ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdi02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465299.1| Oryza sativa (japonica cultivar-group), mRNA 180 4e-42
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
3dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
4dbj|AP005011.3| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
5dbj|AK069802.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 4e-42
6gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.009
7gb|AC025098.5| Oryza sativa (japonica cultivar-group) chromosome... 50 0.009
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.009
10ref|XM_463522.1| Oryza sativa (japonica cultivar-group), predic... 48 0.036
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
12dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
13dbj|AK105949.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.036
14dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
15ref|XM_550035.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.57
16ref|NM_001030564.1| Gallus gallus Vac14 homolog (S. cerevisiae) ... 44 0.57
17emb|AJ720669.1| Gallus gallus mRNA for hypothetical protein, clo... 44 0.57
18emb|BX933531.2| Gallus gallus finished cDNA, clone ChEST47n11 44 0.57
19dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.57
20gb|AY297289.1| Salticus scenicus 28S ribosomal RNA gene, partial... 42 2.2
21gb|AY297285.1| Cf. Neaetha sp. MCH-2003 28S ribosomal RNA gene, ... 42 2.2
22ref|XM_743909.1| Aspergillus fumigatus Af293 C6 transcription fa... 42 2.2
23gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 2.2
24gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome 40 8.9
25ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predic... 40 8.9
26gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 40 8.9
27gb|DQ306875.1| Bradyrhizobium sp. UPM1029 hydrogenase gene clust... 40 8.9
28emb|CR381676.9| Zebrafish DNA sequence from clone CH211-11J2 in ... 40 8.9
29gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 8.9
30emb|AL157878.11| Human DNA sequence from clone RP11-51B13 on chr... 40 8.9
31gb|AC020980.6| Homo sapiens chromosome 5 clone RPCI-1_167G20, co... 40 8.9
32gb|AC158242.4| Pan troglodytes BAC clone CH251-354C10 from chrom... 40 8.9
33gb|AC156945.2| Pan troglodytes BAC clone CH251-464H12 from chrom... 40 8.9
34dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
35emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 8.9
36gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 8.9
37dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9 
>ref|XM_465299.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1741

 Score =  180 bits (91), Expect = 4e-42
 Identities = 177/205 (86%), Gaps = 3/205 (1%)
 Strand = Plus / Plus

                                                                        
Query: 16   catggtggaagctgaacggcgtctcctggctcacgcgttgctggaccactctaacgcccg 75
            |||||||||||| || |||||||||||||| |||||| ||||||||||  | ||||||||
Sbjct: 883  catggtggaagccgagcggcgtctcctggcgcacgcgctgctggaccaggccaacgcccg 942

                                                                        
Query: 76   cttcatcctcctatcggagtcgcacgtcccgctcttcgacttccccaccgtctactccta 135
             ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 943  gttcatcctcctgtcggagtcgcacgtcccgctcttcgacttccccacggtctactcgta 1002

                                                                        
Query: 136  catcatcaactccacca---aggtgtacatggagtcctacgacgagccgggtgggacggg 192
            | |||||||||||||||   || | ||| | ||||||||||||  ||| || | ||||||
Sbjct: 1003 cctcatcaactccaccaccaagatatacctcgagtcctacgacttgccaggcgtgacggg 1062

                                     
Query: 193  tcggggccggtacaagcgcggcatg 217
             || ||||||||||| ||| |||||
Sbjct: 1063 gcgcggccggtacaaacgcagcatg 1087



 Score =  135 bits (68), Expect = 2e-28
 Identities = 178/215 (82%), Gaps = 6/215 (2%)
 Strand = Plus / Plus

                                                                        
Query: 422  acgtgggttgactggtcccatggcgggccccatccgtcgaggttcacgaggatggaggtc 481
            |||||||| ||||||||||| || || || || ||| |||||||||||||||||||||||
Sbjct: 1292 acgtgggtcgactggtcccacgggggcccgcacccggcgaggttcacgaggatggaggtc 1351

