Clone Name | basdm08 |
---|---|
Clone Library Name | barley_pub |
>gb|U60754.1|TAU60754 Triticum aestivum delta-24-sterol methyltransferase (TA-MT) mRNA, complete cds Length = 1392 Score = 260 bits (131), Expect = 5e-66 Identities = 175/191 (91%), Gaps = 1/191 (0%) Strand = Plus / Plus Query: 433 ttatttttgccttgtcccactcttaattttgggacaannnnnnnnncacaaggtatgaga 492 |||||||| |||||||| |||| |||||||||||||| ||| |||||||||| Sbjct: 115 ttattttttccttgtcctactcctaattttgggacaatttttttt-caccaggtatgaga 173 Query: 493 aatatcatggatattatggagggaaggaggaatcgaggaaatccaactacaccgatatgg 552 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 174 aatatcatggatattacggagggaaggaggaatcgaggaaatccaactacaccgatatgg 233 Query: 553 ttaataaatactatgatcttgctactagcttctacgagtatggctggggtgaatccttcc 612 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 234 ttaataaatattatgatcttgctactagcttctatgagtatggctggggtgaatccttcc 293 Query: 613 actttgctcac 623 ||||||||||| Sbjct: 294 actttgctcac 304 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 298 atcataaggtatgtgttttgcctctgcacacactgtaggatctgcagagtgt 349 ||||||| || |||||||||||||||||| | |||| |||||||| |||||| Sbjct: 20 atcataatgtttgtgttttgcctctgcacgcgctgtcggatctgccgagtgt 71 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 gtcttcattccctgtactgtt 386 ||||||||||||||||||||| Sbjct: 70 gtcttcattccctgtactgtt 90 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctgtttatgttcattcactt 401 |||||||||||||||||||| Sbjct: 92 ctgtttatgttcattcactt 111
>gb|BT018799.1| Zea mays clone EL01N0528H08.d mRNA sequence Length = 1589 Score = 204 bits (103), Expect = 3e-49 Identities = 130/139 (93%) Strand = Plus / Plus Query: 485 gtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactacac 544 ||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||| || Sbjct: 268 gtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaactatac 327 Query: 545 cgatatggttaataaatactatgatcttgctactagcttctacgagtatggctggggtga 604 ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct: 328 tgatatggttaataaatactatgatcttgccactagcttctatgagtatggttggggtga 387 Query: 605 atccttccactttgctcac 623 ||||||||||||||||||| Sbjct: 388 atccttccactttgctcac 406
>gb|AY103656.1| Zea mays PCO072714 mRNA sequence Length = 1665 Score = 204 bits (103), Expect = 3e-49 Identities = 130/139 (93%) Strand = Plus / Plus Query: 485 gtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactacac 544 ||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||| || Sbjct: 324 gtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaactatac 383 Query: 545 cgatatggttaataaatactatgatcttgctactagcttctacgagtatggctggggtga 604 ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct: 384 tgatatggttaataaatactatgatcttgccactagcttctatgagtatggttggggtga 443 Query: 605 atccttccactttgctcac 623 ||||||||||||||||||| Sbjct: 444 atccttccactttgctcac 462
>gb|AF045570.1|AF045570 Zea mays (S)-adenosyl-L-methionine:delta 24-sterol methyltransferase mRNA, complete cds Length = 1497 Score = 204 bits (103), Expect = 3e-49 Identities = 130/139 (93%) Strand = Plus / Plus Query: 485 gtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactacac 544 ||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||| || Sbjct: 149 gtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaactatac 208 Query: 545 cgatatggttaataaatactatgatcttgctactagcttctacgagtatggctggggtga 604 ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct: 209 tgatatggttaataaatactatgatcttgccactagcttctatgagtatggttggggtga 268 Query: 605 atccttccactttgctcac 623 ||||||||||||||||||| Sbjct: 269 atccttccactttgctcac 287
>gb|U79669.1|ZMU79669 Zea mays endosperm C-24 sterol methyltransferase (ESMT1) mRNA, complete cds Length = 1383 Score = 204 bits (103), Expect = 3e-49 Identities = 130/139 (93%) Strand = Plus / Plus Query: 485 gtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactacac 544 ||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||| || Sbjct: 161 gtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaactatac 220 Query: 545 cgatatggttaataaatactatgatcttgctactagcttctacgagtatggctggggtga 604 ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct: 221 tgatatggttaataaatactatgatcttgccactagcttctatgagtatggttggggtga 280 Query: 605 atccttccactttgctcac 623 ||||||||||||||||||| Sbjct: 281 atccttccactttgctcac 299
>dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D19, full insert sequence Length = 2883 Score = 165 bits (83), Expect = 2e-37 Identities = 128/143 (89%) Strand = Plus / Plus Query: 481 caaggtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaact 540 |||||||||||||||| |||||||| |||||||| || || ||| | || || ||||||| Sbjct: 1640 caaggtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtccaact 1699 Query: 541 acaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggctggg 600 |||| || |||||||||||||||||||||||||| || |||||||| |||||||| |||| Sbjct: 1700 acacagacatggttaataaatactatgatcttgccaccagcttctatgagtatggttggg 1759 Query: 601 gtgaatccttccactttgctcac 623 ||||||||||||||||||||||| Sbjct: 1760 gtgaatccttccactttgctcac 1782
>ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1525 Score = 157 bits (79), Expect = 5e-35 Identities = 124/139 (89%) Strand = Plus / Plus Query: 485 gtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactacac 544 |||||||||||| |||||||| |||||||| || || ||| | || || ||||||||||| Sbjct: 187 gtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtccaactacac 246 Query: 545 cgatatggttaataaatactatgatcttgctactagcttctacgagtatggctggggtga 604 || |||||||||||||||||||||||||| || |||||||| |||||||| |||||||| Sbjct: 247 agacatggttaataaatactatgatcttgccaccagcttctatgagtatggttggggtga 306 Query: 605 atccttccactttgctcac 623 ||||||||||||||||||| Sbjct: 307 atccttccactttgctcac 325
>dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149L23, full insert sequence Length = 1526 Score = 157 bits (79), Expect = 5e-35 Identities = 124/139 (89%) Strand = Plus / Plus Query: 485 gtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactacac 544 |||||||||||| |||||||| |||||||| || || ||| | || || ||||||||||| Sbjct: 187 gtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtccaactacac 246 Query: 545 cgatatggttaataaatactatgatcttgctactagcttctacgagtatggctggggtga 604 || |||||||||||||||||||||||||| || |||||||| |||||||| |||||||| Sbjct: 247 agacatggttaataaatactatgatcttgccaccagcttctatgagtatggttggggtga 306 Query: 605 atccttccactttgctcac 623 ||||||||||||||||||| Sbjct: 307 atccttccactttgctcac 325
>gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloartenol-C24-methyltransferase mRNA, complete cds Length = 1629 Score = 157 bits (79), Expect = 5e-35 Identities = 124/139 (89%) Strand = Plus / Plus Query: 485 gtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactacac 544 |||||||||||| |||||||| |||||||| || || ||| | || || ||||||||||| Sbjct: 261 gtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtccaactacac 320 Query: 545 cgatatggttaataaatactatgatcttgctactagcttctacgagtatggctggggtga 604 || |||||||||||||||||||||||||| || |||||||| |||||||| |||||||| Sbjct: 321 agacatggttaataaatactatgatcttgccaccagcttctatgagtatggttggggtga 380 Query: 605 atccttccactttgctcac 623 ||||||||||||||||||| Sbjct: 381 atccttccactttgctcac 399
>gb|U60755.1|TAU60755 Triticum aestivum delta-24-sterol methyltransferase (TA-MT) gene, complete cds Length = 4749 Score = 155 bits (78), Expect = 2e-34 Identities = 142/161 (88%), Gaps = 3/161 (1%) Strand = Plus / Plus Query: 192 caaggcctgaaccatgtcatgttttttaa-ggcctgaaccatgtcatgtttttt--aagg 248 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| Sbjct: 152 caaggcctgaaccatgtcatgttttttaaaggcctcaaccatgtcatgttttttttaagg 211 Query: 249 cctgaatgttaaactcgtcctttcacatgtgcacactcttttaagggctatcataaggta 308 |||||| ||||||| ||||||||||||||||||||| || |||| ||||||| || Sbjct: 212 cctgaaaattaaactagtcctttcacatgtgcacactagttcaaggagcatcataatgtt 271 Query: 309 tgtgttttgcctctgcacacactgtaggatctgcagagtgt 349 |||||||||||||||||| | |||| |||||||| |||||| Sbjct: 272 tgtgttttgcctctgcacgcgctgtcggatctgccgagtgt 312 Score = 145 bits (73), Expect = 2e-31 Identities = 108/121 (89%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 433 ttatttttgccttgtcccactcttaattttgggacaannnnnnnnncacaaggtatgaga 492 |||||||| |||||||| |||| |||||||||||||| |||||||||||||| Sbjct: 356 ttattttttccttgtcctactcctaattttgggacaatttttttt-cacaaggtatgaga 414 Query: 493 aatatcatggatattatggagggaaggaggaatcgaggaaatccaactacaccgatatgg 552 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 aatatcatggatattacggagggaaggaggaatcgaggaaatccaactacaccgatatgg 474 Query: 553 t 553 | Sbjct: 475 t 475 Score = 137 bits (69), Expect = 5e-29 Identities = 72/73 (98%) Strand = Plus / Plus Query: 551 ggttaataaatactatgatcttgctactagcttctacgagtatggctggggtgaatcctt 610 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1017 ggttaataaatactatgatcttgctactagcttctatgagtatggctggggtgaatcctt 1076 Query: 611 ccactttgctcac 623 ||||||||||||| Sbjct: 1077 ccactttgctcac 1089 Score = 71.9 bits (36), Expect = 2e-09 Identities = 94/112 (83%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 18 ttcctcgctcaaattcca-catttaagtctttaattgattaaatgcacgtctgaagatgt 76 ||||| ||| |||||||| || |||||||||| | |||||||||||| ||| ||||||| Sbjct: 4 ttcctggcttaaattccaacacttaagtctttggtggattaaatgcacatctcaagatgt 63 Query: 77 aactatctgtcccgtcagtgtgctggcaccacaagtcatccagctgtaccta 128 | ||||||| ||| | ||||||| | || |||||||||||| ||||||||| Sbjct: 64 agctatctgccccctgggtgtgctagtactacaagtcatccaactgtaccta 115 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 gtcttcattccctgtactgtt 386 ||||||||||||||||||||| Sbjct: 311 gtcttcattccctgtactgtt 331 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctgtttatgttcattcactt 401 |||||||||||||||||||| Sbjct: 333 ctgtttatgttcattcactt 352
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 113 bits (57), Expect = 7e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 551 ggttaataaatactatgatcttgctactagcttctacgagtatggctggggtgaatcctt 610 |||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||| Sbjct: 5786559 ggttaataaatactatgatcttgccaccagcttctatgagtatggttggggtgaatcctt 5786500 Query: 611 ccactttgctcac 623 ||||||||||||| Sbjct: 5786499 ccactttgctcac 5786487 Score = 58.0 bits (29), Expect = 4e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 481 caaggtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaact 540 |||||||||||||||| |||||||| |||||||| || || ||| | || || ||||||| Sbjct: 5787163 caaggtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtccaact 5787104 Query: 541 acaccgatatggt 553 |||| || ||||| Sbjct: 5787103 acacagacatggt 5787091
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1119_B04 Length = 151721 Score = 113 bits (57), Expect = 7e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 551 ggttaataaatactatgatcttgctactagcttctacgagtatggctggggtgaatcctt 610 |||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||| Sbjct: 93587 ggttaataaatactatgatcttgccaccagcttctatgagtatggttggggtgaatcctt 93528 Query: 611 ccactttgctcac 623 ||||||||||||| Sbjct: 93527 ccactttgctcac 93515 Score = 58.0 bits (29), Expect = 4e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 481 caaggtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaact 540 |||||||||||||||| |||||||| |||||||| || || ||| | || || ||||||| Sbjct: 94191 caaggtatgagaaataccatggatactatggaggaaaagaagaagcaagaaagtccaact 94132 Query: 541 acaccgatatggt 553 |||| || ||||| Sbjct: 94131 acacagacatggt 94119
