Clone Name | basdd23 |
---|---|
Clone Library Name | barley_pub |
>gb|AF509748.1| Hordeum vulgare subsp. vulgare Morex barley stem rust resistance protein (Rpg1) gene, complete cds Length = 17974 Score = 69.9 bits (35), Expect = 6e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 128 tgaataattaataaaatggctgtatacatcgtcctgatgcagaggccgggg 178 |||||||||||||||||||||| || |||| ||| |||||||||||||||| Sbjct: 5282 tgaataattaataaaatggctgcatgcatcttccagatgcagaggccgggg 5232
>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like putative defense response protein, and putative alliin lyase genes, complete cds; and unknown genes Length = 106618 Score = 65.9 bits (33), Expect = 9e-08 Identities = 58/65 (89%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 129 gaataattaataaaatggctgtatacatcgtcctgatgcagaggcc-ggggtcctcctcc 187 |||||||||||||| ||| ||||| ||||| || |||||||||||| |||||| |||||| Sbjct: 36869 gaataattaataaagtggttgtatgcatcgcccagatgcagaggccgggggtcatcctcc 36928 Query: 188 ttttc 192 ||||| Sbjct: 36929 ttttc 36933 Score = 46.1 bits (23), Expect = 0.086 Identities = 62/75 (82%) Strand = Plus / Minus Query: 118 aaggtcttgttgaataattaataaaatggctgtatacatcgtcctgatgcagaggccggg 177 ||||| ||| |||||||||||| |||||| | ||| |||| || ||||| ||| |||| Sbjct: 34576 aaggtgttggtgaataattaatgaaatggttatatgcatcactctaatgcaaaggtcggg 34517 Query: 178 gtcctcctccttttc 192 ||| ||||||||||| Sbjct: 34516 gtcatcctccttttc 34502
>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence Length = 142018 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 129 gaataattaataaaatggctgtatacatcgtcctgatgcagaggccggggt 179 ||||||||||||| ||||||| || |||| ||| ||||||||||||||||| Sbjct: 74842 gaataattaataatatggctgcatgcatcctccagatgcagaggccggggt 74892
>emb|CR626934.1| Triticum aestivum Length = 94398 Score = 61.9 bits (31), Expect = 1e-06 Identities = 56/63 (88%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 129 gaataattaataaaatggctgtatacatcgtcctgatgcagaggcc-ggggtcctcctcc 187 |||||||||||||| |||| |||| ||||| || |||||||||||| |||||| |||||| Sbjct: 12362 gaataattaataaagtggccgtatgcatcgcccagatgcagaggccgggggtcatcctcc 12421 Query: 188 ttt 190 ||| Sbjct: 12422 ttt 12424 Score = 58.0 bits (29), Expect = 2e-05 Identities = 57/65 (87%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 129 gaataattaataaaatggctgtatacatcgtcctgatgcagaggcc-ggggtcctcctcc 187 ||||||| ||||||||||| |||| |||| || |||||||||||| |||||| |||||| Sbjct: 45786 gaataatcaataaaatggccgtatgcatctcccagatgcagaggccgggggtcatcctcc 45845 Query: 188 ttttc 192 ||||| Sbjct: 45846 ttttc 45850
>emb|CR626926.1| Aegilops tauschii Length = 94421 Score = 61.9 bits (31), Expect = 1e-06 Identities = 56/63 (88%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 129 gaataattaataaaatggctgtatacatcgtcctgatgcagaggcc-ggggtcctcctcc 187 |||||||||||||| |||| |||| ||||| || |||||||||||| |||||| |||||| Sbjct: 10458 gaataattaataaagtggccgtatgcatcgcccagatgcagaggccgggggtcatcctcc 10517 Query: 188 ttt 190 ||| Sbjct: 10518 ttt 10520
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 130 aataattaataaaatggctgtatacatcgtcctgatgcagaggccggggtc 180 ||||||||||||| |||| |||| ||||| || |||||||||||||||||| Sbjct: 200445 aataattaataaagtggccgtatgcatcgcccagatgcagaggccggggtc 200395
>gb|AY534122.1|SEG_AY534122S1 Aegilops tauschii transposon XJ, complete sequence; putative Bowman Birk trypsin inhibitor gene, complete cds; Stowaway MITE, complete sequence; and insertion sequences xl_tt1a and xl_tt1b putative ripening related protein genes, complete cds Length = 26073 Score = 60.0 bits (30), Expect = 6e-06 Identities = 58/66 (87%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 128 tgaataattaataaaatggctgtatacatcgtcctgatgcagaggcc-ggggtcctcctc 186 |||||||||||| || |||||| || |||||||| |||||||| || |||||||||||| Sbjct: 9375 tgaataattaattaagtggctgcatgcatcgtccagatgcagaaaccgggggtcctcctc 9316 Query: 187 cttttc 192 |||||| Sbjct: 9315 cttttc 9310
