Clone Name | basdf05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_479828.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2362 Score = 446 bits (225), Expect = e-122 Identities = 360/405 (88%) Strand = Plus / Plus Query: 36 aggtgccaatggcaatgtccaagatgatgaccatgagaagctgaggaagtacaagaggga 95 |||||||||||| |||||||||||||||| |||||||||||||||| |||||||| || Sbjct: 1434 aggtgccaatggggatgtccaagatgatgaacatgagaagctgaggaggtacaagaaaga 1493 Query: 96 ggctgtgtctatgatacatgagtacttcctttctgatgatatagcagagcttattcgcac 155 |||||| |||||||| ||||||||||| || ||||||||| || | ||| ||||||||| Sbjct: 1494 ggctgtttctatgattcatgagtactttctctctgatgatgtacctgagattattcgcag 1553 Query: 156 acttgaagagcttggtttaccagagtacaacccggtctttatcaagaaattgataacaat 215 || |||||||||||| |||||||||||||| |||||||| ||||| | |||||||| Sbjct: 1554 cctcaaagagcttggttctccagagtacaaccccgtctttattaagaagcttataacaat 1613 Query: 216 tgccatggaccgcaagaacagggagaaagagatggcatcagttctcctatcctcattaag 275 ||| ||||||||||| |||||||||||||||||||| ||| |||| |||||||||||||| Sbjct: 1614 tgctatggaccgcaaaaacagggagaaagagatggcttcaattcttctatcctcattaag 1673 Query: 276 catggagctattctctagtgaagacattgtcaaggggttcataatgcttctcgaatctgc 335 |||||| | ||||| | ||||||||||||||||| |||||||||||||| |||||||| Sbjct: 1674 catggaattgttctcaacagaagacattgtcaagggtttcataatgcttcttgaatctgc 1733 Query: 336 agaagatactgcactggacatattggatgcctcagatgagcttggactgttcctagcgag 395 ||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || Sbjct: 1734 agaagataccgcacttgatatattggatgcctcagatgagctgggactgttcctagccag 1793 Query: 396 ggcagtgatcgatgatgtgcttgcgcctctgaacttagatgagat 440 |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1794 agcagtgattgatgatgtgcttgcgcctctgaacttagatgagat 1838
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 446 bits (225), Expect = e-122 Identities = 360/405 (88%) Strand = Plus / Minus Query: 36 aggtgccaatggcaatgtccaagatgatgaccatgagaagctgaggaagtacaagaggga 95 |||||||||||| |||||||||||||||| |||||||||||||||| |||||||| || Sbjct: 1116691 aggtgccaatggggatgtccaagatgatgaacatgagaagctgaggaggtacaagaaaga 1116632 Query: 96 ggctgtgtctatgatacatgagtacttcctttctgatgatatagcagagcttattcgcac 155 |||||| |||||||| ||||||||||| || ||||||||| || | ||| ||||||||| Sbjct: 1116631 ggctgtttctatgattcatgagtactttctctctgatgatgtacctgagattattcgcag 1116572 Query: 156 acttgaagagcttggtttaccagagtacaacccggtctttatcaagaaattgataacaat 215 || |||||||||||| |||||||||||||| |||||||| ||||| | |||||||| Sbjct: 1116571 cctcaaagagcttggttctccagagtacaaccccgtctttattaagaagcttataacaat 1116512 Query: 216 tgccatggaccgcaagaacagggagaaagagatggcatcagttctcctatcctcattaag 275 ||| ||||||||||| |||||||||||||||||||| ||| |||| |||||||||||||| Sbjct: 1116511 tgctatggaccgcaaaaacagggagaaagagatggcttcaattcttctatcctcattaag 1116452 Query: 276 catggagctattctctagtgaagacattgtcaaggggttcataatgcttctcgaatctgc 335 |||||| | ||||| | ||||||||||||||||| |||||||||||||| |||||||| Sbjct: 1116451 catggaattgttctcaacagaagacattgtcaagggtttcataatgcttcttgaatctgc 1116392 Query: 336 agaagatactgcactggacatattggatgcctcagatgagcttggactgttcctagcgag 395 ||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || Sbjct: 1116391 agaagataccgcacttgatatattggatgcctcagatgagctgggactgttcctagccag 1116332 Query: 396 ggcagtgatcgatgatgtgcttgcgcctctgaacttagatgagat 440 |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1116331 agcagtgattgatgatgtgcttgcgcctctgaacttagatgagat 1116287
