No.
Definition
Score (bits)
E Value
1 gb|AY137514.1| Hordeum vulgare subsp. vulgare hypersensitive-ind...
1172
0.0
2 dbj|AK102678.1| Oryza sativa (japonica cultivar-group) cDNA clon...
642
0.0
3 dbj|AK060303.1| Oryza sativa (japonica cultivar-group) cDNA clon...
642
0.0
4 gb|AY109189.1| Zea mays PCO107108 mRNA sequence
551
e-154
5 gb|AY137515.1| Hordeum vulgare subsp. vulgare hypersensitive-ind...
498
e-137
6 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
270
5e-69
7 dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D...
270
5e-69
8 dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic D...
270
5e-69
9 ref|NM_124536.2| Arabidopsis thaliana unknown protein AT5G51570 ...
133
7e-28
10 gb|BT006203.1| Arabidopsis thaliana At5g51570 mRNA, complete cds
133
7e-28
11 dbj|AK067979.1| Oryza sativa (japonica cultivar-group) cDNA clon...
111
3e-21
12 dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...
68
4e-08
13 ref|NM_192555.1| Oryza sativa (japonica cultivar-group), predic...
56
1e-04
14 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
56
1e-04
15 dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic D...
56
1e-04
16 dbj|AK107346.1| Oryza sativa (japonica cultivar-group) cDNA clon...
56
1e-04
17 emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp...
46
0.13
18 gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl...
44
0.52
19 ref|XM_472622.1| Oryza sativa (japonica cultivar-group), predic...
42
2.1
20 gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr...
42
2.1
21 gb|AC136471.1| Solanum demissum chromosome 11 BAC PGEC561 genomi...
42
2.1
22 gb|AC004988.2| Homo sapiens PAC clone RP5-1178G13 from 7, comple...
42
2.1
23 gb|AY137516.1| Hordeum vulgare subsp. vulgare hypersensitive-ind...
42
2.1
24 gb|AY137511.1| Hordeum vulgare subsp. vulgare hypersensitive-ind...
42
2.1
25 ref|XM_569823.1| Cryptococcus neoformans var. neoformans JEC21 h...
42
2.1
26 emb|AL161779.32| Human DNA sequence from clone RP6-29D12 on chro...
42
2.1
27 emb|BX548156.1|OSJN00292 Oryza sativa genomic DNA, chromosome 4,...
42
2.1
28 gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno...
42
2.1
29 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
42
2.1
30 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...
42
2.1
31 emb|AL662973.3|OSJN00175 Oryza sativa genomic DNA, chromosome 4,...
42
2.1
32 dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic D...
42
2.1
33 gb|AE005003.1| Halobacterium sp. NRC-1 section 34 of 170 of the ...
42
2.1
34 dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic D...
42
2.1
35 dbj|AK064785.1| Oryza sativa (japonica cultivar-group) cDNA clon...
42
2.1
36 emb|AL512311.3|CNS07EF2 Human chromosome 14 DNA sequence BAC R-3...
42
2.1
37 ref|NM_196331.1| Oryza sativa (japonica cultivar-group) putative...
40
8.2
38 ref|XM_472295.1| Oryza sativa (japonica cultivar-group), predic...
40
8.2
39 gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
40
8.2
40 gb|DQ019356.1| Mycosphaerella musicola strain 90 18S ribosomal R...
40
8.2
41 emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ...
40
8.2
42 gb|AC073341.10| Homo sapiens BAC clone RP11-549I23 from 7, compl...
40
8.2
43 gb|AF236374.1| Zea mays variety B73 hypersensitive-induced respo...
40
8.2
44 emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ...
40
8.2
45 emb|BX640426.1| Bordetella parapertussis strain 12822, complete ...
40
8.2
46 emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g...
40
8.2
47 emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4,...
40
8.2
48 emb|AL645802.11| Mouse DNA sequence from clone RP23-128D9 on chr...
40
8.2
49 dbj|AB190916.1| Oryza sativa (japonica cultivar-group) osysl6 mR...
40
8.2
50 gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
40
8.2
51 gb|AC122144.1| Oryza sativa (japonica cultivar-group) chromosome...
40
8.2
52 gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 geno...