>gb|AY951948.1| Triticum monococcum CRT/DRE binding factor 14 (CBF14) gene, complete cds Length = 5244 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 130 aataattaataaaatggctgtatacatcgtcctgatgcagaggccggggtcctcctcctt 189 |||||| |||||| |||| |||| |||| || |||||||||||||||||| |||| ||| Sbjct: 2139 aataatcaataaagtggccgtatgcatctcccagatgcagaggccggggtcatcctactt 2080 Query: 190 ttc 192 ||| Sbjct: 2079 ttc 2077
>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence Length = 168746 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 164 atgcagaggccggggtcctcctccttttc 192 ||||||||||| ||||||||||||||||| Sbjct: 85043 atgcagaggccagggtcctcctccttttc 85015
>emb|X83767.1|PSOEP75MR P.sativum mRNA for chloroplastic outer envelope membrane protein (OEP75) Length = 3318 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 240 atctttctccaaaaaggaaaaatactgca 268 |||||||||||||| |||||||||||||| Sbjct: 3001 atctttctccaaaacggaaaaatactgca 2973
>gb|AY622792.2| Aegilops searsii cultivar TA 1837 puroindoline a (Pina-Ss1) gene, Pina-Ss1-a allele, complete cds Length = 1395 Score = 50.1 bits (25), Expect = 0.005 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 137 aataaaatggctgtatacatcgtcctgatgcagaggcc-ggggtcctcctccttttc 192 |||| |||||| |||| ||||| || |||||||||||| |||||| ||||||||||| Sbjct: 506 aatacaatggccgtatgcatcgcccagatgcagaggccgggggtcatcctccttttc 562
>gb|L36858.1|PEAIAP75A Pisum sativum outer membrane protein (IAP75) mRNA, complete cds Length = 2755 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 240 atctttctccaaaaaggaaaaatactgca 268 |||||||||||||| |||||||||||||| Sbjct: 2432 atctttctccaaaacggaaaaatactgca 2404
>emb|CR626890.8| Zebrafish DNA sequence from clone DKEY-83J7 in linkage group 15, complete sequence Length = 211127 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 361 actgagaatagaataatagtagaa 384 |||||||||||||||||||||||| Sbjct: 7404 actgagaatagaataatagtagaa 7427
>emb|BX324206.6| Zebrafish DNA sequence from clone CH211-66O10 in linkage group 15, complete sequence Length = 164638 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 361 actgagaatagaataatagtagaa 384 |||||||||||||||||||||||| Sbjct: 56302 actgagaatagaataatagtagaa 56325
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 46.1 bits (23), Expect = 0.086 Identities = 38/43 (88%) Strand = Plus / Plus Query: 134 attaataaaatggctgtatacatcgtcctgatgcagaggccgg 176 ||||||||| ||| |||| |||||| |||||||||||||||| Sbjct: 59435 attaataaagtggtcgtatgcatcgtgctgatgcagaggccgg 59477
>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds Length = 20754 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Plus Query: 144 tggctgtatacatcgtcctgatgcagaggccgggg 178 |||| |||| |||||| |||||||||||||||||| Sbjct: 3034 tggccgtatgcatcgttctgatgcagaggccgggg 3068
>gb|AY622793.2| Aegilops searsii cultivar TA 2355 puroindoline a (Pina-Ss1) gene, Pina-Ss1-b allele, complete cds Length = 1396 Score = 46.1 bits (23), Expect = 0.086 Identities = 42/47 (89%), Gaps = 1/47 (2%) Strand = Plus / Plus Query: 147 ctgtatacatcgtcctgatgcagaggcc-ggggtcctcctccttttc 192 |||||| ||||| || |||||||||||| |||||| ||||||||||| Sbjct: 517 ctgtatgcatcgcccagatgcagaggccgggggtcatcctccttttc 563
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Minus Query: 239 tatctttctccaaaaaggaaaaa 261 ||||||||||||||||||||||| Sbjct: 609263 tatctttctccaaaaaggaaaaa 609241
