ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdm18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase p... 58 1e-08
2PPAF_PHAVU (P80366) Iron(III)-zinc(II) purple acid phosphatase (... 52 1e-06
3PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.... 48 2e-05
4GLUQ_BORBR (Q7WDN0) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-)... 30 5.5
5ENV_SIVVG (P27977) Envelope polyprotein GP160 precursor [Contain... 29 9.3
6ZAR1_RAT (Q7TSX9) Zygote arrest 1 (Oocyte-specific maternal effe... 29 9.3
7RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subun... 29 9.3

>PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC|
           3.1.3.2) (PAP)
          Length = 469

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = +1

Query: 256 QVRITQGNH--GSTIITCVTTVKPGSSNVLYMT*EDNLNCSAKGNHLQYTFYKYTSRYIH 429
           QV +TQGNH     II+ VT VKPGS  V Y    +     A+     Y F+ YTS YIH
Sbjct: 62  QVHVTQGNHEGNGVIISWVTPVKPGSKTVQYWCENEKSRKQAEATVNTYRFFNYTSGYIH 121

Query: 430 HCAIKKLK 453
           HC I  L+
Sbjct: 122 HCLIDDLE 129



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>PPAF_PHAVU (P80366) Iron(III)-zinc(II) purple acid phosphatase (EC 3.1.3.2)|
           (PAP)
          Length = 432

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
 Frame = +1

Query: 256 QVRITQGN--HGSTIITCVTTVKPGSSNVLYMT*EDNLNCSAKGNHLQYTFYKYTSRYIH 429
           QV ITQG+    + II+ VT  +PGSS V Y + ++     AKG    Y F+ Y+S +IH
Sbjct: 29  QVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIH 88

Query: 430 HCAIKKLK 453
           H  I+KLK
Sbjct: 89  HTTIRKLK 96



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>PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.2)|
           (Manganese(II) purple acid phosphatase)
          Length = 464

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = +1

Query: 256 QVRITQGN--HGSTIITCVTTVKPGSSNVLYMT*EDNLNCSAKGNHLQYTFYKYTSRYIH 429
           QV ITQG+    + I++ VT  +PGSS V Y +   +    A+G  + Y F+ Y+S +IH
Sbjct: 56  QVHITQGDLVGKAVIVSWVTVDEPGSSEVHYWSENSDKKKIAEGKLVTYRFFNYSSGFIH 115

Query: 430 HCAIKKLK 453
           H  I+ L+
Sbjct: 116 HTTIRNLE 123



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>GLUQ_BORBR (Q7WDN0) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)|
          Length = 319

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 95  PGRCGPPLLAGRAPRSWRGLSSPGIE 172
           PG C   L AGR  R+WR    PG+E
Sbjct: 140 PGTCREGLPAGRQARAWRVRVPPGVE 165



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>ENV_SIVVG (P27977) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 877

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 267 HTRQPWQYNNHMCD-NSQTWIK 329
           HT  PWQ+NN   D N+ TW++
Sbjct: 636 HTTVPWQWNNRTPDWNNMTWLE 657



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>ZAR1_RAT (Q7TSX9) Zygote arrest 1 (Oocyte-specific maternal effect factor)|
          Length = 361

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = +2

Query: 95  PGRCGP--PLLAGRAPRSWR 148
           PG C P  P  AGR PRSWR
Sbjct: 111 PGSCQPRSPARAGRPPRSWR 130



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>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -3

Query: 145  PRPWSSPCEQWRPTSTWKDFTPPHWIPSSCVPVRCRPTLASYLPRSSD 2
            PR +SSP  Q+ PTS     T P + PSS    +  PT  +Y P  +D
Sbjct: 1771 PRAFSSP--QYSPTSPTYSPTSPSYTPSS---PQYSPTSPTYTPSPAD 1813


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,431,110
Number of Sequences: 219361
Number of extensions: 1598777
Number of successful extensions: 3905
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3904
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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