40
8.2
53 ref|XM_692044.1| PREDICTED: Danio rerio similar to KIAA1201 prot...
40
8.2
54 gb|AF372655.1|AF372655 Rhizobium leguminosarum bv. trifolii CpsF...
40
8.2
55 gb|AY646507.1| Mycosphaerella musicola isolate COL 258 18S ribos...
40
8.2
56 gb|AY646506.1| Mycosphaerella musicola isolate COL 257 18S ribos...
40
8.2
57 gb|AY646505.1| Mycosphaerella musicola isolate STL 001 18S ribos...
40
8.2
58 gb|AY646504.1| Mycosphaerella musicola isolate MTQ 115 18S ribos...
40
8.2
59 gb|AY646503.1| Mycosphaerella musicola isolate MTQ 112 18S ribos...
40
8.2
60 gb|AY646502.1| Mycosphaerella musicola isolate MTQ 110 18S ribos...
40
8.2
61 gb|AY646501.1| Mycosphaerella musicola isolate MTQ 107 18S ribos...
40
8.2
62 gb|AY646500.1| Mycosphaerella musicola isolate GLP 328 18S ribos...
40
8.2
63 gb|AY646499.1| Mycosphaerella musicola isolate GLP 325 18S ribos...
40
8.2
64 gb|AY646498.1| Mycosphaerella musicola isolate GNI 494 18S ribos...
40
8.2
65 gb|AY646497.1| Mycosphaerella musicola isolate GNI 492 18S ribos...
40
8.2
66 gb|AY646496.1| Mycosphaerella musicola isolate GIN 490 18S ribos...
40
8.2
67 gb|AY646495.1| Mycosphaerella musicola isolate CMR 100 18S ribos...
40
8.2
68 gb|AY646494.1| Mycosphaerella musicola isolate CMR 061 18S ribos...
40
8.2
69 gb|AY646493.1| Mycosphaerella musicola isolate BRA 015 18S ribos...
40
8.2
70 gb|AY646492.1| Mycosphaerella musicola isolate BRA 014 18S ribos...
40
8.2
71 gb|AY646491.1| Mycosphaerella musicola isolate BRA 013 18S ribos...
40
8.2
72 gb|AY646490.1| Mycosphaerella musicola isolate UQ 2268 18S ribos...
40
8.2
73 gb|AY646489.1| Mycosphaerella musicola isolate UQ 2265 18S ribos...
40
8.2
74 gb|AY646488.1| Mycosphaerella musicola isolate UQ 2261 18S ribos...
40
8.2
75 gb|AY646487.1| Mycosphaerella musicola isolate UQ 1987 18S ribos...
40
8.2
76 gb|AY646486.1| Mycosphaerella musicola isolate UQ 1669 18S ribos...
40
8.2
77 gb|AY646485.1| Mycosphaerella musicola isolate BF 388 18S riboso...
40
8.2
78 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.2
79 dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g...
40
8.2
80 dbj|AK100148.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
8.2
81 dbj|AK099908.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
8.2
82 dbj|AK066575.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
8.2
83 dbj|AK064828.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
8.2
84 gb|AY105181.1| Zea mays PCO066045 mRNA sequence
40
8.2
85 dbj|AB107665.1| Thermus thermophilus LIGT gene for 2'-5' RNA lig...
40
8.2
86 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
40
8.2
87 emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, ...
40
8.2
88 gb|AE017221.1| Thermus thermophilus HB27, complete genome
40
8.2
89 gb|AC132258.3| Mus musculus BAC clone RP24-361F13 from 1, comple...
40
8.2
90 gb|U72314.1|RPLCAT02 Rhizomys pruinosus lecithin:cholesterol acy...