                                                                        
Query: 482  acggtggacttcctacggtggctcagaggcggg------acgacgtgcgagtataatggg 535
            |||  ||||||||| |||||||| || | ||||      || |||||||| || ||||| 
Sbjct: 1352 acgccggacttcctccggtggcttagggccggggccgggactacgtgcgactacaatggc 1411

                                                                        
Query: 536  aggaccaccaccgtctgcttcctgttcgcgaggaagttcctgcctaactcactcacccgc 595
               ||||| || |||||||||||||||||||||||||||||||| ||||| |||||| | 
Sbjct: 1412 gccaccacgacggtctgcttcctgttcgcgaggaagttcctgcccaactcgctcaccagg 1471

                                               
Query: 596  ttcttgagattcgcgccgaaggtgatgggctttgg 630
            ||| | |||||||| || ||||| |||||||||||
Sbjct: 1472 ttcctcagattcgctccaaaggtcatgggctttgg 1506



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 239  cagtggcgtaagggctcacagtggttcga 267
            |||||||| |||||||| |||||||||||
Sbjct: 1109 cagtggcgcaagggctcgcagtggttcga 1137
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  180 bits (91), Expect = 4e-42
 Identities = 177/205 (86%), Gaps = 3/205 (1%)
 Strand = Plus / Plus

                                                                            
Query: 16       catggtggaagctgaacggcgtctcctggctcacgcgttgctggaccactctaacgcccg 75
                |||||||||||| || |||||||||||||| |||||| ||||||||||  | ||||||||
Sbjct: 13201989 catggtggaagccgagcggcgtctcctggcgcacgcgctgctggaccaggccaacgcccg 13202048

                                                                            
Query: 76       cttcatcctcctatcggagtcgcacgtcccgctcttcgacttccccaccgtctactccta 135
                 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 13202049 gttcatcctcctgtcggagtcgcacgtcccgctcttcgacttccccacggtctactcgta 13202108

                                                                            
Query: 136      catcatcaactccacca---aggtgtacatggagtcctacgacgagccgggtgggacggg 192
                | |||||||||||||||   || | ||| | ||||||||||||  ||| || | ||||||
Sbjct: 13202109 cctcatcaactccaccaccaagatatacctcgagtcctacgacttgccaggcgtgacggg 13202168

                                         
Query: 193      tcggggccggtacaagcgcggcatg 217
                 || ||||||||||| ||| |||||
Sbjct: 13202169 gcgcggccggtacaaacgcagcatg 13202193



 Score =  135 bits (68), Expect = 2e-28
 Identities = 178/215 (82%), Gaps = 6/215 (2%)
 Strand = Plus / Plus

                                                                            
Query: 422      acgtgggttgactggtcccatggcgggccccatccgtcgaggttcacgaggatggaggtc 481
                |||||||| ||||||||||| || || || || ||| |||||||||||||||||||||||
Sbjct: 13202398 acgtgggtcgactggtcccacgggggcccgcacccggcgaggttcacgaggatggaggtc 13202457

                                                                            
Query: 482      acggtggacttcctacggtggctcagaggcggg------acgacgtgcgagtataatggg 535
                |||  ||||||||| |||||||| || | ||||      || |||||||| || ||||| 
Sbjct: 13202458 acgccggacttcctccggtggcttagggccggggccgggactacgtgcgactacaatggc 13202517

                                                                            
Query: 536      aggaccaccaccgtctgcttcctgttcgcgaggaagttcctgcctaactcactcacccgc 595
                   ||||| || |||||||||||||||||||||||||||||||| ||||| |||||| | 
Sbjct: 13202518 gccaccacgacggtctgcttcctgttcgcgaggaagttcctgcccaactcgctcaccagg 13202577

                                                   
Query: 596      ttcttgagattcgcgccgaaggtgatgggctttgg 630
                ||| | |||||||| || ||||| |||||||||||
Sbjct: 13202578 ttcctcagattcgctccaaaggtcatgggctttgg 13202612