>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1203H11 Length = 156561 Score = 446 bits (225), Expect = e-122 Identities = 360/405 (88%) Strand = Plus / Minus Query: 36 aggtgccaatggcaatgtccaagatgatgaccatgagaagctgaggaagtacaagaggga 95 |||||||||||| |||||||||||||||| |||||||||||||||| |||||||| || Sbjct: 29928 aggtgccaatggggatgtccaagatgatgaacatgagaagctgaggaggtacaagaaaga 29869 Query: 96 ggctgtgtctatgatacatgagtacttcctttctgatgatatagcagagcttattcgcac 155 |||||| |||||||| ||||||||||| || ||||||||| || | ||| ||||||||| Sbjct: 29868 ggctgtttctatgattcatgagtactttctctctgatgatgtacctgagattattcgcag 29809 Query: 156 acttgaagagcttggtttaccagagtacaacccggtctttatcaagaaattgataacaat 215 || |||||||||||| |||||||||||||| |||||||| ||||| | |||||||| Sbjct: 29808 cctcaaagagcttggttctccagagtacaaccccgtctttattaagaagcttataacaat 29749 Query: 216 tgccatggaccgcaagaacagggagaaagagatggcatcagttctcctatcctcattaag 275 ||| ||||||||||| |||||||||||||||||||| ||| |||| |||||||||||||| Sbjct: 29748 tgctatggaccgcaaaaacagggagaaagagatggcttcaattcttctatcctcattaag 29689 Query: 276 catggagctattctctagtgaagacattgtcaaggggttcataatgcttctcgaatctgc 335 |||||| | ||||| | ||||||||||||||||| |||||||||||||| |||||||| Sbjct: 29688 catggaattgttctcaacagaagacattgtcaagggtttcataatgcttcttgaatctgc 29629 Query: 336 agaagatactgcactggacatattggatgcctcagatgagcttggactgttcctagcgag 395 ||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || Sbjct: 29628 agaagataccgcacttgatatattggatgcctcagatgagctgggactgttcctagccag 29569 Query: 396 ggcagtgatcgatgatgtgcttgcgcctctgaacttagatgagat 440 |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 29568 agcagtgattgatgatgtgcttgcgcctctgaacttagatgagat 29524
>dbj|AK102447.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093O03, full insert sequence Length = 2790 Score = 446 bits (225), Expect = e-122 Identities = 360/405 (88%) Strand = Plus / Plus Query: 36 aggtgccaatggcaatgtccaagatgatgaccatgagaagctgaggaagtacaagaggga 95 |||||||||||| |||||||||||||||| |||||||||||||||| |||||||| || Sbjct: 1434 aggtgccaatggggatgtccaagatgatgaacatgagaagctgaggaggtacaagaaaga 1493 Query: 96 ggctgtgtctatgatacatgagtacttcctttctgatgatatagcagagcttattcgcac 155 |||||| |||||||| ||||||||||| || ||||||||| || | ||| ||||||||| Sbjct: 1494 ggctgtttctatgattcatgagtactttctctctgatgatgtacctgagattattcgcag 1553 Query: 156 acttgaagagcttggtttaccagagtacaacccggtctttatcaagaaattgataacaat 215 || |||||||||||| |||||||||||||| |||||||| ||||| | |||||||| Sbjct: 1554 cctcaaagagcttggttctccagagtacaaccccgtctttattaagaagcttataacaat 1613 Query: 216 tgccatggaccgcaagaacagggagaaagagatggcatcagttctcctatcctcattaag 275 ||| ||||||||||| |||||||||||||||||||| ||| |||| |||||||||||||| Sbjct: 1614 tgctatggaccgcaaaaacagggagaaagagatggcttcaattcttctatcctcattaag 1673 Query: 276 catggagctattctctagtgaagacattgtcaaggggttcataatgcttctcgaatctgc 335 |||||| | ||||| | ||||||||||||||||| |||||||||||||| |||||||| Sbjct: 1674 catggaattgttctcaacagaagacattgtcaagggtttcataatgcttcttgaatctgc 1733 Query: 336 agaagatactgcactggacatattggatgcctcagatgagcttggactgttcctagcgag 395 ||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || Sbjct: 1734 agaagataccgcacttgatatattggatgcctcagatgagctgggactgttcctagccag 1793 Query: 396 ggcagtgatcgatgatgtgcttgcgcctctgaacttagatgagat 440 |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1794 agcagtgattgatgatgtgcttgcgcctctgaacttagatgagat 1838