40
8.2
>gb|AY137515.1 | Hordeum vulgare subsp. vulgare hypersensitive-induced reaction
protein 4 (hir4) gene, complete cds
Length = 4830
Score = 498 bits (251), Expect = e-137
Identities = 258/259 (99%), Gaps = 1/259 (0%)
Strand = Plus / Plus
Query: 2 cgtccatcc-tcgaccggaccggcgggccgatccatccagccgtccgacgggagcaggcg 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1566 cgtccatccatcgaccggaccggcgggccgatccatccagccgtccgacgggagcaggcg 1625
Query: 61 gggatggtgagcgccttcttcctcttctgcgggtgcgtggagcaggccaacgtggcggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1626 gggatggtgagcgccttcttcctcttctgcgggtgcgtggagcaggccaacgtggcggtg 1685
Query: 121 gtcgagaagtggggccgcttcctccgcctcgccgagccgggcctccacttcttcaacccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1686 gtcgagaagtggggccgcttcctccgcctcgccgagccgggcctccacttcttcaacccc 1745
Query: 181 tgcgccggcgagctcgtcgccggcaccctctccacccgcgtccagtcgctcgacgtcagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1746 tgcgccggcgagctcgtcgccggcaccctctccacccgcgtccagtcgctcgacgtcagg 1805
Query: 241 gtcgagaccaagaccaagg 259
|||||||||||||||||||
Sbjct: 1806 gtcgagaccaagaccaagg 1824
Score = 244 bits (123), Expect = 3e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 257 aggacaacgtgtttgttcagctgatctgtacaattcaataccgggttgttaaggagaatg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2713 aggacaacgtgtttgttcagctgatctgtacaattcaataccgggttgttaaggagaatg 2772
Query: 317 cagatgatgcattctacgagttgcagaatccccaacagcaaattcagtcctacgtctttg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2773 cagatgatgcattctacgagttgcagaatccccaacagcaaattcagtcctacgtctttg 2832
Query: 377 atg 379
|||
Sbjct: 2833 atg 2835
Score = 196 bits (99), Expect = 6e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 470 aggtgatgtcagattatggttacagcattgagcacattctcatggttgacatcatccctg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3631 aggtgatgtcagattatggttacagcattgagcacattctcatggttgacatcatccctg 3690
Query: 530 acgctgctgtccgcagagcaatgaacgacataaatgcag 568
|||||||||||||||||||||||||||||||||||||||
Sbjct: 3691 acgctgctgtccgcagagcaatgaacgacataaatgcag 3729
Score = 188 bits (95), Expect = 1e-44
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 379 gtggttcgagccatagttccaagaatggagctggacagtctttttgagcaaaagaatgag 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2919 gtggttcgagccatagttccaagaatggagctggacagtctttttgagcaaaagaatgag 2978
Query: 439 gtcgcaaaggctgtacttgaggagcttgaaaaggt 473
|||||||||||||||||||||||||||||||||||
Sbjct: 2979 gtcgcaaaggctgtacttgaggagcttgaaaaggt 3013
Score = 67.9 bits (34), Expect = 4e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 566 cagcccaacggctccagctcgcgagtgtctacaa 599
||||||||||||||||||||||||||||||||||
Sbjct: 3985 cagcccaacggctccagctcgcgagtgtctacaa 4018
>dbj|AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 270 bits (136), Expect = 5e-69
Identities = 181/196 (92%)
Strand = Plus / Minus
Query: 64 atggtgagcgccttcttcctcttctgcgggtgcgtggagcaggccaacgtggcggtggtc 123
|||||||||||||||||||| | |||||||||||||| ||||| | ||| ||||||||
Sbjct: 1911866 atggtgagcgccttcttcctgctgtgcgggtgcgtggaccaggcgagcgtcgcggtggtg 1911807
Query: 124 gagaagtggggccgcttcctccgcctcgccgagccgggcctccacttcttcaacccctgc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1911806 gagaagtggggccgcttcctccgcctcgccgagccgggcctccacttcttcaacccgttc 1911747
Query: 184 gccggcgagctcgtcgccggcaccctctccacccgcgtccagtcgctcgacgtcagggtc 243
||||||||| |||||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct: 1911746 gccggcgagttcgtcgccgggacgctctccacccgcgtccagtcgctcgacgtccgcgtc 1911687