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 239      cagtggcgtaagggctcacagtggttcga 267
                |||||||| |||||||| |||||||||||
Sbjct: 13202215 cagtggcgcaagggctcgcagtggttcga 13202243
to top
>dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0042G06
          Length = 123571

 Score =  180 bits (91), Expect = 4e-42
 Identities = 177/205 (86%), Gaps = 3/205 (1%)
 Strand = Plus / Plus

                                                                         
Query: 16    catggtggaagctgaacggcgtctcctggctcacgcgttgctggaccactctaacgcccg 75
             |||||||||||| || |||||||||||||| |||||| ||||||||||  | ||||||||
Sbjct: 72019 catggtggaagccgagcggcgtctcctggcgcacgcgctgctggaccaggccaacgcccg 72078

                                                                         
Query: 76    cttcatcctcctatcggagtcgcacgtcccgctcttcgacttccccaccgtctactccta 135
              ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 72079 gttcatcctcctgtcggagtcgcacgtcccgctcttcgacttccccacggtctactcgta 72138

                                                                         
Query: 136   catcatcaactccacca---aggtgtacatggagtcctacgacgagccgggtgggacggg 192
             | |||||||||||||||   || | ||| | ||||||||||||  ||| || | ||||||
Sbjct: 72139 cctcatcaactccaccaccaagatatacctcgagtcctacgacttgccaggcgtgacggg 72198

                                      
Query: 193   tcggggccggtacaagcgcggcatg 217
              || ||||||||||| ||| |||||
Sbjct: 72199 gcgcggccggtacaaacgcagcatg 72223



 Score =  135 bits (68), Expect = 2e-28
 Identities = 178/215 (82%), Gaps = 6/215 (2%)
 Strand = Plus / Plus

                                                                         
Query: 422   acgtgggttgactggtcccatggcgggccccatccgtcgaggttcacgaggatggaggtc 481
             |||||||| ||||||||||| || || || || ||| |||||||||||||||||||||||
Sbjct: 72428 acgtgggtcgactggtcccacgggggcccgcacccggcgaggttcacgaggatggaggtc 72487

                                                                         
Query: 482   acggtggacttcctacggtggctcagaggcggg------acgacgtgcgagtataatggg 535
             |||  ||||||||| |||||||| || | ||||      || |||||||| || ||||| 
Sbjct: 72488 acgccggacttcctccggtggcttagggccggggccgggactacgtgcgactacaatggc 72547

                                                                         
Query: 536   aggaccaccaccgtctgcttcctgttcgcgaggaagttcctgcctaactcactcacccgc 595
                ||||| || |||||||||||||||||||||||||||||||| ||||| |||||| | 
Sbjct: 72548 gccaccacgacggtctgcttcctgttcgcgaggaagttcctgcccaactcgctcaccagg 72607

                                                
Query: 596   ttcttgagattcgcgccgaaggtgatgggctttgg 630
             ||| | |||||||| || ||||| |||||||||||
Sbjct: 72608 ttcctcagattcgctccaaaggtcatgggctttgg 72642



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 239   cagtggcgtaagggctcacagtggttcga 267
             |||||||| |||||||| |||||||||||
Sbjct: 72245 cagtggcgcaagggctcgcagtggttcga 72273
to top
>dbj|AP005011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0622F08
          Length = 140628

 Score =  180 bits (91), Expect = 4e-42
 Identities = 177/205 (86%), Gaps = 3/205 (1%)
 Strand = Plus / Plus

                                                                         
Query: 16    catggtggaagctgaacggcgtctcctggctcacgcgttgctggaccactctaacgcccg 75
             |||||||||||| || |||||||||||||| |||||| ||||||||||  | ||||||||
Sbjct: 9916  catggtggaagccgagcggcgtctcctggcgcacgcgctgctggaccaggccaacgcccg 9975

                                                                         
Query: 76    cttcatcctcctatcggagtcgcacgtcccgctcttcgacttccccaccgtctactccta 135
              ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 9976  gttcatcctcctgtcggagtcgcacgtcccgctcttcgacttccccacggtctactcgta 10035

