ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdm12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GCP3_HUMAN (Q96CW5) Gamma-tubulin complex component 3 (GCP-3) (S... 63 1e-17
2GCP3_MOUSE (P58854) Gamma-tubulin complex component 3 (GCP-3) 63 2e-17
3GCP3_XENLA (O73787) Gamma-tubulin complex component 3 homolog (G... 62 4e-17
4SPC98_DICDI (Q95ZG4) Spindle pole body component 98 (Spc98) (DdS... 64 8e-17
5GCP3_DROME (Q9XYP8) Gamma-tubulin complex component 3 homolog (G... 62 9e-15
6ALP6_SCHPO (Q9USQ2) Spindle pole body component alp6 (Altered po... 60 6e-14
7SPC98_YEAST (P53540) Spindle pole body component SPC98 42 8e-06
8GCP2_HUMAN (Q9BSJ2) Gamma-tubulin complex component 2 (GCP-2) (S... 38 2e-05
9GCP2_MOUSE (Q921G8) Gamma-tubulin complex component 2 (GCP-2) 38 4e-05
10GCP4_ARATH (Q9M350) Gamma-tubulin complex component 4 homolog 28 0.27
11GCP2_DROME (Q9XYP7) Gamma-tubulin complex component 2 homolog (G... 33 0.29
12GCP4_MEDTR (Q9SC88) Gamma-tubulin complex component 4 homolog 30 3.2
13GLND_ACIAD (Q6FAM5) [Protein-PII] uridylyltransferase (EC 2.7.7.... 30 3.2
14ATG17_ASPFU (Q4X0B0) Autophagy-related protein 17 30 3.2
15STML1_HUMAN (Q9UBI4) Stomatin-like protein 1 (SLP-1) (Stomatin-r... 30 4.2
16GCP6_HUMAN (Q96RT7) Gamma-tubulin complex component 6 (GCP-6) 29 5.5
17HM2L1_HUMAN (Q9UGU5) High mobility group protein 2-like 1 (HMGBC... 29 7.2
18FOSB_HUMAN (P53539) Protein fosB (G0/G1 switch regulatory protei... 28 9.4
19MAP2_RAT (P15146) Microtubule-associated protein 2 (MAP 2) (MAP-2) 28 9.4
20MAP2_HUMAN (P11137) Microtubule-associated protein 2 (MAP 2) (MA... 28 9.4
21RPOB_RHIME (Q92QH7) DNA-directed RNA polymerase beta chain (EC 2... 28 9.4
22STML1_MOUSE (Q8CI66) Stomatin-like protein 1 (SLP-1) 28 9.4
23MAP2_MOUSE (P20357) Microtubule-associated protein 2 (MAP 2) 28 9.4

>GCP3_HUMAN (Q96CW5) Gamma-tubulin complex component 3 (GCP-3) (Spindle pole|
           body protein Spc98 homolog) (hSpc98) (hGCP3) (h104p)
          Length = 907

 Score = 63.2 bits (152), Expect(2) = 1e-17
 Identities = 36/111 (32%), Positives = 59/111 (53%)
 Frame = +1

Query: 142 MLRSFISPVLAQRILGTGKSINFLRV*CDDNGWDEAATEAAAYVGTTTSRGGLGYGQIDA 321
           M+ SF++   ++++L  GKSINFL   C D               +      L     +A
Sbjct: 470 MIPSFMTMDQSRKVLLIGKSINFLHQVCHDQTPTTKMIAVTKSAESPQDAADLFTDLENA 529

Query: 322 LEALVVEAAKRIDQRLMDVIHKRYRFKDHCLAIKRYLLLGKGDFVQYLMDV 474
            +  +  A     + L+DV++K+Y   DH  A++RYLLLG+GDF+++LMD+
Sbjct: 530 FQGKIDAAYFETSKYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDL 580



 Score = 45.1 bits (105), Expect(2) = 1e-17
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 23  WVLEGELEDVFGEFFIVGQP-VKAESLWREGYLIQSDMLP 139
           W+ +GELED + EFF+   P VK + LW + Y ++  M+P
Sbjct: 433 WIYDGELEDTYHEFFVASDPTVKTDRLWHDKYTLRKSMIP 472