>dbj|AK067413.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100H24, full insert sequence Length = 2320 Score = 446 bits (225), Expect = e-122 Identities = 360/405 (88%) Strand = Plus / Plus Query: 36 aggtgccaatggcaatgtccaagatgatgaccatgagaagctgaggaagtacaagaggga 95 |||||||||||| |||||||||||||||| |||||||||||||||| |||||||| || Sbjct: 1052 aggtgccaatggggatgtccaagatgatgaacatgagaagctgaggaggtacaagaaaga 1111 Query: 96 ggctgtgtctatgatacatgagtacttcctttctgatgatatagcagagcttattcgcac 155 |||||| |||||||| ||||||||||| || ||||||||| || | ||| ||||||||| Sbjct: 1112 ggctgtttctatgattcatgagtactttctctctgatgatgtacctgagattattcgcag 1171 Query: 156 acttgaagagcttggtttaccagagtacaacccggtctttatcaagaaattgataacaat 215 || |||||||||||| |||||||||||||| |||||||| ||||| | |||||||| Sbjct: 1172 cctcaaagagcttggttctccagagtacaaccccgtctttattaagaagcttataacaat 1231 Query: 216 tgccatggaccgcaagaacagggagaaagagatggcatcagttctcctatcctcattaag 275 ||| ||||||||||| |||||||||||||||||||| ||| |||| |||||||||||||| Sbjct: 1232 tgctatggaccgcaaaaacagggagaaagagatggcttcaattcttctatcctcattaag 1291 Query: 276 catggagctattctctagtgaagacattgtcaaggggttcataatgcttctcgaatctgc 335 |||||| | ||||| | ||||||||||||||||| |||||||||||||| |||||||| Sbjct: 1292 catggaattgttctcaacagaagacattgtcaagggtttcataatgcttcttgaatctgc 1351 Query: 336 agaagatactgcactggacatattggatgcctcagatgagcttggactgttcctagcgag 395 ||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || Sbjct: 1352 agaagataccgcacttgatatattggatgcctcagatgagctgggactgttcctagccag 1411 Query: 396 ggcagtgatcgatgatgtgcttgcgcctctgaacttagatgagat 440 |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1412 agcagtgattgatgatgtgcttgcgcctctgaacttagatgagat 1456
>gb|AY104255.1| Zea mays PCO124332 mRNA sequence Length = 1019 Score = 218 bits (110), Expect = 1e-53 Identities = 203/234 (86%) Strand = Plus / Plus Query: 208 ataacaattgccatggaccgcaagaacagggagaaagagatggcatcagttctcctatcc 267 ||||||||||| |||||||||||||||||||||||||| |||||||| ||||| || | Sbjct: 14 ataacaattgctatggaccgcaagaacagggagaaagaaatggcatcggttcttctccct 73 Query: 268 tcattaagcatggagctattctctagtgaagacattgtcaaggggttcataatgcttctc 327 ||||||||||||||||| ||||| ||||||||| | |||||| || ||||||| || Sbjct: 74 tcattaagcatggagctgttctcgtctgaagacatcgccaagggatttgtaatgctcctt 133 Query: 328 gaatctgcagaagatactgcactggacatattggatgcctcagatgagcttggactgttc 387 |||||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 134 gaatctgcagaagacaccgcgctggacatattggatgcctcagatgagctgggactgttc 193 Query: 388 ctagcgagggcagtgatcgatgatgtgcttgcgcctctgaacttagatgagatt 441 ||||| ||||| ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct: 194 ctagccagggctgtgattgatgacgttctcgcacctctaaacttggatgagatt 247
>dbj|AK104476.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-F02, full insert sequence Length = 995 Score = 196 bits (99), Expect = 4e-47 Identities = 126/135 (93%) Strand = Plus / Plus Query: 306 caaggggttcataatgcttctcgaatctgcagaagatactgcactggacatattggatgc 365 |||||| |||||||||||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct: 1 caagggtttcataatgcttcttgaatctgcagaagataccgcacttgatatattggatgc 60 Query: 366 ctcagatgagcttggactgttcctagcgagggcagtgatcgatgatgtgcttgcgcctct 425 |||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||| Sbjct: 61 ctcagatgagctgggactgttcctagccagagcagtgattgatgatgtgcttgcgcctct 120 Query: 426 gaacttagatgagat 440 ||||||||||||||| Sbjct: 121 gaacttagatgagat 135
