AKG Y F+ Y+S +IH Sbjct: 29 QVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIH 88 Query: 430 HCAIKKLK 453 H I+KLK Sbjct: 89 HTTIRKLK 96
>PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.2)| (Manganese(II) purple acid phosphatase) Length = 464 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Frame = +1 Query: 256 QVRITQGN--HGSTIITCVTTVKPGSSNVLYMT*EDNLNCSAKGNHLQYTFYKYTSRYIH 429 QV ITQG+ + I++ VT +PGSS V Y + + A+G + Y F+ Y+S +IH Sbjct: 56 QVHITQGDLVGKAVIVSWVTVDEPGSSEVHYWSENSDKKKIAEGKLVTYRFFNYSSGFIH 115 Query: 430 HCAIKKLK 453 H I+ L+ Sbjct: 116 HTTIRNLE 123
>GLUQ_BORBR (Q7WDN0) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)| Length = 319 Score = 29.6 bits (65), Expect = 5.5 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +2 Query: 95 PGRCGPPLLAGRAPRSWRGLSSPGIE 172 PG C L AGR R+WR PG+E Sbjct: 140 PGTCREGLPAGRQARAWRVRVPPGVE 165
>ENV_SIVVG (P27977) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 877 Score = 28.9 bits (63), Expect = 9.3 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Frame = +3 Query: 267 HTRQPWQYNNHMCD-NSQTWIK 329 HT PWQ+NN D N+ TW++ Sbjct: 636 HTTVPWQWNNRTPDWNNMTWLE 657
>ZAR1_RAT (Q7TSX9) Zygote arrest 1 (Oocyte-specific maternal effect factor)| Length = 361 Score = 28.9 bits (63), Expect = 9.3 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 2/20 (10%) Frame = +2 Query: 95 PGRCGP--PLLAGRAPRSWR 148 PG C P P AGR PRSWR Sbjct: 111 PGSCQPRSPARAGRPPRSWR 130
>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1853 Score = 28.9 bits (63), Expect = 9.3 Identities = 19/48 (39%), Positives = 25/48 (52%) Frame = -3 Query: 145 PRPWSSPCEQWRPTSTWKDFTPPHWIPSSCVPVRCRPTLASYLPRSSD 2 PR +SSP Q+ PTS T P + PSS + PT +Y P +D Sbjct: 1771 PRAFSSP--QYSPTSPTYSPTSPSYTPSS---PQYSPTSPTYTPSPAD 1813 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,431,110 Number of Sequences: 219361 Number of extensions: 1598777 Number of successful extensions: 3905 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3744 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3904 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)