Query: 244 gagaccaagaccaagg 259
||||||||||||||||
Sbjct: 1911686 gagaccaagaccaagg 1911671
Score = 151 bits (76), Expect = 3e-33
Identities = 103/112 (91%)
Strand = Plus / Minus
Query: 268 tttgttcagctgatctgtacaattcaataccgggttgttaaggagaatgcagatgatgca 327
||||||||||| ||||| ||||| ||||| |||||||||||||| |||| |||||||||
Sbjct: 1910984 tttgttcagcttatctgcacaatccaatatcgggttgttaaggaacatgctgatgatgca 1910925
Query: 328 ttctacgagttgcagaatccccaacagcaaattcagtcctacgtctttgatg 379
||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1910924 ttctatgagttgcagaatccccaacagcaaattcaggcctacgtctttgatg 1910873
Score = 149 bits (75), Expect = 1e-32
Identities = 93/99 (93%)
Strand = Plus / Minus
Query: 470 aggtgatgtcagattatggttacagcattgagcacattctcatggttgacatcatccctg 529
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1909926 aggtgatgggagattatggttacagcattgagcacattctcatggttgacatcatccctg 1909867
Query: 530 acgctgctgtccgcagagcaatgaacgacataaatgcag 568
| |||||||| |||||||||||||| || ||||||||||
Sbjct: 1909866 atgctgctgtacgcagagcaatgaatgaaataaatgcag 1909828
Score = 111 bits (56), Expect = 3e-21
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 268 tttgttcagctgatctgtacaattcaataccgggttgttaaggagaatgcagatgatgca 327
||||||||||||||||| |||| |||||||| || || ||||| |||| |||||||||
Sbjct: 1887409 tttgttcagctgatctgcgcaatccaataccgagtcgtgaaggaacatgctgatgatgca 1887468
Query: 328 ttctacgagttgcagaatccccaacagcaaattcagtcctacgtctttgatg 379
||||| || ||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 1887469 ttctatgaattgcagaatccccaacagcaaattcaggcctatgcctttgatg 1887520
Score = 79.8 bits (40), Expect = 9e-12
Identities = 143/176 (81%), Gaps = 6/176 (3%)
Strand = Plus / Plus
Query: 88 tgcgggtgcgtggagcaggccaacgtggcggtggtcgagaagtggggccgcttcctccgc 147
|||||||||||||| ||||| | ||| | || ||| ||||||| |||| ||||| | |||
Sbjct: 1884332 tgcgggtgcgtggatcaggcgagcgtcgaggcggtggagaagtagggc-gcttcgtacgc 1884390
Query: 148 ctcgccgagccgggcctccacttcttcaacccctgcgccggcgagctcgtcgccggcacc 207
||||| |||||||| |||||| || ||||||| | ||||||||| |||||| ||| |
Sbjct: 1884391 ctcgcggagccgggtctccacctcgtcaaccctttggccggcgagtgcgtcgctggcgct 1884450
Query: 208 ctctccacccgcgtccagtcg-----ctcgacgtcagggtcgagaccaagaccaag 258
||||| ||||||||||| || ||||||||| | ||||||||||||||||||
Sbjct: 1884451 ctctctacccgcgtccaatccaatccctcgacgtccgtgtcgagaccaagaccaag 1884506
Score = 71.9 bits (36), Expect = 2e-09
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 505 attctcatggttgacatcatccctgacgctgctgtccgcagagcaatgaacgacataaat 564
||||| |||||||| ||||||||||| || |||| |||||||||||||| |||||||||
Sbjct: 1888542 attcttatggttgatatcatccctgatacttctgtacgcagagcaatgaatgacataaat 1888601
Query: 565 gcag 568
||||
Sbjct: 1888602 gcag 1888605
Score = 69.9 bits (35), Expect = 9e-09
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 379 gtggttcgagccatagttccaagaatggagctggacagtctttttgagcaaaagaatgag 438
||||| ||||| |||||||| |||||| | || || |||||||||||||||||||||
Sbjct: 1910787 gtggtccgagctatagttccgagaatgaatcttgatgatctttttgagcaaaagaatgat 1910728
Query: 439 gtcgcaaaggctgtacttgaggagcttgaaaaggt 473
|| || || ||||||||| ||||||| ||||||||
Sbjct: 1910727 gtggcgaaagctgtacttcaggagctagaaaaggt 1910693
Score = 63.9 bits (32), Expect = 6e-07
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 418 ctttttgagcaaaagaatgaggtcgcaaaggctgtacttgaggagcttgaaaaggt 473
||||||||| |||||||||| || | ||| |||||||||||||||||||||||||
Sbjct: 1887643 ctttttgagtaaaagaatgatgtggtgaagactgtacttgaggagcttgaaaaggt 1887698