>dbj|AK060858.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-F06, full insert sequence Length = 995 Score = 196 bits (99), Expect = 4e-47 Identities = 126/135 (93%) Strand = Plus / Plus Query: 306 caaggggttcataatgcttctcgaatctgcagaagatactgcactggacatattggatgc 365 |||||| |||||||||||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct: 1 caagggtttcataatgcttcttgaatctgcagaagataccgcacttgatatattggatgc 60 Query: 366 ctcagatgagcttggactgttcctagcgagggcagtgatcgatgatgtgcttgcgcctct 425 |||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||| Sbjct: 61 ctcagatgagctgggactgttcctagccagagcagtgattgatgatgtgcttgcgcctct 120 Query: 426 gaacttagatgagat 440 ||||||||||||||| Sbjct: 121 gaacttagatgagat 135
>gb|BT018954.1| Zea mays clone Contig146.F mRNA sequence Length = 1057 Score = 172 bits (87), Expect = 6e-40 Identities = 174/203 (85%) Strand = Plus / Plus Query: 208 ataacaattgccatggaccgcaagaacagggagaaagagatggcatcagttctcctatcc 267 |||||||| || |||||||||||||||||||||||||| |||| ||| | ||| || | Sbjct: 48 ataacaatcgctatggaccgcaagaacagggagaaagaaatggaatcggatcttctccct 107 Query: 268 tcattaagcatggagctattctctagtgaagacattgtcaaggggttcataatgcttctc 327 ||||||||||||||||| ||||| | |||||||| | |||||| ||||||||||| || Sbjct: 108 tcattaagcatggagctgttctcgggggaagacatcgccaagggattcataatgctcctt 167 Query: 328 gaatctgcagaagatactgcactggacatattggatgcctcagatgagcttggactgttc 387 |||||||||||||| || || |||||||||| |||||||||||| || || ||||||||| Sbjct: 168 gaatctgcagaagacaccgcgctggacatatcggatgcctcagaagaactgggactgttc 227 Query: 388 ctagcgagggcagtgatcgatga 410 ||||| ||||| ||||| ||||| Sbjct: 228 ctagccagggctgtgattgatga 250
>ref|NM_114699.3| Arabidopsis thaliana unknown protein AT3G48390 mRNA, complete cds Length = 2304 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 313 ttcataatgcttctcgaatctgcagaagatactgcactggacatattggatgcctcagat 372 ||||| ||||| |||||||| ||||||||||| ||| | ||||| || | || ||||| Sbjct: 1458 ttcatcatgctcctcgaatccgcagaagatacagcattagacatcttagcagcatcagac 1517 Query: 373 gagcttggactgttcctagcgagggcagtgatcgatgatgt 413 ||||||| ||||| ||||| || || |||||||||||||| Sbjct: 1518 gagcttgctctgtttctagctagagctgtgatcgatgatgt 1558
>emb|AL049659.2|ATT29H11 Arabidopsis thaliana DNA chromosome 3, BAC clone T29H11 Length = 97488 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 313 ttcataatgcttctcgaatctgcagaagatactgcactggacatattggatgcctcagat 372 ||||| ||||| |||||||| ||||||||||| ||| | ||||| || | || ||||| Sbjct: 55282 ttcatcatgctcctcgaatccgcagaagatacagcattagacatcttagcagcatcagac 55341 Query: 373 gagcttggactgttcctagcgagggcagtgatcgatgatgt 413 ||||||| ||||| ||||| || || |||||||||||||| Sbjct: 55342 gagcttgctctgtttctagctagagctgtgatcgatgatgt 55382
>gb|AY074567.1| Arabidopsis thaliana AT3g48390/T29H11_90 mRNA, complete cds Length = 2183 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 313 ttcataatgcttctcgaatctgcagaagatactgcactggacatattggatgcctcagat 372 ||||| ||||| |||||||| ||||||||||| ||| | ||||| || | || ||||| Sbjct: 1439 ttcatcatgctcctcgaatccgcagaagatacagcattagacatcttagcagcatcagac 1498 Query: 373 gagcttggactgttcctagcgagggcagtgatcgatgatgt 413 ||||||| ||||| ||||| || || |||||||||||||| Sbjct: 1499 gagcttgctctgtttctagctagagctgtgatcgatgatgt 1539
>gb|BT002208.1| Arabidopsis thaliana At3g48390/T29H11_90 mRNA, complete cds Length = 1902 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 313 ttcataatgcttctcgaatctgcagaagatactgcactggacatattggatgcctcagat 372 ||||| ||||| |||||||| ||||||||||| ||| | ||||| || | || ||||| Sbjct: 1282 ttcatcatgctcctcgaatccgcagaagatacagcattagacatcttagcagcatcagac 1341 Query: 373 gagcttggactgttcctagcgagggcagtgatcgatgatgt 413 ||||||| ||||| ||||| || || |||||||||||||| Sbjct: 1342 gagcttgctctgtttctagctagagctgtgatcgatgatgt 1382
