ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdh03 |
|---|---|
| Clone Library Name | barley_pub |
>NOLA3_BRARE (Q6DRH5) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) Length = 64 Score = 35.0 bits (79), Expect(2) = 1e-05 Identities = 15/22 (68%), Positives = 18/22 (81%) Frame = +1 Query: 55 DKYARQRYLLKKRFGLLPTQQP 120 DK++R R +KKRFGLL TQQP Sbjct: 39 DKFSRHRVTIKKRFGLLLTQQP 60 Score = 31.6 bits (70), Expect(2) = 1e-05 Identities = 13/16 (81%), Positives = 13/16 (81%) Frame = +3 Query: 3 PLGVPTQSAHPARFSP 50 P G PT SAHPARFSP Sbjct: 22 PSGQPTSSAHPARFSP 37
>NOLA3_DROME (Q9V5P6) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein dNop10) Length = 64 Score = 37.7 bits (86), Expect(2) = 2e-05 Identities = 17/26 (65%), Positives = 20/26 (76%) Frame = +1 Query: 55 DKYARQRYLLKKRFGLLPTQQPAQKY 132 DKY+RQR +KKRFGLL TQ+P Y Sbjct: 39 DKYSRQRLTIKKRFGLLLTQKPEPIY 64 Score = 28.5 bits (62), Expect(2) = 2e-05 Identities = 12/14 (85%), Positives = 12/14 (85%) Frame = +3 Query: 9 GVPTQSAHPARFSP 50 G PT SAHPARFSP Sbjct: 24 GRPTLSAHPARFSP 37
>NOP10_SCHPO (Q9P7M5) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein nop10) Length = 64 Score = 39.7 bits (91), Expect(2) = 2e-05 Identities = 18/26 (69%), Positives = 21/26 (80%) Frame = +1 Query: 55 DKYARQRYLLKKRFGLLPTQQPAQKY 132 DKY+RQRY LKKRF +L TQ PA+ Y Sbjct: 39 DKYSRQRYTLKKRFHVLLTQLPAKPY 64 Score = 26.2 bits (56), Expect(2) = 2e-05 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +3 Query: 3 PLGVPTQSAHPARFSP 50 P G T+S+HPARFSP Sbjct: 22 PDGRVTKSSHPARFSP 37
>NOP10_DEBHA (Q6BQP3) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 58 Score = 38.5 bits (88), Expect(2) = 5e-05 Identities = 17/20 (85%), Positives = 18/20 (90%) Frame = +1 Query: 55 DKYARQRYLLKKRFGLLPTQ 114 DKY+RQR LKKRFGLLPTQ Sbjct: 39 DKYSRQRVTLKKRFGLLPTQ 58 Score = 26.2 bits (56), Expect(2) = 5e-05 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = +3 Query: 9 GVPTQSAHPARFSP 50 G T+SAHPARFSP Sbjct: 24 GEITKSAHPARFSP 37
>NOLA3_ARATH (Q93XX8) H/ACA ribonucleoprotein complex subunit 3-like protein| Length = 64 Score = 42.4 bits (98), Expect = 3e-04 Identities = 23/44 (52%), Positives = 27/44 (61%) Frame = +1 Query: 1 PLSVCRRSLPTQLVSPRYDKYARQRYLLKKRFGLLPTQQPAQKY 132 PL + S SP DKY++QR LLKKRFGLLPTQ +Y Sbjct: 22 PLGLATESAHPARFSPD-DKYSKQRVLLKKRFGLLPTQNAPLQY 64
>NOLA3_MOUSE (Q9CQS2) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 64 Score = 32.7 bits (73), Expect(2) = 4e-04 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = +1 Query: 55 DKYARQRYLLKKRFGLLPTQQP 120 DKY+R R +KKRF +L TQQP Sbjct: 39 DKYSRHRITIKKRFKVLMTQQP 60 Score = 28.9 bits (63), Expect(2) = 4e-04 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = +3 Query: 3 PLGVPTQSAHPARFSP 50 P+G T SAHPARFSP Sbjct: 22 PMGQQTCSAHPARFSP 37
>NOLA3_HUMAN (Q9NPE3) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 64 Score = 32.7 bits (73), Expect(2) = 4e-04 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = +1 Query: 55 DKYARQRYLLKKRFGLLPTQQP 120 DKY+R R +KKRF +L TQQP Sbjct: 39 DKYSRHRITIKKRFKVLMTQQP 60 Score = 28.9 bits (63), Expect(2) = 4e-04 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = +3 Query: 3 PLGVPTQSAHPARFSP 50 P+G T SAHPARFSP Sbjct: 22 PMGQQTCSAHPARFSP 37