>dbj|AP003526.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0548D03
Length = 156709
Score = 270 bits (136), Expect = 5e-69
Identities = 181/196 (92%)
Strand = Plus / Minus
Query: 64 atggtgagcgccttcttcctcttctgcgggtgcgtggagcaggccaacgtggcggtggtc 123
|||||||||||||||||||| | |||||||||||||| ||||| | ||| ||||||||
Sbjct: 40646 atggtgagcgccttcttcctgctgtgcgggtgcgtggaccaggcgagcgtcgcggtggtg 40587
Query: 124 gagaagtggggccgcttcctccgcctcgccgagccgggcctccacttcttcaacccctgc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 40586 gagaagtggggccgcttcctccgcctcgccgagccgggcctccacttcttcaacccgttc 40527
Query: 184 gccggcgagctcgtcgccggcaccctctccacccgcgtccagtcgctcgacgtcagggtc 243
||||||||| |||||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct: 40526 gccggcgagttcgtcgccgggacgctctccacccgcgtccagtcgctcgacgtccgcgtc 40467
Query: 244 gagaccaagaccaagg 259
||||||||||||||||
Sbjct: 40466 gagaccaagaccaagg 40451
Score = 151 bits (76), Expect = 3e-33
Identities = 103/112 (91%)
Strand = Plus / Minus
Query: 268 tttgttcagctgatctgtacaattcaataccgggttgttaaggagaatgcagatgatgca 327
||||||||||| ||||| ||||| ||||| |||||||||||||| |||| |||||||||
Sbjct: 39764 tttgttcagcttatctgcacaatccaatatcgggttgttaaggaacatgctgatgatgca 39705
Query: 328 ttctacgagttgcagaatccccaacagcaaattcagtcctacgtctttgatg 379
||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 39704 ttctatgagttgcagaatccccaacagcaaattcaggcctacgtctttgatg 39653
Score = 149 bits (75), Expect = 1e-32
Identities = 93/99 (93%)
Strand = Plus / Minus
Query: 470 aggtgatgtcagattatggttacagcattgagcacattctcatggttgacatcatccctg 529
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38706 aggtgatgggagattatggttacagcattgagcacattctcatggttgacatcatccctg 38647
Query: 530 acgctgctgtccgcagagcaatgaacgacataaatgcag 568
| |||||||| |||||||||||||| || ||||||||||
Sbjct: 38646 atgctgctgtacgcagagcaatgaatgaaataaatgcag 38608
Score = 111 bits (56), Expect = 3e-21
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 268 tttgttcagctgatctgtacaattcaataccgggttgttaaggagaatgcagatgatgca 327
||||||||||||||||| |||| |||||||| || || ||||| |||| |||||||||
Sbjct: 16189 tttgttcagctgatctgcgcaatccaataccgagtcgtgaaggaacatgctgatgatgca 16248
Query: 328 ttctacgagttgcagaatccccaacagcaaattcagtcctacgtctttgatg 379
||||| || ||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 16249 ttctatgaattgcagaatccccaacagcaaattcaggcctatgcctttgatg 16300
Score = 79.8 bits (40), Expect = 9e-12
Identities = 143/176 (81%), Gaps = 6/176 (3%)
Strand = Plus / Plus
Query: 88 tgcgggtgcgtggagcaggccaacgtggcggtggtcgagaagtggggccgcttcctccgc 147
|||||||||||||| ||||| | ||| | || ||| ||||||| |||| ||||| | |||
Sbjct: 13112 tgcgggtgcgtggatcaggcgagcgtcgaggcggtggagaagtagggc-gcttcgtacgc 13170
Query: 148 ctcgccgagccgggcctccacttcttcaacccctgcgccggcgagctcgtcgccggcacc 207
||||| |||||||| |||||| || ||||||| | ||||||||| |||||| ||| |
Sbjct: 13171 ctcgcggagccgggtctccacctcgtcaaccctttggccggcgagtgcgtcgctggcgct 13230
Query: 208 ctctccacccgcgtccagtcg-----ctcgacgtcagggtcgagaccaagaccaag 258
||||| ||||||||||| || ||||||||| | ||||||||||||||||||
Sbjct: 13231 ctctctacccgcgtccaatccaatccctcgacgtccgtgtcgagaccaagaccaag 13286
Score = 71.9 bits (36), Expect = 2e-09
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 505 attctcatggttgacatcatccctgacgctgctgtccgcagagcaatgaacgacataaat 564
||||| |||||||| ||||||||||| || |||| |||||||||||||| |||||||||
Sbjct: 17322 attcttatggttgatatcatccctgatacttctgtacgcagagcaatgaatgacataaat 17381
Query: 565 gcag 568
||||
Sbjct: 17382 gcag 17385
Score = 69.9 bits (35), Expect = 9e-09