                                                                         
Query: 136   catcatcaactccacca---aggtgtacatggagtcctacgacgagccgggtgggacggg 192
             | |||||||||||||||   || | ||| | ||||||||||||  ||| || | ||||||
Sbjct: 10036 cctcatcaactccaccaccaagatatacctcgagtcctacgacttgccaggcgtgacggg 10095

                                      
Query: 193   tcggggccggtacaagcgcggcatg 217
              || ||||||||||| ||| |||||
Sbjct: 10096 gcgcggccggtacaaacgcagcatg 10120



 Score =  135 bits (68), Expect = 2e-28
 Identities = 178/215 (82%), Gaps = 6/215 (2%)
 Strand = Plus / Plus

                                                                         
Query: 422   acgtgggttgactggtcccatggcgggccccatccgtcgaggttcacgaggatggaggtc 481
             |||||||| ||||||||||| || || || || ||| |||||||||||||||||||||||
Sbjct: 10325 acgtgggtcgactggtcccacgggggcccgcacccggcgaggttcacgaggatggaggtc 10384

                                                                         
Query: 482   acggtggacttcctacggtggctcagaggcggg------acgacgtgcgagtataatggg 535
             |||  ||||||||| |||||||| || | ||||      || |||||||| || ||||| 
Sbjct: 10385 acgccggacttcctccggtggcttagggccggggccgggactacgtgcgactacaatggc 10444

                                                                         
Query: 536   aggaccaccaccgtctgcttcctgttcgcgaggaagttcctgcctaactcactcacccgc 595
                ||||| || |||||||||||||||||||||||||||||||| ||||| |||||| | 
Sbjct: 10445 gccaccacgacggtctgcttcctgttcgcgaggaagttcctgcccaactcgctcaccagg 10504

                                                
Query: 596   ttcttgagattcgcgccgaaggtgatgggctttgg 630
             ||| | |||||||| || ||||| |||||||||||
Sbjct: 10505 ttcctcagattcgctccaaaggtcatgggctttgg 10539



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 239   cagtggcgtaagggctcacagtggttcga 267
             |||||||| |||||||| |||||||||||
Sbjct: 10142 cagtggcgcaagggctcgcagtggttcga 10170
to top
>dbj|AK069802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026H02, full
            insert sequence
          Length = 1741

 Score =  180 bits (91), Expect = 4e-42
 Identities = 177/205 (86%), Gaps = 3/205 (1%)
 Strand = Plus / Plus

                                                                        
Query: 16   catggtggaagctgaacggcgtctcctggctcacgcgttgctggaccactctaacgcccg 75
            |||||||||||| || |||||||||||||| |||||| ||||||||||  | ||||||||
Sbjct: 883  catggtggaagccgagcggcgtctcctggcgcacgcgctgctggaccaggccaacgcccg 942

                                                                        
Query: 76   cttcatcctcctatcggagtcgcacgtcccgctcttcgacttccccaccgtctactccta 135
             ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 943  gttcatcctcctgtcggagtcgcacgtcccgctcttcgacttccccacggtctactcgta 1002

                                                                        
Query: 136  catcatcaactccacca---aggtgtacatggagtcctacgacgagccgggtgggacggg 192
            | |||||||||||||||   || | ||| | ||||||||||||  ||| || | ||||||
Sbjct: 1003 cctcatcaactccaccaccaagatatacctcgagtcctacgacttgccaggcgtgacggg 1062

                                     
Query: 193  tcggggccggtacaagcgcggcatg 217
             || ||||||||||| ||| |||||
Sbjct: 1063 gcgcggccggtacaaacgcagcatg 1087



 Score =  135 bits (68), Expect = 2e-28
 Identities = 178/215 (82%), Gaps = 6/215 (2%)
 Strand = Plus / Plus