>gb|DQ116445.1| Gossypium hirsutum 24-sterol C-methyltransferase (SMT1) mRNA, complete cds Length = 1386 Score = 89.7 bits (45), Expect = 1e-14 Identities = 114/137 (83%) Strand = Plus / Plus Query: 485 gtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactacac 544 ||||||| |||||||| | ||||||||| | |||||| ||| ||| |||||||||| Sbjct: 203 gtatgagcgatatcatgtcttttatggaggcgaagaggaagagagaaaagccaactacac 262 Query: 545 cgatatggttaataaatactatgatcttgctactagcttctacgagtatggctggggtga 604 || |||||||| |||||||||||||||| ||| ||||| || |||| ||| |||||||| Sbjct: 263 tgacatggttaacaaatactatgatcttgttaccagcttttatgagtttggatggggtga 322 Query: 605 atccttccactttgctc 621 ||| ||||| ||||||| Sbjct: 323 atctttccattttgctc 339
>gb|U43683.1|GMU43683 Glycine max S-adenosyl-L-methionine:delta24-sterol-C- methyltransferase mRNA, complete cds Length = 1504 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 485 gtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactacac 544 ||||||||| ||||||| | |||||||| | |||||| ||||||| | || || || Sbjct: 309 gtatgagaagtatcatgtttgctatggaggtcaagaggaagagaggaaagctaattatac 368 Query: 545 cgatatggttaataaatactatgatcttgctactagcttctacgagtatggctggggtga 604 ||||||||||||||||||||| ||||||| ||| ||||| || |||| ||||||||| || Sbjct: 369 cgatatggttaataaatactacgatcttgttaccagcttttatgagtttggctgggggga 428 Query: 605 atccttccactttgc 619 ||| ||||| ||||| Sbjct: 429 atctttccattttgc 443
>ref|NM_121374.2| Arabidopsis thaliana SMT1 (STEROL METHYLTRANSFERASE 1) AT5G13710 (SMT1) mRNA, complete cds Length = 1462 Score = 79.8 bits (40), Expect = 1e-11 Identities = 94/112 (83%) Strand = Plus / Plus Query: 508 atggagggaaggaggaatcgaggaaatccaactacaccgatatggttaataaatactatg 567 ||||||| || |||||| ||| ||| |||| || || || ||||||||||| ||||||| Sbjct: 187 atggaggaaacgaggaagagagaaaagccaattatactgacatggttaataagtactatg 246 Query: 568 atcttgctactagcttctacgagtatggctggggtgaatccttccactttgc 619 | |||||||||||||| || ||||| || ||||| ||||||||||| ||||| Sbjct: 247 accttgctactagcttttatgagtacggatggggagaatccttccattttgc 298
>gb|BT015538.1| Arabidopsis thaliana At5g13710 mRNA sequence Length = 1008 Score = 79.8 bits (40), Expect = 1e-11 Identities = 94/112 (83%) Strand = Plus / Plus Query: 508 atggagggaaggaggaatcgaggaaatccaactacaccgatatggttaataaatactatg 567 ||||||| || |||||| ||| ||| |||| || || || ||||||||||| ||||||| Sbjct: 86 atggaggaaacgaggaagagagaaaagccaattatactgacatggttaataagtactatg 145 Query: 568 atcttgctactagcttctacgagtatggctggggtgaatccttccactttgc 619 | |||||||||||||| || ||||| || ||||| ||||||||||| ||||| Sbjct: 146 accttgctactagcttttatgagtacggatggggagaatccttccattttgc 197
>gb|AF195648.1| Arabidopsis thaliana sterol methyltransferase SMT1 (SMT1) mRNA, complete cds Length = 1257 Score = 79.8 bits (40), Expect = 1e-11 Identities = 94/112 (83%) Strand = Plus / Plus Query: 508 atggagggaaggaggaatcgaggaaatccaactacaccgatatggttaataaatactatg 567 ||||||| || |||||| ||| ||| |||| || || || ||||||||||| ||||||| Sbjct: 142 atggaggaaacgaggaagagagaaaagccaattatactgacatggttaataagtactatg 201 Query: 568 atcttgctactagcttctacgagtatggctggggtgaatccttccactttgc 619 | |||||||||||||| || ||||| || ||||| ||||||||||| ||||| Sbjct: 202 accttgctactagcttttatgagtacggatggggagaatccttccattttgc 253
>gb|BT000058.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At5g13710) mRNA, complete cds Length = 1108 Score = 79.8 bits (40), Expect = 1e-11 Identities = 94/112 (83%) Strand = Plus / Plus Query: 508 atggagggaaggaggaatcgaggaaatccaactacaccgatatggttaataaatactatg 567 ||||||| || |||||| ||| ||| |||| || || || ||||||||||| ||||||| Sbjct: 89 atggaggaaacgaggaagagagaaaagccaattatactgacatggttaataagtactatg 148 Query: 568 atcttgctactagcttctacgagtatggctggggtgaatccttccactttgc 619 | |||||||||||||| || ||||| || ||||| ||||||||||| ||||| Sbjct: 149 accttgctactagcttttatgagtacggatggggagaatccttccattttgc 200
>gb|AF494289.1| Arabidopsis thaliana cephalopod (CPH) mRNA, complete cds Length = 1080 Score = 79.8 bits (40), Expect = 1e-11 Identities = 94/112 (83%) Strand = Plus / Plus Query: 508 atggagggaaggaggaatcgaggaaatccaactacaccgatatggttaataaatactatg 567 ||||||| || |||||| ||| ||| |||| || || || ||||||||||| ||||||| Sbjct: 158 atggaggaaacgaggaagagagaaaagccaattatactgacatggttaataagtactatg 217 Query: 568 atcttgctactagcttctacgagtatggctggggtgaatccttccactttgc 619 | |||||||||||||| || ||||| || ||||| ||||||||||| ||||| Sbjct: 218 accttgctactagcttttatgagtacggatggggagaatccttccattttgc 269
>gb|AY120716.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At5g13710) mRNA, complete cds Length = 1245 Score = 79.8 bits (40), Expect = 1e-11 Identities = 94/112 (83%) Strand = Plus / Plus Query: 508 atggagggaaggaggaatcgaggaaatccaactacaccgatatggttaataaatactatg 567 ||||||| || |||||| ||| ||| |||| || || || ||||||||||| ||||||| Sbjct: 156 atggaggaaacgaggaagagagaaaagccaattatactgacatggttaataagtactatg 215 Query: 568 atcttgctactagcttctacgagtatggctggggtgaatccttccactttgc 619 | |||||||||||||| || ||||| || ||||| ||||||||||| ||||| Sbjct: 216 accttgctactagcttttatgagtacggatggggagaatccttccattttgc 267
>emb|BX831439.1|CNS0A23U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS90ZE01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1198 Score = 79.8 bits (40), Expect = 1e-11 Identities = 94/112 (83%) Strand = Plus / Plus Query: 508 atggagggaaggaggaatcgaggaaatccaactacaccgatatggttaataaatactatg 567 ||||||| || |||||| ||| ||| |||| || || || ||||||||||| ||||||| Sbjct: 115 atggaggaaacgaggaagagagaaaagccaattatactgacatggttaataagtactatg 174 Query: 568 atcttgctactagcttctacgagtatggctggggtgaatccttccactttgc 619 | |||||||||||||| || ||||| || ||||| ||||||||||| ||||| Sbjct: 175 accttgctactagcttttatgagtacggatggggagaatccttccattttgc 226
>emb|BX830674.1|CNS0A0QH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS13ZC03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1283 Score = 79.8 bits (40), Expect = 1e-11 Identities = 94/112 (83%) Strand = Plus / Plus Query: 508 atggagggaaggaggaatcgaggaaatccaactacaccgatatggttaataaatactatg 567 ||||||| || |||||| ||| ||| |||| || || || ||||||||||| ||||||| Sbjct: 140 atggaggaaacgaggaagagagaaaagccaattatactgacatggttaataagtactatg 199 Query: 568 atcttgctactagcttctacgagtatggctggggtgaatccttccactttgc 619 | |||||||||||||| || ||||| || ||||| ||||||||||| ||||| Sbjct: 200 accttgctactagcttttatgagtacggatggggagaatccttccattttgc 251
