ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdm02 |
|---|---|
| Clone Library Name | barley_pub |
>CR14_HORVU (P26154) Cold-regulated protein BLT14| Length = 88 Score = 141 bits (355), Expect = 1e-33 Identities = 66/78 (84%), Positives = 67/78 (85%) Frame = +2 Query: 68 ATGGARVMRRAGAEREGCSDTXXXXXXXXXXLQGFGLASAGGNRYRNKHHYRPAGGDPWD 247 ATGGARVMRRAG EREGCSDT LQGFGLA+AGGNRYRNKHHYRPAGGDPWD Sbjct: 11 ATGGARVMRRAGREREGCSDTRCRCQRWRRRLQGFGLAAAGGNRYRNKHHYRPAGGDPWD 70 Query: 248 PCYRPMIISTSCAGATRS 301 PCYRPMIISTSCAGATRS Sbjct: 71 PCYRPMIISTSCAGATRS 88
>CR2_HORVU (P23252) Cold-regulated protein 2 (Fragment)| Length = 202 Score = 79.7 bits (195), Expect = 4e-15 Identities = 50/119 (42%), Positives = 57/119 (47%), Gaps = 31/119 (26%) Frame = +2 Query: 38 NGKESRRRAPATGGARVMRRAGAEREGCSDTXXXXXXXXXXLQGFGLAS----------- 184 NGK SRRRAPA+G ARV+RR GAEREGCSDT +QG+G+A Sbjct: 85 NGKVSRRRAPASGAARVLRREGAEREGCSDTRCRCRRRRRRVQGYGVAGLASCDAPHDPD 144 Query: 185 --------------------AGGNRYRNKHHYRPAGGDPWDPCYRPMIISTSCAGATRS 301 A GN Y ++HYRP GG PC PMIIST RS Sbjct: 145 APHGTDAPHTPDAPYGSDSPATGNHYGYQYHYRPGGGASGGPC-SPMIISTCTVYVPRS 202
>SC24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-related protein C)| Length = 1094 Score = 32.3 bits (72), Expect = 0.75 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = -1 Query: 424 EINTDDS*Y-RRSVPNMDMSETSAFFFLAVLPI 329 E+ TDD Y R+ V +MD++ET+ FF+ +LP+ Sbjct: 922 EVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPL 954
>FUT4_RAT (Q62994) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 433 Score = 30.0 bits (66), Expect = 3.7 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 8/51 (15%) Frame = +1 Query: 118 LQRHTVPVPAVASATPRLWTCLCWGE--PVPEQAPLPAR------WW*SLG 246 L R + + A L CLCWG+ P+P +P P R WW G Sbjct: 50 LPRTSSGLAAAGLLCTALTACLCWGQLPPLPWASPAPQRPVSVLLWWEPFG 100
>ERC2_RAT (Q8K3M6) ERC protein 2 (CAZ-associated structural protein 1)| (CAST1) (Cast) (Cytomatrix protein p110) Length = 957 Score = 30.0 bits (66), Expect = 3.7 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -3 Query: 251 RDPRDHHQRAGNGACSGTGSP-QQRQVQSLGVADATAG 141 R PR H+R +G GTG +QSL A AT+G Sbjct: 23 RSPRLGHRRTSSGGGGGTGKTLSMENIQSLNAAYATSG 60
>ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural protein 1)| (CAST1) Length = 957 Score = 30.0 bits (66), Expect = 3.7 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -3 Query: 251 RDPRDHHQRAGNGACSGTGSP-QQRQVQSLGVADATAG 141 R PR H+R +G GTG +QSL A AT+G Sbjct: 23 RSPRLGHRRTSSGGGGGTGKTLSMENIQSLNAAYATSG 60
>ERC2_HUMAN (O15083) ERC protein 2| Length = 957 Score = 30.0 bits (66), Expect = 3.7 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -3 Query: 251 RDPRDHHQRAGNGACSGTGSP-QQRQVQSLGVADATAG 141 R PR H+R +G GTG +QSL A AT+G Sbjct: 23 RSPRLGHRRTSSGGGGGTGKTLSMENIQSLNAAYATSG 60
>IE18_PRVKA (P33479) Immediate-early protein IE180| Length = 1446 Score = 29.3 bits (64), Expect = 6.4 Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 6/81 (7%) Frame = +2 Query: 41 GKESRRRAPATGGARVMRRAGAEREGCSDTXXXXXXXXXXLQGFGLASAGGNRYRNKHHY 220 G +R R PA A R G + G G SAGG+R R+ H + Sbjct: 202 GPAARPRTPAPPAQPAAVAAAPARRGPASPASPAAGPVSAPGGGGAPSAGGDRGRHHHQH 261 Query: 221 R------PAGGDPWDPCYRPM 265 R PA DP RP+ Sbjct: 262 REPLLDEPAAARRLDP--RPL 280
>GCNL2_HUMAN (Q92830) General control of amino acid synthesis protein 5-like 2| (EC 2.3.1.48) (Histone acetyltransferase GCN5) (hsGCN5) (STAF97) Length = 837 Score = 29.3 bits (64), Expect = 6.4 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -3 Query: 254 SRDPRDHHQRAGNGACSGTGSPQQRQVQSLGVADATAGTGTVCRCN 117 +R QRA G P+ ++++ LGV A GT C+CN Sbjct: 77 ARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANGT-CKCN 121
>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth factor-like domains 2) (Epidermal growth factor-like 1) Length = 3312 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = +2 Query: 191 GNRYRNKHHYRPAGGDPWDPCYRPMIISTSCAGATRS*SSPC 316 G + + HYRP G D PC + STS + A S PC Sbjct: 2057 GQCHCKEFHYRPRGSDSCLPCDCYPVGSTSRSCAPHSGQCPC 2098
>CELR3_RAT (O88278) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Multiple epidermal growth factor-like domains 2) Length = 3313 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = +2 Query: 191 GNRYRNKHHYRPAGGDPWDPCYRPMIISTSCAGATRS*SSPC 316 G + + HYRP G D PC + STS + A S PC Sbjct: 2048 GQCHCKEFHYRPRGSDSCLPCDCYPVGSTSRSCAPHSGQCPC 2089
>CELR3_MOUSE (Q91ZI0) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| Length = 3301 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = +2 Query: 191 GNRYRNKHHYRPAGGDPWDPCYRPMIISTSCAGATRS*SSPC 316 G + + HYRP G D PC + STS + A S PC Sbjct: 2046 GQCHCKEFHYRPRGSDSCLPCDCYPVGSTSRSCAPHSGQCPC 2087 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,382,404 Number of Sequences: 219361 Number of extensions: 1564262 Number of successful extensions: 4289 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4004 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4280 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