>NOP10_YEAST (Q6Q547) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 58 Score = 34.7 bits (78), Expect(2) = 6e-04 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = +1 Query: 55 DKYARQRYLLKKRFGLLPTQ 114 DKY+RQR LKKRFGL+P Q Sbjct: 39 DKYSRQRVTLKKRFGLVPGQ 58 Score = 26.2 bits (56), Expect(2) = 6e-04 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = +3 Query: 9 GVPTQSAHPARFSP 50 G T+SAHPARFSP Sbjct: 24 GEITKSAHPARFSP 37
>NOLA3_CAEEL (Q9XVR8) Putative H/ACA ribonucleoprotein complex subunit 3-like| protein Length = 64 Score = 32.3 bits (72), Expect(2) = 0.002 Identities = 13/21 (61%), Positives = 18/21 (85%) Frame = +1 Query: 55 DKYARQRYLLKKRFGLLPTQQ 117 DK ++ R ++KKRFGLLPTQ+ Sbjct: 39 DKNSKYRIIIKKRFGLLPTQK 59 Score = 26.6 bits (57), Expect(2) = 0.002 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +3 Query: 3 PLGVPTQSAHPARFSP 50 P G T +AHPARFSP Sbjct: 22 PSGEQTLTAHPARFSP 37
>NOP10_ASHGO (Q74Z52) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 57 Score = 30.0 bits (66), Expect(2) = 0.004 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = +1 Query: 55 DKYARQRYLLKKRFGLLP 108 DKY+RQR LK+RF +LP Sbjct: 39 DKYSRQRVTLKRRFDMLP 56 Score = 28.1 bits (61), Expect(2) = 0.004 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = +3 Query: 3 PLGVPTQSAHPARFSP 50 P G T+SAHPARFSP Sbjct: 22 PSGEITKSAHPARFSP 37
>NOP10_CANGA (Q6FNL3) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 57 Score = 31.2 bits (69), Expect(2) = 0.006 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = +1 Query: 55 DKYARQRYLLKKRFGLLP 108 DKY+RQR LKKR+ LLP Sbjct: 39 DKYSRQRVTLKKRYNLLP 56 Score = 26.2 bits (56), Expect(2) = 0.006 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = +3 Query: 9 GVPTQSAHPARFSP 50 G T+SAHPARFSP Sbjct: 24 GEITKSAHPARFSP 37
>NOP10_KLULA (Q6CSZ0) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 57 Score = 31.2 bits (69), Expect(2) = 0.008 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = +1 Query: 55 DKYARQRYLLKKRFGLLP 108 DKY+RQR LKKR+ LLP Sbjct: 39 DKYSRQRVTLKKRYNLLP 56 Score = 25.8 bits (55), Expect(2) = 0.008 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +3 Query: 18 TQSAHPARFSP 50 T+SAHPARFSP Sbjct: 27 TKSAHPARFSP 37
>NOLA3_TRYCR (Q6JZK2) H/ACA ribonucleoprotein complex subunit 3-like protein| (Ribosome biogenesis protein Nop10) Length = 63 Score = 30.4 bits (67), Expect(2) = 0.037 Identities = 13/16 (81%), Positives = 13/16 (81%) Frame = +3 Query: 3 PLGVPTQSAHPARFSP 50 P G PT SAHPARFSP Sbjct: 21 PEGKPTLSAHPARFSP 36 Score = 24.3 bits (51), Expect(2) = 0.037 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +1 Query: 55 DKYARQRYLLKKRFGLLPTQQ 117 DKY+R R +K+RF L +++ Sbjct: 38 DKYSRHRITIKRRFKALKSEK 58
>ERG28_ARATH (O80594) Probable ergosterol biosynthetic protein 28| Length = 110 Score = 29.3 bits (64), Expect = 2.5 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +1 Query: 277 LWIVLLCTMCSLCDFHLGSK 336 +W +L CT+C LC F+L +K Sbjct: 49 VWTLLTCTLCFLCAFNLENK 68
>RNF26_HUMAN (Q9BY78) RING finger protein 26| Length = 433 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%) Frame = +1 Query: 157 RDLFTLVNAVW-SVD*PCEXRT-ITATYLAHYCSTSECNAMILW 282 ++LF+LV A+W +V P T + A +LAH S++ A++LW Sbjct: 160 QNLFSLVLALWDAVTGPLWRMTDVVAAFLAHISSSAVAMAILLW 203
>PROA_PHOPR (Q6LTX2) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 418 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -1 Query: 193 HSKQHSPK*TD-LLGGPIQCFSTFVLAAGLAAIQTSSSTGNADG 65 H ++H+ +D +L IQ FV AAG AA+ ++ST DG Sbjct: 333 HMRKHNASHSDAILTNDIQSAERFVNAAGSAAVYVNASTRFTDG 376