>gb|AF090372.1|AF090372 Arabidopsis thaliana SAM:cycloartenol-C24-methyltransferase (SMT1) mRNA, complete cds Length = 1269 Score = 79.8 bits (40), Expect = 1e-11 Identities = 94/112 (83%) Strand = Plus / Plus Query: 508 atggagggaaggaggaatcgaggaaatccaactacaccgatatggttaataaatactatg 567 ||||||| || |||||| ||| ||| |||| || || || ||||||||||| ||||||| Sbjct: 131 atggaggaaacgaggaagagagaaaagccaattatactgacatggttaataagtactatg 190 Query: 568 atcttgctactagcttctacgagtatggctggggtgaatccttccactttgc 619 | |||||||||||||| || ||||| || ||||| ||||||||||| ||||| Sbjct: 191 accttgctactagcttttatgagtacggatggggagaatccttccattttgc 242
>gb|U81313.1|RCU81313 Ricinus communis sterol-C-methyltransferase mRNA, complete cds Length = 1328 Score = 75.8 bits (38), Expect = 2e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 486 tatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactacacc 545 |||||||| ||||||| ||||||||||| || ||| ||| ||| |||||||||| Sbjct: 115 tatgagaagtatcatgtctattatggaggtgcagaagaagagagaaaagccaactacact 174 Query: 546 gatatggttaataaatactatgatcttgctactagcttctacgagtatggctggggtgaa 605 || ||||| ||||||||||||||||||| ||||||||| || |||| |||||||| || Sbjct: 175 gacatggtcaataaatactatgatcttgttactagcttttatgagttcggctggggagag 234 Query: 606 tccttccactttgc 619 || ||||| ||||| Sbjct: 235 tctttccattttgc 248
>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12 Length = 79259 Score = 73.8 bits (37), Expect = 6e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 551 ggttaataaatactatgatcttgctactagcttctacgagtatggctggggtgaatcctt 610 ||||||||| |||||||| |||||||||||||| || ||||| || ||||| |||||||| Sbjct: 69103 ggttaataagtactatgaccttgctactagcttttatgagtacggatggggagaatcctt 69044 Query: 611 ccactttgc 619 ||| ||||| Sbjct: 69043 ccattttgc 69035
>gb|AF053766.1|AF053766 Nicotiana tabacum S-adenosyl-methionine cycloartenol-C24-methyltransferase mRNA, complete cds Length = 1136 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 549 atggttaataaatactatgatcttgctactagcttctacgagtatggctggggtgaatcc 608 |||||||| ||||||||||||||| | || |||||||| || ||||||||||| ||||| Sbjct: 187 atggttaacaaatactatgatctttccaccagcttctatgaatatggctggggagaatca 246 Query: 609 ttccactttgc 619 ||||| ||||| Sbjct: 247 ttccattttgc 257
>gb|AC142396.25| Medicago truncatula clone mth2-6g9, complete sequence Length = 106058 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 551 ggttaataaatactatgatcttgctactagcttctacgagtatggctggggtgaatcctt 610 |||||||||||||||||||||||| || ||||| || || | ||||||||| ||||| || Sbjct: 54552 ggttaataaatactatgatcttgcgacaagcttttatgaatttggctggggggaatcttt 54611 Query: 611 cca 613 ||| Sbjct: 54612 cca 54614
>gb|U81312.1|NTU81312 Nicotiana tabacum S-adenosyl-methionine-sterol-C-methyltransferase mRNA, complete cds Length = 1444 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 549 atggttaataaatactatgatcttgctactagcttctacgagtatggctggggtgaatcc 608 |||||||| ||||||||||||||| |||||||||||||| || |||||||| || || Sbjct: 259 atggttaacaaatactatgatctttgcactagcttctacgaatacggctggggagagtca 318 Query: 609 ttccactttgc 619 ||||| ||||| Sbjct: 319 ttccattttgc 329
>ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA Length = 993 Score = 54.0 bits (27), Expect = 6e-04 Identities = 105/131 (80%) Strand = Plus / Plus Query: 483 aggtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactac 542 ||||||||||| ||||||| | ||||||||| | | |||||| |||| |||||||||| Sbjct: 28 aggtatgagaattatcatgaaatttatggaggtgaagtggaatcaaggacatccaactac 87 Query: 543 accgatatggttaataaatactatgatcttgctactagcttctacgagtatggctggggt 602 | ||| ||| || || || |||||||||| || || |||||||| || |||||||| Sbjct: 88 gctgatttggcaaacaagtattatgatcttgtcaccagtttctacgaatacggctgggga 147 Query: 603 gaatccttcca 613 ||||| ||||| Sbjct: 148 gaatcattcca 158
>gb|BT013908.1| Lycopersicon esculentum clone 132905F, mRNA sequence Length = 1437 Score = 46.1 bits (23), Expect = 0.14 Identities = 68/83 (81%) Strand = Plus / Plus Query: 537 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 596 |||||||| || ||||| || ||||||||||||||| || |||||||| || || || Sbjct: 236 aactacactgacatggtaaacaaatactatgatctttgcaccagcttctatgaatacgga 295 Query: 597 tggggtgaatccttccactttgc 619 ||||| || |||||||| ||||| Sbjct: 296 tggggagagtccttccattttgc 318
>emb|AL357083.19| Human DNA sequence from clone RP11-562P17 on chromosome 13 Contains part of the NEAB gene for neurobeachin (BCL8B FLJ10197 KIAA1544) and a prohibitin (PHB) pseudogene, complete sequence Length = 134156 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 38 tttaagtctttaattgattaaatgcac 64 ||||||| ||||||||||||||||||| Sbjct: 46704 tttaagtgtttaattgattaaatgcac 46730
>gb|AF228730.8| Homo sapiens chromosome 8 clones SCb-332a23, CTB-415D8 map p23.1, complete sequences Length = 295854 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 141268 acatttaagtctttaattgatt 141247 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 92679 acatttaagtctttaattgatt 92700
>gb|AC092902.10| Homo sapiens 3 BAC RP11-379B18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 124071 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 45449 acatttaagtctttaattgatt 45470
>gb|AC079781.7| Homo sapiens BAC clone RP11-380G21 from 7, complete sequence Length = 97556 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 49740 acatttaagtctttaattgatt 49719
>emb|AL034410.9|HS774G10 Human DNA sequence from clone RP4-774G10 on chromosome Xp11.23-11.3 Contains a proliferating cell nuclear antigen (PCNA) pseudogene, complete sequence Length = 155021 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 8484 acatttaagtctttaattgatt 8463
>gb|AC183110.3| Pan troglodytes BAC clone CH251-353M12 from chromosome 8, complete sequence Length = 165123 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 33295 acatttaagtctttaattgatt 33316