>gb|DQ428031.1| Sorghum propinquum locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428030.1| Sorghum bicolor voucher PI585454 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428029.1| Sorghum bicolor voucher PI267539 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428028.1| Sorghum bicolor voucher PI267408 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428027.1| Sorghum bicolor voucher PI221607 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428026.1| Sorghum bicolor voucher PI152702 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428025.1| Sorghum bicolor voucher NSL92371 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428024.1| Sorghum bicolor voucher NSL87902 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428023.1| Sorghum bicolor voucher NSL87666 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428022.1| Sorghum bicolor voucher NSL77217 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428021.1| Sorghum bicolor voucher NSL77034 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428020.1| Sorghum bicolor voucher NSL56174 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428019.1| Sorghum bicolor voucher NSL56003 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428018.1| Sorghum bicolor voucher NSL55243 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428017.1| Sorghum bicolor voucher NSL51365 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428016.1| Sorghum bicolor voucher NSL51030 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428015.1| Sorghum bicolor voucher NSL50875 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|DQ428014.1| Sorghum bicolor voucher BTx623 locus pPAP04A10 genomic sequence Length = 806 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcagttctcctatc 266 ||||||||||||||||||||| || ||||| Sbjct: 335 ggagaaagagatggcatcagtgcttctatc 364
>gb|AC092710.6| Mus musculus chromosome 13, clone RP23-5A19, complete sequence Length = 268129 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 gcacacttgaagagcttggt 171 |||||||||||||||||||| Sbjct: 158988 gcacacttgaagagcttggt 158969
>gb|AC025219.6| Homo sapiens chromosome 15, clone RP11-276M12, complete sequence Length = 144244 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ggagaaagagatggcatcag 256 |||||||||||||||||||| Sbjct: 108268 ggagaaagagatggcatcag 108287
>emb|BX927371.12| Zebrafish DNA sequence from clone DKEY-1C17 in linkage group 7, complete sequence Length = 154034 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 atgtccaagatgatgaccat 69 |||||||||||||||||||| Sbjct: 24271 atgtccaagatgatgaccat 24252
>gb|AC132302.3| Mus musculus BAC clone RP24-279N5 from chromosome 3, complete sequence Length = 157307 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gggagaaagagatggcatca 255 |||||||||||||||||||| Sbjct: 33150 gggagaaagagatggcatca 33131
>gb|AY165512.1| Homo sapiens menage a trois 1 (CAK assembly factor) (MNAT1) gene, complete cds Length = 237446 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 aagaacagggagaaagagat 248 |||||||||||||||||||| Sbjct: 10858 aagaacagggagaaagagat 10839