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>GCP3_MOUSE (P58854) Gamma-tubulin complex component 3 (GCP-3)|
          Length = 905

 Score = 62.8 bits (151), Expect(2) = 2e-17
 Identities = 36/111 (32%), Positives = 59/111 (53%)
 Frame = +1

Query: 142 MLRSFISPVLAQRILGTGKSINFLRV*CDDNGWDEAATEAAAYVGTTTSRGGLGYGQIDA 321
           M+ SFI+   ++++L  GKSINFL   C D               +      L     +A
Sbjct: 468 MIPSFITMDQSRKVLLIGKSINFLHQVCHDQTPTTKMIAVTKSAESPRDAADLFTDLENA 527

Query: 322 LEALVVEAAKRIDQRLMDVIHKRYRFKDHCLAIKRYLLLGKGDFVQYLMDV 474
            +  +  A     + L+DV++K+Y   +H  A++RYLLLG+GDF+++LMD+
Sbjct: 528 FQGKIDAAYFETSKYLLDVLNKKYSLLEHMQAMRRYLLLGQGDFIRHLMDL 578



 Score = 45.1 bits (105), Expect(2) = 2e-17
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 23  WVLEGELEDVFGEFFIVGQP-VKAESLWREGYLIQSDMLP 139
           W+ +GELED + EFF+   P VK + LW + Y ++  M+P
Sbjct: 431 WIYDGELEDTYHEFFVASDPTVKTDRLWHDKYTLRKSMIP 470



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>GCP3_XENLA (O73787) Gamma-tubulin complex component 3 homolog (Gamma ring|
           complex protein 109) (Xgrip109) (x109p)
          Length = 906

 Score = 62.0 bits (149), Expect(2) = 4e-17
 Identities = 36/111 (32%), Positives = 59/111 (53%)
 Frame = +1

Query: 142 MLRSFISPVLAQRILGTGKSINFLRV*CDDNGWDEAATEAAAYVGTTTSRGGLGYGQIDA 321
           M+ SF++   ++++L  GKSINFL   C D      A        +      L     +A
Sbjct: 469 MIPSFMTMDQSRKVLLIGKSINFLHQVCHDQTPASKAMAVGKSAESPKDAAELFTDLENA 528

Query: 322 LEALVVEAAKRIDQRLMDVIHKRYRFKDHCLAIKRYLLLGKGDFVQYLMDV 474
            +  +  A     + L+DV++K Y   +H  A++RYLLLG+GDF+++LMD+
Sbjct: 529 FQTKIDAAYFDTSKYLLDVLNKNYNLLEHMQAMRRYLLLGQGDFIRHLMDL 579



 Score = 44.7 bits (104), Expect(2) = 4e-17
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 23  WVLEGELEDVFGEFFIVGQP-VKAESLWREGYLIQSDMLP 139
           W+ +GELED + EFF+   P VK + LW + Y ++  M+P
Sbjct: 432 WIYDGELEDTYHEFFVASDPVVKTDRLWHDKYSLRKSMIP 471



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>SPC98_DICDI (Q95ZG4) Spindle pole body component 98 (Spc98) (DdSpc98)|
           (Fragment)
          Length = 812

 Score = 63.5 bits (153), Expect(2) = 8e-17
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 39/150 (26%)
 Frame = +1

Query: 142 MLRSFISPVLAQRILGTGKSINFLRV*C--------------------------DDN--- 234
           +L SFIS  L++RIL  GKSIN+++  C                          DDN   
Sbjct: 372 LLPSFISLPLSKRILIIGKSINYMKQFCNNFKEDKNDRYYYYNQEDDDDDDEDHDDNDDD 431

Query: 235 ------GWDEAATEAAAYVGTTT----SRGGLGYGQIDALEALVVEAAKRIDQRLMDVIH 384
                 G D+   E    +  +         L Y   + L+ ++   +++  +RL+ ++ 
Sbjct: 432 DENENQGEDDEIIERKLLIKESKIIKEKTKELNYINKEVLQEIIELVSRQSSERLLKIVL 491