>gb|AC011146.10| Homo sapiens chromosome 8, clone RP11-2F15, complete sequence Length = 156951 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 38298 acatttaagtctttaattgatt 38277
>gb|AC097493.3| Homo sapiens BAC clone RP11-264E23 from 4, complete sequence Length = 163639 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 118990 acatttaagtctttaattgatt 119011
>gb|AC018884.6| Homo sapiens BAC clone RP11-369I16 from 4, complete sequence Length = 166300 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 146761 acatttaagtctttaattgatt 146740
>gb|AC073648.7| Homo sapiens BAC clone RP11-747H12 from 4, complete sequence Length = 180659 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 62242 acatttaagtctttaattgatt 62221
>gb|AC097480.3| Homo sapiens BAC clone RP11-123O22 from 4, complete sequence Length = 168994 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 54163 acatttaagtctttaattgatt 54184
>gb|AC096561.1| Homo sapiens BAC clone RP11-257D7 from 2, complete sequence Length = 170304 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 169108 acatttaagtctttaattgatt 169129
>gb|AC105233.12| Homo sapiens chromosome 8, clone RP11-52B19, complete sequence Length = 151841 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 24080 acatttaagtctttaattgatt 24059
>gb|AC074233.6| Homo sapiens BAC clone RP11-77O22 from 2, complete sequence Length = 58626 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 804 acatttaagtctttaattgatt 825
>dbj|AP003498.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-167J8, complete sequence Length = 120199 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 acatttaagtctttaattgatt 56 |||||||||||||||||||||| Sbjct: 27077 acatttaagtctttaattgatt 27098
>emb|Z95624.1|HSU237H1 Human DNA sequence from clone LL0XNC01-237H1 on chromosome X Contains a novel gene, a novel protein similar to RAB40A member of RAS oncogene family (RAB40A) and the 3' end of a novel gene, complete sequence Length = 37322 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 acatttaagtctttaattgat 55 ||||||||||||||||||||| Sbjct: 31281 acatttaagtctttaattgat 31301
>emb|AL354750.12| Human DNA sequence from clone RP11-195O1 on chromosome 10 Contains the 3' end of a novel gene novel protein (FLJ32762) (FLJ25419), a nuclear DNA-binding protein (C1D) pseudogene, the 5' end of a novel gene (FLJ13031) and two CpG islands, complete sequence Length = 186856 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 catttaagtctttaattgatt 56 ||||||||||||||||||||| Sbjct: 81368 catttaagtctttaattgatt 81388
>emb|AL353148.8| Human DNA sequence from clone RP11-298H24 on chromosome 10 Contains a novel gene, complete sequence Length = 181308 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 acatttaagtctttaattgat 55 ||||||||||||||||||||| Sbjct: 8939 acatttaagtctttaattgat 8959
>emb|AL157366.12| Human DNA sequence from clone RP11-467D10 on chromosome 13 Contains part of the ATP8A2 gene for ATPase, aminophospholipid transporter-like, Class I, type 8A, member 2 (ML-1 protein (IB, ATP, ML-1, ATPIB, DKFZP434B1913)) and a novel pseudogene, complete sequence Length = 37433 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 ttccacatttaagtctttaat 51 ||||||||||||||||||||| Sbjct: 7033 ttccacatttaagtctttaat 7013
>emb|AL135940.11| Human DNA sequence from clone RP5-896L12 on chromosome 20 Contains STSs and GSSs, complete sequence Length = 105964 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 acatttaagtctttaattgat 55 ||||||||||||||||||||| Sbjct: 105567 acatttaagtctttaattgat 105547
>emb|BX511068.5| Zebrafish DNA sequence from clone RP71-56H12 in linkage group 8, complete sequence Length = 108031 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 37 atttaagtctttaattgattaaatg 61 |||||||| |||||||||||||||| Sbjct: 91418 atttaagtatttaattgattaaatg 91394
>gb|AC020782.12| Homo sapiens chromosome 8, clone RP11-562L3, complete sequence Length = 104745 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 acatttaagtctttaattgat 55 ||||||||||||||||||||| Sbjct: 59400 acatttaagtctttaattgat 59420
>gb|AC010595.7| Homo sapiens chromosome 5 clone CTC-480C2, complete sequence Length = 179484 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 acatttaagtctttaattgat 55 ||||||||||||||||||||| Sbjct: 54067 acatttaagtctttaattgat 54087
>gb|AC027613.6| Homo sapiens BAC clone RP11-166J5 from 4, complete sequence Length = 154163 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 acatttaagtctttaattgat 55 ||||||||||||||||||||| Sbjct: 93860 acatttaagtctttaattgat 93880
>gb|AC079997.6| Homo sapiens BAC clone RP11-748B21 from 2, complete sequence Length = 118577 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 acatttaagtctttaattgat 55 ||||||||||||||||||||| Sbjct: 31849 acatttaagtctttaattgat 31829
>gb|AC092607.2| Homo sapiens BAC clone RP11-154E5 from 2, complete sequence Length = 74965 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 acatttaagtctttaattgat 55 ||||||||||||||||||||| Sbjct: 11577 acatttaagtctttaattgat 11557
>gb|AC099744.3| Papio anubis clone RP41-65E12, complete sequence Length = 173295 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 acatttaagtctttaattgat 55 ||||||||||||||||||||| Sbjct: 159527 acatttaagtctttaattgat 159507
>emb|CT573100.6| Mouse DNA sequence from clone RP23-218E7 on chromosome 12, complete sequence Length = 183966 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 491 gaaatatcatggatattatgg 511 ||||||||||||||||||||| Sbjct: 32115 gaaatatcatggatattatgg 32135
>gb|U28658.1|PPU28658 Pichia pastoris inducible acid phosphatase (PHO1) gene, complete cds Length = 1650 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 530 gaaatccaactacaccgatatggtt 554 |||||| |||||||||||||||||| Sbjct: 680 gaaatctaactacaccgatatggtt 704