>ref|XM_782933.1| PREDICTED: Strongylocentrotus purpuratus similar to Golgi apparatus protein 1 precursor (Golgi sialoglycoprotein MG-160) (E-selectin ligand 1) (ESL-1) (Selel) (LOC583005), mRNA Length = 1218 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 aacagggagaaagagatggc 251 |||||||||||||||||||| Sbjct: 679 aacagggagaaagagatggc 698
>ref|XM_784898.1| PREDICTED: Strongylocentrotus purpuratus similar to Golgi apparatus protein 1 precursor (Golgi sialoglycoprotein MG-160) (E-selectin ligand 1) (ESL-1) (Selel) (LOC585057), partial mRNA Length = 2466 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 aacagggagaaagagatggc 251 |||||||||||||||||||| Sbjct: 2080 aacagggagaaagagatggc 2099 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 aacagggagaaagagatggc 251 |||||||||||||||||||| Sbjct: 1849 aacagggagaaagagatggc 1868
>gb|AC156615.7| Mus musculus chromosome 3, clone RP23-1B20, complete sequence Length = 210003 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gggagaaagagatggcatca 255 |||||||||||||||||||| Sbjct: 114372 gggagaaagagatggcatca 114353
>gb|AC103976.6| Homo sapiens chromosome 15, clone RP11-121E15, complete sequence Length = 182826 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ggagaaagagatggcatcag 256 |||||||||||||||||||| Sbjct: 119244 ggagaaagagatggcatcag 119225
>ref|XM_691549.1| PREDICTED: Danio rerio similar to chromodomain helicase DNA binding protein 3 isoform 2 (LOC568230), mRNA Length = 5648 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 atgtccaagatgatgaccat 69 |||||||||||||||||||| Sbjct: 762 atgtccaagatgatgaccat 781
>gb|AC080162.7| Homo sapiens BAC clone RP11-400L8 from 2, complete sequence Length = 171653 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 agaagctgaggaagtacaagaggg 94 ||||| |||||||||||||||||| Sbjct: 74034 agaaggtgaggaagtacaagaggg 74057
>gb|AC006582.13|AC006582 Pan troglodytes 12cp12 BAC RPCI43-77C18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186092 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 attctctagtgaagacattg 304 |||||||||||||||||||| Sbjct: 125503 attctctagtgaagacattg 125484
>emb|AL132777.4|CNS01DTI Human chromosome 14 DNA sequence BAC R-307P22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 191464 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 aagaacagggagaaagagat 248 |||||||||||||||||||| Sbjct: 117499 aagaacagggagaaagagat 117518
>emb|CR855375.8| Zebrafish DNA sequence from clone CH211-159E12 in linkage group 11, complete sequence Length = 178231 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 caagaaattgataacaattg 217 |||||||||||||||||||| Sbjct: 59738 caagaaattgataacaattg 59719
>emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, complete sequence Length = 163121 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 atgtccaagatgatgaccat 69 |||||||||||||||||||| Sbjct: 17435 atgtccaagatgatgaccat 17416
>gb|AC011604.10| Homo sapiens 12p12-31.7-37.2 BAC RP11-80N2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175606 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 attctctagtgaagacattg 304 |||||||||||||||||||| Sbjct: 64058 attctctagtgaagacattg 64077 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,495,372 Number of Sequences: 3902068 Number of extensions: 3495372 Number of successful extensions: 67682 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67587 Number of HSP's gapped (non-prelim): 95 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)