Query: 385 KRYRFKDHCLAIKRYLLLGKGDFVQYLMDV 474
            R++F +H  A+K+YLLLG+GDF+QYLMD+
Sbjct: 492 NRFKFMNHVKALKKYLLLGQGDFIQYLMDL 521



 Score = 42.0 bits (97), Expect(2) = 8e-17
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +2

Query: 2   LFEMVRSWVLEGELEDVFGEFFI-VGQPVKAESLWREGYLIQSDMLP 139
           LF M+R W+ +GE+ D + EFFI   + V+ E  W+E + I + +LP
Sbjct: 328 LFSMIRLWMFKGEINDPYQEFFIRQYESVQLEKTWKEKFAIVARLLP 374



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>GCP3_DROME (Q9XYP8) Gamma-tubulin complex component 3 homolog (Gamma ring|
           complex protein 91) (dGrip91) (d91p)
          Length = 917

 Score = 61.6 bits (148), Expect(2) = 9e-15
 Identities = 35/110 (31%), Positives = 61/110 (55%)
 Frame = +1

Query: 142 MLRSFISPVLAQRILGTGKSINFLRV*CDDNGWDEAATEAAAYVGTTTSRGGLGYGQIDA 321
           ML  F+   +A +IL TGKSINFLR  C++ G  +   E    + ++ S+    Y    +
Sbjct: 465 MLPKFVPMDMANKILMTGKSINFLREICEEQGMMKERDELMKVMESSASQI-FSYTPDTS 523

Query: 322 LEALVVEAAKRIDQRLMDVIHKRYRFKDHCLAIKRYLLLGKGDFVQYLMD 471
             A V    ++  + ++D++   ++  DH   ++RYLLLG+GDF+  L++
Sbjct: 524 WHAAVETCYQQTSKHVLDIMVGPHKLLDHLHGMRRYLLLGQGDFISILIE 573



 Score = 37.0 bits (84), Expect(2) = 9e-15
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 2   LFEMVRSWVLEGELEDVFGEFFIVG-QPVKAESLWREGYLIQSDMLP 139
           L  M+  W+LEG + D+  EFF+   + V  + LW + + ++  MLP
Sbjct: 421 LVRMISKWILEGGISDMHREFFVKSIKDVGVDRLWHDKFRLRLPMLP 467



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>ALP6_SCHPO (Q9USQ2) Spindle pole body component alp6 (Altered polarity protein|
           6)
          Length = 832

 Score = 60.5 bits (145), Expect(2) = 6e-14
 Identities = 37/111 (33%), Positives = 56/111 (50%)
 Frame = +1

Query: 139 DMLRSFISPVLAQRILGTGKSINFLRV*CDDNGWDEAATEAAAYVGTTTSRGGLGYGQID 318
           +++ SF+S  L  +I   GKS+NF R  C D  W +   +             L Y    
Sbjct: 425 ELIPSFLSEELVDKIFLIGKSLNFARYGCGDFDWAQEHYQKLVKK--------LSYRDPH 476

Query: 319 ALEALVVEAAKRIDQRLMDVIHKRYRFKDHCLAIKRYLLLGKGDFVQYLMD 471
           +LE +V +A       L+ ++ + +   DH  AIK+YLLLG+GDFV  LM+
Sbjct: 477 SLETVVDKAYTESINHLVYLMEEVFHLTDHLKAIKKYLLLGQGDFVDLLME 527



 Score = 35.4 bits (80), Expect(2) = 6e-14
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
 Frame = +2

Query: 2   LFEMVRSWVLEGELEDVFGEFFIV--------GQPVKAESLWREGYLIQSDMLP 139
           L+EM+ +W+ +GEL D + EFF+             + + +W+  Y +  +++P
Sbjct: 375 LYEMIENWIYKGELVDPYQEFFVKEKNGSESHDHQGQGDVVWKGKYFLDKELIP 428



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>SPC98_YEAST (P53540) Spindle pole body component SPC98|
          Length = 846

 Score = 42.4 bits (98), Expect(2) = 8e-06
 Identities = 26/107 (24%), Positives = 50/107 (46%)
 Frame = +1