>gb|AC113055.9| Mus musculus chromosome 5, clone RP23-251M20, complete sequence Length = 185733 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 tgttttgcctctgcacacac 330 |||||||||||||||||||| Sbjct: 86176 tgttttgcctctgcacacac 86157
>ref|XM_518630.1| PREDICTED: Pan troglodytes similar to arginyl-tRNA synthetase-like; arginine-tRNA ligase (LOC462875), mRNA Length = 2148 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gagtcttcattccctgtact 383 |||||||||||||||||||| Sbjct: 1414 gagtcttcattccctgtact 1395
>gb|AC005741.1| Homo sapiens chromosome 5, BAC clone 147L15 (LBNL H90), complete sequence Length = 119196 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 atttaagtctttaattgatt 56 |||||||||||||||||||| Sbjct: 14770 atttaagtctttaattgatt 14751
>gb|AC146525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0060D22 map near S6115, complete sequence Length = 139929 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 tttatgttcattcacttctt 404 |||||||||||||||||||| Sbjct: 21786 tttatgttcattcacttctt 21805
>gb|AC079632.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0046L02, complete sequence Length = 142381 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 560 atactatgatcttgctactagcttctac 587 ||||||||||||||||| ||||| |||| Sbjct: 109502 atactatgatcttgctagtagctactac 109529
>gb|BC010420.1| Homo sapiens arginyl-tRNA synthetase-like, mRNA (cDNA clone MGC:14993 IMAGE:3613406), complete cds Length = 1830 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gagtcttcattccctgtact 383 |||||||||||||||||||| Sbjct: 1202 gagtcttcattccctgtact 1183
>gb|BC116008.1| Bos taurus cDNA clone MGC:138908 IMAGE:8081054, complete cds Length = 1606 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 ttatttttgccttgtcccac 452 |||||||||||||||||||| Sbjct: 51 ttatttttgccttgtcccac 70
>ref|NM_020320.2| Homo sapiens arginyl-tRNA synthetase-like (RARSL), mRNA Length = 1830 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gagtcttcattccctgtact 383 |||||||||||||||||||| Sbjct: 1202 gagtcttcattccctgtact 1183
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.5 Identities = 50/60 (83%) Strand = Plus / Minus Query: 483 aggtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactac 542 ||||||||||| ||||||| | ||||||||| | | |||||| |||| |||||||||| Sbjct: 33455137 aggtatgagaattatcatgaaatttatggaggtgaagtggaatcaaggacatccaactac 33455078
>gb|AC132264.3| Mus musculus BAC clone RP24-371N18 from chromosome 19, complete sequence Length = 125468 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 cttgttagccggagtcttca 372 |||||||||||||||||||| Sbjct: 48343 cttgttagccggagtcttca 48324
>gb|AC133604.3| Mus musculus BAC clone RP23-416F12 from chromosome 8, complete sequence Length = 221603 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ccacatttaagtctttaatt 52 |||||||||||||||||||| Sbjct: 102476 ccacatttaagtctttaatt 102495
>gb|AC122337.4| Mus musculus BAC clone RP23-351M10 from chromosome 12, complete sequence Length = 196396 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 ttatttttgccttgtcccac 452 |||||||||||||||||||| Sbjct: 33903 ttatttttgccttgtcccac 33884
>gb|BC022341.1| Homo sapiens arginyl-tRNA synthetase-like, mRNA (cDNA clone MGC:23778 IMAGE:4134618), complete cds Length = 1819 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gagtcttcattccctgtact 383 |||||||||||||||||||| Sbjct: 1182 gagtcttcattccctgtact 1163
>gb|BC006261.1| Homo sapiens cDNA clone IMAGE:3947934, **** WARNING: chimeric clone **** Length = 3182 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gagtcttcattccctgtact 383 |||||||||||||||||||| Sbjct: 317 gagtcttcattccctgtact 298
>emb|AL606833.8| Human DNA sequence from clone RP11-647M7 on chromosome X Contains the 3' end of gene FLJ10178 and the 5' end of the RNF128 gene for ring finger protein 128, complete sequence Length = 59947 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 atttaagtctttaattgatt 56 |||||||||||||||||||| Sbjct: 43910 atttaagtctttaattgatt 43891
>gb|BC105784.1| Homo sapiens arginyl-tRNA synthetase-like, mRNA (cDNA clone IMAGE:4685309) Length = 1970 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gagtcttcattccctgtact 383 |||||||||||||||||||| Sbjct: 1335 gagtcttcattccctgtact 1316
>emb|AL583853.6| Human DNA sequence from clone RP11-139I17 on chromosome 6 Contains part of the LAMA2 gene for laminin, alpha 2 (merosin, congenital muscular dystrophy) (LAMM), complete sequence Length = 169288 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 catttaagtctttaattgat 55 |||||||||||||||||||| Sbjct: 83121 catttaagtctttaattgat 83140
>emb|AL358119.12| Human DNA sequence from clone RP11-331P7 on chromosome 1, complete sequence Length = 157124 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 atttaagtctttaattgatt 56 |||||||||||||||||||| Sbjct: 149328 atttaagtctttaattgatt 149347
>emb|AL353899.22| Human DNA sequence from clone RP11-217A12 on chromosome 1 Contains the 3' end of the gene for immunoglobulin superfamily receptor translocation associated 2 (IRTA2), complete sequence Length = 135733 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 atttaagtctttaattgatt 56 |||||||||||||||||||| Sbjct: 73512 atttaagtctttaattgatt 73531
>emb|AL138900.12| Human DNA sequence from clone RP11-85G21 on chromosome 1 Contains a novel gene, complete sequence Length = 182025 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 atttaagtctttaattgatt 56 |||||||||||||||||||| Sbjct: 165304 atttaagtctttaattgatt 165285
>emb|AL135926.12| Human DNA sequence from clone RP11-375F2 on chromosome 1 Contains a ubiquitin-like 1 (sentrin) (UBL1) pseudogene, the 3' end of a novel gene and a ribosomal protein L29 (RPL29) pseudogene, complete sequence Length = 158519 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 atttaagtctttaattgatt 56 |||||||||||||||||||| Sbjct: 123494 atttaagtctttaattgatt 123475