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 379 gtggttcgagccatagttccaagaatggagctggacagtctttttgagcaaaagaatgag 438
||||| ||||| |||||||| |||||| | || || |||||||||||||||||||||
Sbjct: 39567 gtggtccgagctatagttccgagaatgaatcttgatgatctttttgagcaaaagaatgat 39508
Query: 439 gtcgcaaaggctgtacttgaggagcttgaaaaggt 473
|| || || ||||||||| ||||||| ||||||||
Sbjct: 39507 gtggcgaaagctgtacttcaggagctagaaaaggt 39473
Score = 63.9 bits (32), Expect = 6e-07
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 418 ctttttgagcaaaagaatgaggtcgcaaaggctgtacttgaggagcttgaaaaggt 473
||||||||| |||||||||| || | ||| |||||||||||||||||||||||||
Sbjct: 16423 ctttttgagtaaaagaatgatgtggtgaagactgtacttgaggagcttgaaaaggt 16478
>dbj|AP004234.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0001H02
Length = 147160
Score = 270 bits (136), Expect = 5e-69
Identities = 181/196 (92%)
Strand = Plus / Minus
Query: 64 atggtgagcgccttcttcctcttctgcgggtgcgtggagcaggccaacgtggcggtggtc 123
|||||||||||||||||||| | |||||||||||||| ||||| | ||| ||||||||
Sbjct: 112344 atggtgagcgccttcttcctgctgtgcgggtgcgtggaccaggcgagcgtcgcggtggtg 112285
Query: 124 gagaagtggggccgcttcctccgcctcgccgagccgggcctccacttcttcaacccctgc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 112284 gagaagtggggccgcttcctccgcctcgccgagccgggcctccacttcttcaacccgttc 112225
Query: 184 gccggcgagctcgtcgccggcaccctctccacccgcgtccagtcgctcgacgtcagggtc 243
||||||||| |||||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct: 112224 gccggcgagttcgtcgccgggacgctctccacccgcgtccagtcgctcgacgtccgcgtc 112165
Query: 244 gagaccaagaccaagg 259
||||||||||||||||
Sbjct: 112164 gagaccaagaccaagg 112149
Score = 151 bits (76), Expect = 3e-33
Identities = 103/112 (91%)
Strand = Plus / Minus
Query: 268 tttgttcagctgatctgtacaattcaataccgggttgttaaggagaatgcagatgatgca 327
||||||||||| ||||| ||||| ||||| |||||||||||||| |||| |||||||||
Sbjct: 111462 tttgttcagcttatctgcacaatccaatatcgggttgttaaggaacatgctgatgatgca 111403
Query: 328 ttctacgagttgcagaatccccaacagcaaattcagtcctacgtctttgatg 379
||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 111402 ttctatgagttgcagaatccccaacagcaaattcaggcctacgtctttgatg 111351
Score = 149 bits (75), Expect = 1e-32
Identities = 93/99 (93%)
Strand = Plus / Minus
Query: 470 aggtgatgtcagattatggttacagcattgagcacattctcatggttgacatcatccctg 529
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110404 aggtgatgggagattatggttacagcattgagcacattctcatggttgacatcatccctg 110345
Query: 530 acgctgctgtccgcagagcaatgaacgacataaatgcag 568
| |||||||| |||||||||||||| || ||||||||||
Sbjct: 110344 atgctgctgtacgcagagcaatgaatgaaataaatgcag 110306
Score = 111 bits (56), Expect = 3e-21
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 268 tttgttcagctgatctgtacaattcaataccgggttgttaaggagaatgcagatgatgca 327
||||||||||||||||| |||| |||||||| || || ||||| |||| |||||||||
Sbjct: 87887 tttgttcagctgatctgcgcaatccaataccgagtcgtgaaggaacatgctgatgatgca 87946
Query: 328 ttctacgagttgcagaatccccaacagcaaattcagtcctacgtctttgatg 379
||||| || ||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 87947 ttctatgaattgcagaatccccaacagcaaattcaggcctatgcctttgatg 87998
Score = 79.8 bits (40), Expect = 9e-12
Identities = 143/176 (81%), Gaps = 6/176 (3%)
Strand = Plus / Plus
Query: 88 tgcgggtgcgtggagcaggccaacgtggcggtggtcgagaagtggggccgcttcctccgc 147
|||||||||||||| ||||| | ||| | || ||| ||||||| |||| ||||| | |||
Sbjct: 84810 tgcgggtgcgtggatcaggcgagcgtcgaggcggtggagaagtagggc-gcttcgtacgc 84868
Query: 148 ctcgccgagccgggcctccacttcttcaacccctgcgccggcgagctcgtcgccggcacc 207