Query: 151 SFISPVLAQRILGTGKSINFLRV*CDDNGWDEAATEAAAYVGTTTSRGGLGYGQIDALEA 330
           +FI   LA +I   GKS  FL   C +  W    ++    +  + S  G+     + +  
Sbjct: 392 AFIPKELAYKIFMIGKSYIFLEKYCKEVQWTNEFSKKYHVLYQSNSYRGISTNFFEIIND 451

Query: 331 LVVEAAKRIDQRLMDVIHKRYRFKDHCLAIKRYLLLGKGDFVQYLMD 471
              E     +Q    ++++++ ++D   A+K  LL+GK DF+  L++
Sbjct: 452 QYSEIVNHTNQ----ILNQKFHYRDVVFALKNILLMGKSDFMDALIE 494



 Score = 25.8 bits (55), Expect(2) = 8e-06
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 5   FEMVRSWVLEGELEDVFGEFFI 70
           +E + +W+ +G L   +GEFFI
Sbjct: 343 YEYLMNWLTKGLLRATYGEFFI 364



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>GCP2_HUMAN (Q9BSJ2) Gamma-tubulin complex component 2 (GCP-2) (Spindle pole|
           body protein Spc97 homolog) (hSpc97) (hGCP2) (h103p)
          Length = 902

 Score = 38.1 bits (87), Expect(2) = 2e-05
 Identities = 29/102 (28%), Positives = 47/102 (46%)
 Frame = +1

Query: 169 LAQRILGTGKSINFLRV*CDDNGWDEAATEAAAYVGTTTSRGGLGYGQIDALEALVVEAA 348
           +A +IL TGK +N +R    + G D     A   + T   R       ++ +E     A+
Sbjct: 446 MADKILSTGKYLNVVR----ECGHDVTCPVAKEIIYTLKERA-----YVEQIEKAFNYAS 496

Query: 349 KRIDQRLMDVIHKRYRFKDHCLAIKRYLLLGKGDFVQYLMDV 474
           K     L+D + +      H  +IKRY L+ +GDF  + MD+
Sbjct: 497 KV----LLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDL 534



 Score = 28.5 bits (62), Expect(2) = 2e-05
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
 Frame = +2

Query: 5   FEMVRSWVLEGELEDVFGEFFIVGQPVKAESL--------WREGYLIQSDMLP 139
           FE++  W+  G + D + EF +    ++ E +        W + Y I    +P
Sbjct: 388 FEVLEKWIYRGIIHDPYSEFMVEEHELRKERIQEDYNDKYWDQRYTIVQQQIP 440



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>GCP2_MOUSE (Q921G8) Gamma-tubulin complex component 2 (GCP-2)|
          Length = 905

 Score = 37.7 bits (86), Expect(2) = 4e-05
 Identities = 32/108 (29%), Positives = 50/108 (46%)
 Frame = +1

Query: 151 SFISPVLAQRILGTGKSINFLRV*CDDNGWDEAATEAAAYVGTTTSRGGLGYGQIDALEA 330
           SF+  V A +IL TGK +N +R    + G D     A   + T   R       ++ +E 
Sbjct: 441 SFLQKV-AGKILSTGKYLNVVR----ECGHDVTCPVAKEIIYTLKERA-----YVEQIEK 490

Query: 331 LVVEAAKRIDQRLMDVIHKRYRFKDHCLAIKRYLLLGKGDFVQYLMDV 474
               A+K     L+D + +      H  +IKRY L+ +GDF  + MD+
Sbjct: 491 AFNYASKV----LLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDL 534



 Score = 28.1 bits (61), Expect(2) = 4e-05
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
 Frame = +2

Query: 5   FEMVRSWVLEGELEDVFGEFFIVGQPVKAESL--------WREGYLIQSDMLP 139
           FE++  W+  G + D + EF +    ++ E +        W + Y +    +P
Sbjct: 388 FEILEKWIYRGIIHDPYSEFMVEEHELRKEKIQEDYNDKYWDQRYTVLPQQIP 440



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>GCP4_ARATH (Q9M350) Gamma-tubulin complex component 4 homolog|
          Length = 745

 Score = 28.1 bits (61), Expect(2) = 0.27
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 23/69 (33%)
 Frame = +2