>emb|AL122016.15|HSJ161C16 Human DNA sequence from clone RP1-161C16 on chromosome 6q14.2-15 Contains a ribosomal protein L31 (RPL31) pseudogene, complete sequence Length = 111453 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 atttaagtctttaattgatt 56 |||||||||||||||||||| Sbjct: 400 atttaagtctttaattgatt 419
>emb|AL049697.9|HSJ382I10 Human DNA sequence from clone RP3-382I10 on chromosome 6q14.3-15 Contains a novel gene, a TAF13 RNA polymerase II, TATA box binding protei (TBP)-associated factor (TAF13) (TAF2K) pseudogene, an S-adenosylmethionine decarboxylase 1 (AMD1) pseudogene, a suppression of tumorigenicity 13 (colon carcinoma) (Hsp70-interacting protein) (ST13) (HIP) pseudogene, the SLC35A1 gene for solute carrier family 35 (CMP-sialic acid transporter) member 1, the 3' end of the gene for a novel protein similar to arginyl-tRNA synthetase (arginine-tRNA ligase, EC 6.1.1.19) and two CpG islands, complete sequence Length = 141207 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 gagtcttcattccctgtact 383 |||||||||||||||||||| Sbjct: 118102 gagtcttcattccctgtact 118121
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 560 atactatgatcttgctactagcttctac 587 ||||||||||||||||| ||||| |||| Sbjct: 123608 atactatgatcttgctagtagctactac 123635
>emb|CR858907.1| Pongo pygmaeus mRNA; cDNA DKFZp468H102 (from clone DKFZp468H102) Length = 1941 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gagtcttcattccctgtact 383 |||||||||||||||||||| Sbjct: 1321 gagtcttcattccctgtact 1302
>emb|CR857556.1| Pongo pygmaeus mRNA; cDNA DKFZp468C2410 (from clone DKFZp468C2410) Length = 1801 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gagtcttcattccctgtact 383 |||||||||||||||||||| Sbjct: 1175 gagtcttcattccctgtact 1156
>emb|CR625441.1| full-length cDNA clone CS0DH004YF11 of T cells (Jurkat cell line) of Homo sapiens (human) Length = 1679 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gagtcttcattccctgtact 383 |||||||||||||||||||| Sbjct: 1170 gagtcttcattccctgtact 1151
>emb|CR611793.1| full-length cDNA clone CS0DM004YP01 of Fetal liver of Homo sapiens (human) Length = 1959 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gagtcttcattccctgtact 383 |||||||||||||||||||| Sbjct: 1380 gagtcttcattccctgtact 1361
>dbj|AK093934.1| Homo sapiens cDNA FLJ36615 fis, clone TRACH2016384, weakly similar to ARGINYL-TRNA SYNTHETASE, CYTOPLASMIC (EC 6.1.1.19) Length = 2213 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gagtcttcattccctgtact 383 |||||||||||||||||||| Sbjct: 1604 gagtcttcattccctgtact 1585
>dbj|AK023550.1| Homo sapiens cDNA FLJ13488 fis, clone PLACE1003915, weakly similar to PROBABLE ARGINYL-TRNA SYNTHETASE, CYTOPLASMIC (EC 6.1.1.19) Length = 1783 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gagtcttcattccctgtact 383 |||||||||||||||||||| Sbjct: 1174 gagtcttcattccctgtact 1155
>gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 117636 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 ttcttgagcaaaaaatttgtttat 423 |||||||||||||||| ||||||| Sbjct: 93323 ttcttgagcaaaaaatatgtttat 93300
>gb|AC079408.25| Homo sapiens 12q BAC RP11-601I4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152050 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 actgtttatgttcattcacttctt 404 ||||||||| |||||||||||||| Sbjct: 133342 actgtttatcttcattcacttctt 133319
>gb|AC019133.8| Homo sapiens BAC clone RP11-577G20 from 4, complete sequence Length = 185556 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 atttaagtctttaattgatt 56 |||||||||||||||||||| Sbjct: 139885 atttaagtctttaattgatt 139904
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cagtgtgctggcaccacaag 111 |||||||||||||||||||| Sbjct: 846187 cagtgtgctggcaccacaag 846206
>gb|AC093545.1| Homo sapiens chromosome X clone RP5-1015P16A, complete sequence Length = 174725 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 cacatttaagtctttaattgatta 57 ||||||||||||||||||| |||| Sbjct: 154330 cacatttaagtctttaattcatta 154353
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 40.1 bits (20), Expect = 8.5 Identities = 50/60 (83%) Strand = Plus / Plus Query: 483 aggtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactac 542 ||||||||||| ||||||| | ||||||||| | | |||||| |||| |||||||||| Sbjct: 42974 aggtatgagaattatcatgaaatttatggaggtgaagtggaatcaaggacatccaactac 43033
>gb|AC068561.2|AC068561 Mus musculus strain C57BL6/J chromosome 6 clone RP23-86H7, complete sequence Length = 230839 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 tgttttgcctctgcacacac 330 |||||||||||||||||||| Sbjct: 78707 tgttttgcctctgcacacac 78726
>gb|AC091634.1|AC091634 Drosophila melanogaster, chromosome 2R, region 50A-50B, BAC clone BACR36J03, complete sequence Length = 159065 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 cgtcagtgtgctggcaccac 108 |||||||||||||||||||| Sbjct: 47447 cgtcagtgtgctggcaccac 47428
>gb|AC010139.4|AC010139 Homo sapiens BAC clone RP11-194G10 from 3, complete sequence Length = 161407 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 atttaagtctttaattgatt 56 |||||||||||||||||||| Sbjct: 98674 atttaagtctttaattgatt 98655
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 tttatgttcattcacttctt 404 |||||||||||||||||||| Sbjct: 12353711 tttatgttcattcacttctt 12353692
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 560 atactatgatcttgctactagcttctac 587 ||||||||||||||||| ||||| |||| Sbjct: 123608 atactatgatcttgctagtagctactac 123635
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.5 Identities = 50/60 (83%) Strand = Plus / Minus Query: 483 aggtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactac 542 ||||||||||| ||||||| | ||||||||| | | |||||| |||| |||||||||| Sbjct: 33545647 aggtatgagaattatcatgaaatttatggaggtgaagtggaatcaaggacatccaactac 33545588