                                                                        
Query: 422  acgtgggttgactggtcccatggcgggccccatccgtcgaggttcacgaggatggaggtc 481
            |||||||| ||||||||||| || || || || ||| |||||||||||||||||||||||
Sbjct: 1292 acgtgggtcgactggtcccacgggggcccgcacccggcgaggttcacgaggatggaggtc 1351

                                                                        
Query: 482  acggtggacttcctacggtggctcagaggcggg------acgacgtgcgagtataatggg 535
            |||  ||||||||| |||||||| || | ||||      || |||||||| || ||||| 
Sbjct: 1352 acgccggacttcctccggtggcttagggccggggccgggactacgtgcgactacaatggc 1411

                                                                        
Query: 536  aggaccaccaccgtctgcttcctgttcgcgaggaagttcctgcctaactcactcacccgc 595
               ||||| || |||||||||||||||||||||||||||||||| ||||| |||||| | 
Sbjct: 1412 gccaccacgacggtctgcttcctgttcgcgaggaagttcctgcccaactcgctcaccagg 1471

                                               
Query: 596  ttcttgagattcgcgccgaaggtgatgggctttgg 630
            ||| | |||||||| || ||||| |||||||||||
Sbjct: 1472 ttcctcagattcgctccaaaggtcatgggctttgg 1506



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 239  cagtggcgtaagggctcacagtggttcga 267
            |||||||| |||||||| |||||||||||
Sbjct: 1109 cagtggcgcaagggctcgcagtggttcga 1137
to top
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                        
Query: 341     cgcaactgctacaccgacgagcattacttgccgacattcct 381
               |||||||||||| |||||||||| ||| |||| ||||||||
Sbjct: 1706448 cgcaactgctacgccgacgagcactacctgcccacattcct 1706488



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 553     cttcctgttcgcgaggaagttcctgcctaactcactcacc 592
               |||| ||||||||||||||||||| || ||||| ||||||
Sbjct: 1706650 cttcatgttcgcgaggaagttcctacccaactcgctcacc 1706689



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 147     ccaccaaggtgtacatggagtcctacgac 175
               |||||||||||||| | ||||||||||||
Sbjct: 1706259 ccaccaaggtgtacctcgagtcctacgac 1706287
to top
>gb|AC025098.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0020E23,
              complete sequence
          Length = 151359

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 341    cgcaactgctacaccgacgagcattacttgccgacattcct 381
              |||||||||||| |||||||||| ||| |||| ||||||||
Sbjct: 103545 cgcaactgctacgccgacgagcactacctgcccacattcct 103585



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 553    cttcctgttcgcgaggaagttcctgcctaactcactcacc 592
              |||| ||||||||||||||||||| || ||||| ||||||
Sbjct: 103747 cttcatgttcgcgaggaagttcctacccaactcgctcacc 103786



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 147    ccaccaaggtgtacatggagtcctacgac 175
              |||||||||||||| | ||||||||||||
Sbjct: 103356 ccaccaaggtgtacctcgagtcctacgac 103384
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                        
Query: 341     cgcaactgctacaccgacgagcattacttgccgacattcct 381
               |||||||||||| |||||||||| ||| |||| ||||||||
Sbjct: 1706448 cgcaactgctacgccgacgagcactacctgcccacattcct 1706488



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 553     cttcctgttcgcgaggaagttcctgcctaactcactcacc 592
               |||| ||||||||||||||||||| || ||||| ||||||
Sbjct: 1706650 cttcatgttcgcgaggaagttcctacccaactcgctcacc 1706689



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 147     ccaccaaggtgtacatggagtcctacgac 175
               |||||||||||||| | ||||||||||||
Sbjct: 1706259 ccaccaaggtgtacctcgagtcctacgac 1706287
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                        
Query: 341     cgcaactgctacaccgacgagcattacttgccgacattcct 381
               |||||||||||| |||||||||| ||| |||| ||||||||
Sbjct: 1706399 cgcaactgctacgccgacgagcactacctgcccacattcct 1706439