Query: 2   LFEMVRSWVLEGELEDVFGEFFIVGQ---------------------PVKAESL--WREG 112
           ++  + +W++ G L+D  GEFFI  Q                      V   SL  W  G
Sbjct: 211 MYNQLAAWMVYGILQDPHGEFFIKRQDDGDLDHRSSQEEVSEKLARTSVHETSLTDWHSG 270

Query: 113 YLIQSDMLP 139
           + I  DMLP
Sbjct: 271 FHISLDMLP 279



 Score = 24.3 bits (51), Expect(2) = 0.27
 Identities = 34/150 (22%), Positives = 53/150 (35%), Gaps = 39/150 (26%)
 Frame = +1

Query: 139 DMLRSFISPVLAQRILGTGKSINFLRV*CDDNGWDEAATEAAAYVGTTTSRGG------- 297
           DML  +I   L + IL  GK+I  LR       + +  +      G+   RG        
Sbjct: 276 DMLPDYIPMRLGESILFAGKAIRVLRNPSPAFQFQKDKSFQQTMRGSQRIRGFMHSDFPE 335

Query: 298 --------------LGYGQIDALEALV-----------------VEAAKRI-DQRLMDVI 381
                         L   + D +EA++                 V++ + I    L  ++
Sbjct: 336 TETELDADLTGGELLPQSEADKIEAMLKDLKESSEFHKRSFECTVDSVRAIAASHLWQLV 395

Query: 382 HKRYRFKDHCLAIKRYLLLGKGDFVQYLMD 471
             R     H  A+K Y LL KGDF Q  ++
Sbjct: 396 VVRADLNGHLKALKDYFLLEKGDFFQCFLE 425



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>GCP2_DROME (Q9XYP7) Gamma-tubulin complex component 2 homolog (Gamma ring|
           complex protein 84) (dGrip84) (d84p)
          Length = 852

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 367 LMDVIHKRYRFKDHCLAIKRYLLLGKGDFVQYLMD 471
           L+DV+        H  ++KRYLLL +GDF    MD
Sbjct: 488 LLDVLLTENDLMGHLQSVKRYLLLNQGDFTMQFMD 522



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>GCP4_MEDTR (Q9SC88) Gamma-tubulin complex component 4 homolog|
          Length = 739

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 2   LFEMVRSWVLEGELEDVFGEFFI---VGQPVKAESLWREGYLIQSDMLPICYGVSFLRCW 172
           ++  + SW++ G LED  GEFFI    G+ V+  S  +E   I   +  +    + L  W
Sbjct: 195 MYNQLASWMVYGILEDRHGEFFISRQEGRDVENSSSHQE---ISEKLSRLSTADASLSDW 251

Query: 173 HKG 181
           H G
Sbjct: 252 HMG 254



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>GLND_ACIAD (Q6FAM5) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII|
           uridylyl-transferase) (Uridylyl-removing enzyme) (UTase)
          Length = 888

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
 Frame = +1

Query: 331 LVVEAAKRIDQRLMD----------VIHKRYRFKDHCLAIKRYLLLG 441
           L++ AAKRIDQ   D          +I   YR  D  + +KRY +LG
Sbjct: 388 LLIMAAKRIDQEFRDNPAHQALFMAIIRSPYRLYDTLVDMKRYGILG 434



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>ATG17_ASPFU (Q4X0B0) Autophagy-related protein 17|
          Length = 551

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
 Frame = +1

Query: 121 SV*YATDMLRSFISPVLAQRILG-TGKSINFLRV*CDDNGWDEAATEAAAYVGTTTSRGG 297
           S+  AT  +   +S + + R+ G   ++ NF +V      W E     +  +   +    
Sbjct: 355 SIYNATTDIYQHLSSLGSTRLPGYIAQAHNFTQV------WHEENDRISGGLADLSDLNS 408

Query: 298 LGYGQIDALEALVVEAAK------RIDQRLMDVIHKRYRFKDHCLAIKRYLLLGKGDFV 456
           L  G +DA + L+VE A+      R+++ L D  HK  +  +  +  +    + KGD++
Sbjct: 409 LYNGFLDAYDGLIVEVARRKHVRQRVEKVLRDTRHKLDQLYEEDVTARETFRVEKGDYL 467