||||| |||||||| |||||| || ||||||| | ||||||||| |||||| ||| |
Sbjct: 84869 ctcgcggagccgggtctccacctcgtcaaccctttggccggcgagtgcgtcgctggcgct 84928
Query: 208 ctctccacccgcgtccagtcg-----ctcgacgtcagggtcgagaccaagaccaag 258
||||| ||||||||||| || ||||||||| | ||||||||||||||||||
Sbjct: 84929 ctctctacccgcgtccaatccaatccctcgacgtccgtgtcgagaccaagaccaag 84984
Score = 71.9 bits (36), Expect = 2e-09
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 505 attctcatggttgacatcatccctgacgctgctgtccgcagagcaatgaacgacataaat 564
||||| |||||||| ||||||||||| || |||| |||||||||||||| |||||||||
Sbjct: 89020 attcttatggttgatatcatccctgatacttctgtacgcagagcaatgaatgacataaat 89079
Query: 565 gcag 568
||||
Sbjct: 89080 gcag 89083
Score = 69.9 bits (35), Expect = 9e-09
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 379 gtggttcgagccatagttccaagaatggagctggacagtctttttgagcaaaagaatgag 438
||||| ||||| |||||||| |||||| | || || |||||||||||||||||||||
Sbjct: 111265 gtggtccgagctatagttccgagaatgaatcttgatgatctttttgagcaaaagaatgat 111206
Query: 439 gtcgcaaaggctgtacttgaggagcttgaaaaggt 473
|| || || ||||||||| ||||||| ||||||||
Sbjct: 111205 gtggcgaaagctgtacttcaggagctagaaaaggt 111171
Score = 63.9 bits (32), Expect = 6e-07
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 418 ctttttgagcaaaagaatgaggtcgcaaaggctgtacttgaggagcttgaaaaggt 473
||||||||| |||||||||| || | ||| |||||||||||||||||||||||||
Sbjct: 88121 ctttttgagtaaaagaatgatgtggtgaagactgtacttgaggagcttgaaaaggt 88176
>emb|AL161779.32 | Human DNA sequence from clone RP6-29D12 on chromosome Xp11.1-11.23
Contains the 3' end of the SMC1L1 gene for SMC1 structural
maintenance of chromosomes 1-like 1 (yeast), a novel
pseudogene, a ribosomal protein S13 (RPS13) pseudogene, a
laminin receptor 1 (ribosomal protein SA 67kDa) (LAMR1)
pseudogene, the 5' end of a novel gene KIAA0522 and a CpG
island, complete sequence
Length = 102528
Score = 42.1 bits (21), Expect = 2.1
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 161 gcctccacttcttcaacccct 181
|||||||||||||||||||||
Sbjct: 21022 gcctccacttcttcaacccct 21002
>emb|AL645802.11 | Mouse DNA sequence from clone RP23-128D9 on chromosome 11 Contains the
gene for olfactory receptor MOR275-2, an olfactory
receptor (MOR275-3) pseudogene, the gene for olfactory
receptor MOR275-5, a novel gene (2210407C18Rik), the gene
olfactory receptor MOR107-1, a novel gene (LOC216781), a
novel olfactory receptor protein, a novel gene similar to
olfactory receptor MOR285-1 (LOC216783), a novel gene
similar to olfactory receptor MOR285-2 (LOC216784), a novel
gene similar to olfactory receptor MOR285-1 (LOC194664),
the gene for olfactory receptor MOR256-47 and a novel gene
similar to olfactory receptor MOR285-1 (LOC193147),
complete sequence
Length = 226520
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 301 gttgttaaggagaatgcaga 320
||||||||||||||||||||
Sbjct: 115852 gttgttaaggagaatgcaga 115871
>gb|AF372655.1 |AF372655 Rhizobium leguminosarum bv. trifolii CpsF (cpsF) gene, partial cds; and
putative succinoglycan biosynthesis transport protein,
FolD (folD), AglR (aglR), FadB (fadB), XynA (xynA), HndI
(hndI), HndJ (hndJ), putative short-chain dehydrogenase,
and LysR-type transcriptional regulator genes, complete
cds
Length = 11431
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 191 agctcgtcgccggcaccctc 210
||||||||||||||||||||
Sbjct: 11054 agctcgtcgccggcaccctc 11035