>KR121_HUMAN (P59990) Keratin-associated protein 12-1 (Keratin-associated| protein 12.1) (High sulfur keratin-associated protein 12.1) Length = 96 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +2 Query: 2 PSRCADAVCPPSSFLPGMTSTPVSVTC*RRGLDCCQPS 115 P RC +VC P S P + + P +C G CCQPS Sbjct: 47 PVRCQSSVCVPVSCRPVVYAAP---SCQSSG--CCQPS 79
>SWC4_YEAST (P53201) SWR1-complex protein 4 (ESA1-associated factor 2)| Length = 476 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +1 Query: 22 SLPTQLVSPRYDKYARQRYLLKKRFGLLPTQQPAQKY 132 SLP++ V P +D RQ LLKK L+ ++ KY Sbjct: 432 SLPSRPVMPSFDVMERQEELLKKINTLIDLKKHVDKY 468
>GR98A_DROME (Q9VB30) Putative gustatory receptor 98a| Length = 391 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 223 TATYLAHYCSTSECNAMILWIVLLCTMCSLCD 318 T + HY +T EC +L IV+ C +C+ CD Sbjct: 266 TRVAVQHYVATVEC-IKLLEIVVPCYLCTRCD 296
>NET2_CHICK (Q90923) Netrin-2 precursor (Fragment)| Length = 581 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -1 Query: 163 DLLGGPIQCFSTFVLAAGLAAIQTSSSTGNADGRTCHTGEKR 38 D G P +C FV AA +Q SS+ G R C + R Sbjct: 31 DESGAPRRCIPEFVNAAFGKEVQASSTCGKPPTRHCDASDPR 72
>STAT2_HUMAN (P52630) Signal transducer and activator of transcription 2 (p113)| Length = 851 Score = 27.3 bits (59), Expect = 9.6 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 5/71 (7%) Frame = -1 Query: 220 WFXXHMANLHSKQ---HSPK*TDLLGGPIQC--FSTFVLAAGLAAIQTSSSTGNADGRTC 56 WF NL ++Q + PK L GP FS++V GL + Q S G+ C Sbjct: 471 WFNLLSPNLQNQQFFSNPPKAPWSLLGPALSWQFSSYV-GRGLNSDQLSMLRNKLFGQNC 529 Query: 55 HTGEKRAGWAD 23 T + WAD Sbjct: 530 RTEDPLLSWAD 540
>T2R34_MOUSE (Q7TQB0) Putative taste receptor type 2 member 34 (T2R34)| Length = 298 Score = 27.3 bits (59), Expect = 9.6 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +1 Query: 205 CEXRTITATYLAHYCSTSECNAMILWIV 288 CE TI +A Y C+AM++W++ Sbjct: 156 CENYTIYYKMMAFYLYYFRCHAMLMWVI 183
>Y1668_NITEU (Q82U41) UPF0301 protein NE1668| Length = 186 Score = 27.3 bits (59), Expect = 9.6 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = -1 Query: 160 LLGGPIQCFSTFVLAAGLAAIQTSSSTGNADGRTCHTGEKRAGWADCVGTPR 5 LLGGP+Q S FVL + + + + S+ + G T +A ADC G R Sbjct: 72 LLGGPVQIDSGFVLHEPVGSWKFTLSSNESIGLTSSADILQA-VADCEGPKR 122
>CTL1_TORMA (Q9I9B9) Choline transporter-like protein 1| Length = 646 Score = 27.3 bits (59), Expect = 9.6 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = +1 Query: 163 LFTLVNAVWSVD*--PCEXRTITATYLAHYCSTSECNAMILWIVLLCTMCSLCDFHLGSK 336 ++ LV +W + C+ TI + +Y + + N I L +MC L +HLG+ Sbjct: 379 IYHLVGLIWISEFILACQQMTIAGAVVTYYFTRDKHNLPATPI--LASMCRLIKYHLGTV 436 Query: 337 KK 342 K Sbjct: 437 AK 438
>DPOL_HBVWJ (P17394) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 843 Score = 27.3 bits (59), Expect = 9.6 Identities = 18/50 (36%), Positives = 22/50 (44%) Frame = -2 Query: 240 SKISSSNGSXFTWLIYTPNSIHQSKQIS*EDPFSASVLLCWLLGWQQSKP 91 SK SS+G + PNS Q SVL CW L ++ SKP Sbjct: 292 SKGHSSSGHAVELHHFPPNSSRSQSQ--------GSVLSCWWLQFRNSKP 333 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,976,174 Number of Sequences: 219361 Number of extensions: 865548 Number of successful extensions: 2150 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2149 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