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>STML1_HUMAN (Q9UBI4) Stomatin-like protein 1 (SLP-1) (Stomatin-related protein)|
           (STORP) (EPB72-like 1) (UNC24 homolog)
          Length = 398

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 247 AATEAAAYVGTTTSRGGLGYGQIDALEALVVEAAK 351
           + T++A ++  TT RG +G+G  D +  +VVE A+
Sbjct: 322 SGTQSAYFLDLTTGRGRVGHGVPDGIPDVVVEMAE 356



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>GCP6_HUMAN (Q96RT7) Gamma-tubulin complex component 6 (GCP-6)|
          Length = 1819

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = +2

Query: 14  VRSWVLEGELEDVFGEFFIVGQ----PVKAESLWREGYLIQSDMLPICYGV 154
           +  WV  G   D +GEF I         + +S W  GY++ S  +  C  V
Sbjct: 536 IHDWVYSGVFRDAYGEFMIQVNHEYLSFRDKSYWTHGYVLISKEVEDCVPV 586



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>HM2L1_HUMAN (Q9UGU5) High mobility group protein 2-like 1 (HMGBCG protein)|
          Length = 601

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 191 VPRILCASTGEMKLRSISVAYQT-E*GSPPATMIQP*LAAQR*RTRQIHPPIHLQ 30
           V R   +S G MK+++ SV   + +  SPP TM+ P   A+   T  I    HLQ
Sbjct: 475 VKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPASPAKAPETEPIDVAAHLQ 529



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>FOSB_HUMAN (P53539) Protein fosB (G0/G1 switch regulatory protein 3)|
          Length = 338

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 382 GSHPSNVDQSSWLLLPPMPP 323
           GS P+  D  SWLL PP PP
Sbjct: 243 GSAPAKEDGFSWLLPPPPPP 262



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>MAP2_RAT (P15146) Microtubule-associated protein 2 (MAP 2) (MAP-2)|
          Length = 1861

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 321 SVNLPITKPTSTCCGANIGRGLSGSLIPTIIITSNSEKVD 202
           S+NLP++   S   G N GRG   S + + I+T+ S  +D
Sbjct: 704 SINLPMSCLDSIALGFNFGRGHDLSPLASDILTNTSGSMD 743



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>MAP2_HUMAN (P11137) Microtubule-associated protein 2 (MAP 2) (MAP-2)|
          Length = 1827

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 321 SVNLPITKPTSTCCGANIGRGLSGSLIPTIIITSNSEKVD 202
           S+NLP++   S   G N GRG   S + + I+T+ S  +D
Sbjct: 701 SINLPMSCLDSIALGFNFGRGHDLSPLASDILTNTSGSMD 740



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>RPOB_RHIME (Q92QH7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1380

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 307  GQIDALEALVVEAAKRIDQRLMDVIHKRYR 396
            G+I+AL A   E+  R++QR MD + K  R
Sbjct: 1031 GEIEALRAQYDESKSRLEQRFMDKVEKVQR 1060



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>STML1_MOUSE (Q8CI66) Stomatin-like protein 1 (SLP-1)|
          Length = 399

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 247 AATEAAAYVGTTTSRGGLGYGQIDALEALVVEAAKRIDQRLM 372
           + T++  ++  TT +G +G+G+ D +  +VVE A+   Q L+
Sbjct: 323 SGTQSIYFLDLTTGQGRVGHGEPDGIPDVVVEMAEADLQALL 364



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>MAP2_MOUSE (P20357) Microtubule-associated protein 2 (MAP 2)|
          Length = 1828

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 321 SVNLPITKPTSTCCGANIGRGLSGSLIPTIIITSNSEKVD 202
           S+NLP++   S   G N GRG   S + + I+T+ S  +D
Sbjct: 702 SINLPMSCLDSIALGFNFGRGHDLSPLASDILTNTSGSMD 741


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,389,939
Number of Sequences: 219361
Number of extensions: 1284678
Number of successful extensions: 3496
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3486
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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