>gb|AY646507.1 | Mycosphaerella musicola isolate COL 258 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646506.1 | Mycosphaerella musicola isolate COL 257 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646505.1 | Mycosphaerella musicola isolate STL 001 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646504.1 | Mycosphaerella musicola isolate MTQ 115 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646503.1 | Mycosphaerella musicola isolate MTQ 112 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646502.1 | Mycosphaerella musicola isolate MTQ 110 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646501.1 | Mycosphaerella musicola isolate MTQ 107 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646500.1 | Mycosphaerella musicola isolate GLP 328 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646499.1 | Mycosphaerella musicola isolate GLP 325 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646498.1 | Mycosphaerella musicola isolate GNI 494 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646497.1 | Mycosphaerella musicola isolate GNI 492 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646496.1 | Mycosphaerella musicola isolate GIN 490 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646495.1 | Mycosphaerella musicola isolate CMR 100 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646494.1 | Mycosphaerella musicola isolate CMR 061 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646493.1 | Mycosphaerella musicola isolate BRA 015 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646492.1 | Mycosphaerella musicola isolate BRA 014 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646491.1 | Mycosphaerella musicola isolate BRA 013 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646490.1 | Mycosphaerella musicola isolate UQ 2268 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646489.1 | Mycosphaerella musicola isolate UQ 2265 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646488.1 | Mycosphaerella musicola isolate UQ 2261 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646487.1 | Mycosphaerella musicola isolate UQ 1987 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646486.1 | Mycosphaerella musicola isolate UQ 1669 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|AY646485.1 | Mycosphaerella musicola isolate BF 388 18S ribosomal RNA gene,
partial sequence; internal transcribed spacer 1, 5.8S
ribosomal RNA gene, and internal transcribed spacer 2,
complete sequence; and 26S ribosomal RNA gene, partial
sequence
Length = 539
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 gccggcgagctcgtcgccgg 203
||||||||||||||||||||
Sbjct: 99 gccggcgagctcgtcgccgg 118
>gb|U72314.1 |RPLCAT02 Rhizomys pruinosus lecithin:cholesterol acyl transferase (LCAT)
gene, exon 6 and partial cds
Length = 474
Score = 40.1 bits (20), Expect = 8.2
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 270 tgttcagctgatctgtacaattca 293
|||||||||||||||||| |||||
Sbjct: 454 tgttcagctgatctgtaccattca 431
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,625,208
Number of Sequences: 3902068
Number of extensions: 4625208
Number of successful extensions: 106985
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 106131
Number of HSP's gapped (non-prelim): 873
length of query: 599
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 576
effective length of database: 17,143,297,704
effective search space: 9874539477504
effective search space used: 9874539477504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)