>gb|AC007329.7|AC007329 Drosophila melanogaster, chromosome 2R, region 50B-50C, BAC clone BACR14P04, complete sequence Length = 126140 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cgtcagtgtgctggcaccac 108 |||||||||||||||||||| Sbjct: 24195 cgtcagtgtgctggcaccac 24214
>gb|AC125611.4| Homo sapiens 12 BAC RP11-161H23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194578 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 tatgtgttttgcctctgcac 326 |||||||||||||||||||| Sbjct: 192629 tatgtgttttgcctctgcac 192648
>gb|AC090764.35| Homo sapiens chromosome 15, clone RP11-289D12, complete sequence Length = 137300 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ccacatttaagtctttaatt 52 |||||||||||||||||||| Sbjct: 90605 ccacatttaagtctttaatt 90586
>gb|AC019067.9| Homo sapiens BAC clone RP11-171B14 from 2, complete sequence Length = 169928 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 atttaagtctttaattgatt 56 |||||||||||||||||||| Sbjct: 26705 atttaagtctttaattgatt 26724
>gb|AC135069.17| Homo sapiens chromosome 15, clone RP11-1081C20, complete sequence Length = 222726 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ccacatttaagtctttaatt 52 |||||||||||||||||||| Sbjct: 69742 ccacatttaagtctttaatt 69723
>gb|AC091493.2| Homo sapiens chromosome 3 clone RP11-357E4 map 3p, complete sequence Length = 186953 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 atttaagtctttaattgatt 56 |||||||||||||||||||| Sbjct: 3907 atttaagtctttaattgatt 3888
>gb|AC153100.3| Oryctolagus cuniculus clone LB1-192J7, complete sequence Length = 132131 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cagtgtgctggcaccacaag 111 |||||||||||||||||||| Sbjct: 12407 cagtgtgctggcaccacaag 12426
>gb|AC158647.2| Mus musculus 6 BAC RP23-275N13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208007 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 tgttttgcctctgcacacac 330 |||||||||||||||||||| Sbjct: 5245 tgttttgcctctgcacacac 5264
>dbj|BS000049.1| Pan troglodytes chromosome 22 clone:RP43-069C10, map 22, complete sequences Length = 53074 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 caaattccacatttaagtctttaa 50 ||||| |||||||||||||||||| Sbjct: 33770 caaatgccacatttaagtctttaa 33793
>gb|AC007486.1|AC007486 Homo sapiens clone DJ1015P16A, complete sequence Length = 174725 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 cacatttaagtctttaattgatta 57 ||||||||||||||||||| |||| Sbjct: 154330 cacatttaagtctttaattcatta 154353
>gb|AE003818.3| Drosophila melanogaster chromosome 2R, section 32 of 73 of the complete sequence Length = 291923 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cgtcagtgtgctggcaccac 108 |||||||||||||||||||| Sbjct: 276068 cgtcagtgtgctggcaccac 276087
>emb|AL358293.4|CNS05TE0 Human chromosome 14 DNA sequence BAC R-398E10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 197927 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 atttaagtctttaattgatt 56 |||||||||||||||||||| Sbjct: 159188 atttaagtctttaattgatt 159169
>dbj|AP001675.1| Homo sapiens genomic DNA, chromosome 21q, section 19/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 caaattccacatttaagtctttaa 50 ||||| |||||||||||||||||| Sbjct: 109452 caaatgccacatttaagtctttaa 109475
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 tttttaaggcctgaaccatg 233 |||||||||||||||||||| Sbjct: 29760 tttttaaggcctgaaccatg 29741
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 tttttaaggcctgaaccatg 233 |||||||||||||||||||| Sbjct: 29757 tttttaaggcctgaaccatg 29738
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 560 atactatgatcttgctactagcttctac 587 ||||||||||||||||| ||||| |||| Sbjct: 123606 atactatgatcttgctagtagctactac 123633
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 tttatgttcattcacttctt 404 |||||||||||||||||||| Sbjct: 12433018 tttatgttcattcacttctt 12432999
>emb|BX897750.11| Zebrafish DNA sequence from clone DKEY-278N18, complete sequence Length = 182033 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 tttatgttcattcacttctt 404 |||||||||||||||||||| Sbjct: 152046 tttatgttcattcacttctt 152027
>emb|AL672270.12| Mouse DNA sequence from clone RP23-351A10 on chromosome X, complete sequence Length = 220691 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tccacatttaagtctttaat 51 |||||||||||||||||||| Sbjct: 49339 tccacatttaagtctttaat 49320
>emb|AL160233.3|CNS01RGX Human chromosome 14 DNA sequence BAC C-2373J19 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 139887 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 atttaagtctttaattgatt 56 |||||||||||||||||||| Sbjct: 117024 atttaagtctttaattgatt 117043
>gb|AC010173.27| Homo sapiens 12 BAC RP11-977B10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 98085 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 tatgtgttttgcctctgcac 326 |||||||||||||||||||| Sbjct: 98031 tatgtgttttgcctctgcac 98012
>dbj|AP000431.3| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B28M9, LL56-APP region, complete sequence Length = 152487 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 caaattccacatttaagtctttaa 50 ||||| |||||||||||||||||| Sbjct: 148819 caaatgccacatttaagtctttaa 148842 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,855,777 Number of Sequences: 3902068 Number of extensions: 5855777 Number of successful extensions: 141541 Number of sequences better than 10.0: 123 Number of HSP's better than 10.0 without gapping: 123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 140951 Number of HSP's gapped (non-prelim): 584 length of query: 623 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 600 effective length of database: 17,143,297,704 effective search space: 10285978622400 effective search space used: 10285978622400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)