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 553     cttcctgttcgcgaggaagttcctgcctaactcactcacc 592
               |||| ||||||||||||||||||| || ||||| ||||||
Sbjct: 1706601 cttcatgttcgcgaggaagttcctacccaactcgctcacc 1706640



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 147     ccaccaaggtgtacatggagtcctacgac 175
               |||||||||||||| | ||||||||||||
Sbjct: 1706210 ccaccaaggtgtacctcgagtcctacgac 1706238
to top
>ref|XM_463522.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1446

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 551  tgcttcctgttcgcgaggaagttc 574
            ||||||||||||||||||||||||
Sbjct: 1063 tgcttcctgttcgcgaggaagttc 1086
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 551      tgcttcctgttcgcgaggaagttc 574
                ||||||||||||||||||||||||
Sbjct: 38006254 tgcttcctgttcgcgaggaagttc 38006231



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 238     gcagtggcgtaagggctcacagtggttcga 267
               ||||||||| |||||||| |||||||||||
Sbjct: 1857059 gcagtggcgcaagggctcccagtggttcga 1857088



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 457      gtcgaggttcacgaggatggaggtcacg 484
                |||||||||| |||||||||||| ||||
Sbjct: 10025543 gtcgaggttctcgaggatggagggcacg 10025570
to top
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A10
          Length = 137348

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 551   tgcttcctgttcgcgaggaagttc 574
             ||||||||||||||||||||||||
Sbjct: 87198 tgcttcctgttcgcgaggaagttc 87175
to top
>dbj|AK105949.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C09, full
            insert sequence
          Length = 1397

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 551  tgcttcctgttcgcgaggaagttc 574
            ||||||||||||||||||||||||
Sbjct: 1201 tgcttcctgttcgcgaggaagttc 1224
to top
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0648C09
          Length = 107522

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 551    tgcttcctgttcgcgaggaagttc 574
              ||||||||||||||||||||||||
Sbjct: 102530 tgcttcctgttcgcgaggaagttc 102507
to top
>ref|XM_550035.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1236

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 238 gcagtggcgtaagggctcacagtggttcga 267
           ||||||||| |||||||| |||||||||||
Sbjct: 843 gcagtggcgcaagggctcccagtggttcga 872
to top
>ref|NM_001030564.1| Gallus gallus Vac14 homolog (S. cerevisiae) (VAC14), mRNA
          Length = 2886

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 474  tggaggtcacggtggacttcct 495
            ||||||||||||||||||||||
Sbjct: 2004 tggaggtcacggtggacttcct 2025
to top
>emb|AJ720669.1| Gallus gallus mRNA for hypothetical protein, clone 23c3
          Length = 2886

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 474  tggaggtcacggtggacttcct 495
            ||||||||||||||||||||||
Sbjct: 2004 tggaggtcacggtggacttcct 2025
to top
>emb|BX933531.2| Gallus gallus finished cDNA, clone ChEST47n11
          Length = 893

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 474 tggaggtcacggtggacttcct 495
           ||||||||||||||||||||||
Sbjct: 27  tggaggtcacggtggacttcct 48
to top
>dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0083M16
          Length = 179428

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 238   gcagtggcgtaagggctcacagtggttcga 267
             ||||||||| |||||||| |||||||||||
Sbjct: 98441 gcagtggcgcaagggctcccagtggttcga 98470
to top
>gb|AY297289.1| Salticus scenicus 28S ribosomal RNA gene, partial sequence
          Length = 748

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 175 cgagccgggtgggacgggtcg 195
           |||||||||||||||||||||
Sbjct: 612 cgagccgggtgggacgggtcg 592
to top
>gb|AY297285.1| Cf. Neaetha sp. MCH-2003 28S ribosomal RNA gene, partial sequence
          Length = 751

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 175 cgagccgggtgggacgggtcg 195
           |||||||||||||||||||||
Sbjct: 615 cgagccgggtgggacgggtcg 595
to top
>ref|XM_743909.1| Aspergillus fumigatus Af293 C6 transcription factor (Afu7g05080)
           partial mRNA
          Length = 1995

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 511 cgggacgacgtgcgagtataatggg 535
           ||||||||||||||||||| |||||
Sbjct: 111 cgggacgacgtgcgagtatgatggg 135
to top
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 271   ggatcgtgcgcttgccgttga 291
             |||||||||||||||||||||
Sbjct: 90137 ggatcgtgcgcttgccgttga 90117
to top
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 287     gttgatgttgttgccgatgatgta 310
               ||||||||||||| ||||||||||
Sbjct: 2027566 gttgatgttgttggcgatgatgta 2027543
to top
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 457 gtcgaggttcacgaggatggaggtcacg 484
           |||||||||| |||||||||||| ||||
Sbjct: 681 gtcgaggttctcgaggatggagggcacg 654
to top
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 389     cggcaccctgaggcagccgc 408
               ||||||||||||||||||||
Sbjct: 2477517 cggcaccctgaggcagccgc 2477536
to top
>gb|DQ306875.1| Bradyrhizobium sp. UPM1029 hydrogenase gene cluster, complete
           sequence
          Length = 18000

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 318 cggtcttcagaaagttctgc 337
           ||||||||||||||||||||
Sbjct: 698 cggtcttcagaaagttctgc 679
to top
>emb|CR381676.9| Zebrafish DNA sequence from clone CH211-11J2 in linkage group 7, complete
              sequence
          Length = 200769

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 212    ggcatggcacccaccatcacccct 235
              ||||||||||||| ||||||||||
Sbjct: 126680 ggcatggcacccaacatcacccct 126703
to top
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 263    ttcgacctggatcgtgcgcttgcc 286
              ||||| ||||||||||||||||||
Sbjct: 693803 ttcgaactggatcgtgcgcttgcc 693780
to top
>emb|AL157878.11| Human DNA sequence from clone RP11-51B13 on chromosome 13q31.1-32.1
              Contains 2 novel genes, complete sequence
          Length = 118873

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 572    ttcctgcctaactcactcac 591
              ||||||||||||||||||||
Sbjct: 104734 ttcctgcctaactcactcac 104715
to top
>gb|AC020980.6| Homo sapiens chromosome 5 clone RPCI-1_167G20, complete sequence
          Length = 175177

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 618    tgatgggctttggctgaagg 637
              ||||||||||||||||||||
Sbjct: 113692 tgatgggctttggctgaagg 113673
to top
>gb|AC158242.4| Pan troglodytes BAC clone CH251-354C10 from chromosome unknown, complete
              sequence
          Length = 182200

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 618    tgatgggctttggctgaagg 637
              ||||||||||||||||||||
Sbjct: 166874 tgatgggctttggctgaagg 166893
to top
>gb|AC156945.2| Pan troglodytes BAC clone CH251-464H12 from chromosome unknown, complete
              sequence
          Length = 184973

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 618    tgatgggctttggctgaagg 637
              ||||||||||||||||||||
Sbjct: 182858 tgatgggctttggctgaagg 182839
to top
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 457    gtcgaggttcacgaggatggaggtcacg 484
              |||||||||| |||||||||||| ||||
Sbjct: 105825 gtcgaggttctcgaggatggagggcacg 105852
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 287     gttgatgttgttgccgatga 306
               ||||||||||||||||||||
Sbjct: 1756037 gttgatgttgttgccgatga 1756018
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 287     gttgatgttgttgccgatga 306
               ||||||||||||||||||||
Sbjct: 2259997 gttgatgttgttgccgatga 2259978
to top
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 457    gtcgaggttcacgaggatggaggtcacg 484
              |||||||||| |||||||||||| ||||
Sbjct: 120036 gtcgaggttctcgaggatggagggcacg 120063


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,802,258
Number of Sequences: 3902068
Number of extensions: 3802258
Number of successful extensions: 62311
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61930
Number of HSP's gapped (non-prelim): 381
length of query: 650
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 627
effective length of database: 17,143,297,704
effective search space: 10748847660408
effective search space used: 10748847660408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top