>gb|AC084586.1|CBRG41E12 Caenorhabditis briggsae cosmid G41E12, complete sequence Length = 35317 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 aatttggaatatctgaaattct 116 |||||||||||||||||||||| Sbjct: 23160 aatttggaatatctgaaattct 23181
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 130 aataattaataaaatggctgtatacatcgtcctgatgcaga 170 |||||||||||||||| ||| || ||||||| |||||||| Sbjct: 67352 aataattaataaaatgactgcatgcatcgtctggatgcaga 67392
>gb|AC112676.8| Mus musculus chromosome 9, clone RP23-174F7, complete sequence Length = 230293 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 tctttctccaaaaaggaaaaa 261 ||||||||||||||||||||| Sbjct: 15172 tctttctccaaaaaggaaaaa 15152
>gb|AC110241.17| Mus musculus chromosome 16, clone RP23-129F22, complete sequence Length = 256720 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 tgttgaataattaataaaatg 145 ||||||||||||||||||||| Sbjct: 50 tgttgaataattaataaaatg 70
>emb|AL589745.8| Human DNA sequence from clone RP11-478K15 on chromosome 13 Contains parts of four novel genes, the 5' end of a novel gene and a CpG island, complete sequence Length = 170765 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 agaaaaatctgaaattcttaa 214 ||||||||||||||||||||| Sbjct: 36592 agaaaaatctgaaattcttaa 36572
>dbj|AB100035.1| Triticum aestivum TaGlu1a mRNA for beta-glucosidase, complete cds Length = 2355 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 150 tatacatcgtcctgatgcagaggccgggg 178 |||||||| | |||||||||||||||||| Sbjct: 2177 tatacatcattctgatgcagaggccgggg 2205
>gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, complete sequence Length = 243771 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 tgttgaataattaataaaatg 145 ||||||||||||||||||||| Sbjct: 174997 tgttgaataattaataaaatg 175017
>gb|AC008541.6| Homo sapiens chromosome 5 clone CTC-498M5, complete sequence Length = 148043 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 tctccaaaaaggaaaaatact 265 ||||||||||||||||||||| Sbjct: 101495 tctccaaaaaggaaaaatact 101515
>gb|AC106767.2| Homo sapiens chromosome 5 clone RP11-269M17, complete sequence Length = 143792 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 tctccaaaaaggaaaaatact 265 ||||||||||||||||||||| Sbjct: 2790 tctccaaaaaggaaaaatact 2810
>gb|AC151906.3| Mus musculus BAC clone RP23-177B17 from chromosome 9, complete sequence Length = 215508 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 tctttctccaaaaaggaaaaa 261 ||||||||||||||||||||| Sbjct: 27349 tctttctccaaaaaggaaaaa 27369
>gb|AF153100.1|AF153100 Apis nuluensis haplotype 2 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1041 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 ataattaataaaatggctgta 151 ||||||||||||||||||||| Sbjct: 374 ataattaataaaatggctgta 354
>gb|AF153099.1|AF153099 Apis nuluensis haplotype 1 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1041 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 ataattaataaaatggctgta 151 ||||||||||||||||||||| Sbjct: 374 ataattaataaaatggctgta 354
>dbj|AB191303.1| Sus scrofa COL5A1 mRNA for procollagen alpha 1(V), complete cds Length = 5883 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gaggccggggtcctcctcctt 189 ||||||||||||||||||||| Sbjct: 1015 gaggccggggtcctcctcctt 995
>gb|AC084598.1|CBRG42J05 Caenorhabditis briggsae cosmid G42J05, complete sequence Length = 40229 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 aatttggaatatctgaaattc 115 ||||||||||||||||||||| Sbjct: 24431 aatttggaatatctgaaattc 24411
>ref|NM_001014971.1| Sus scrofa procollagen alpha 1(V) (COL5A1), mRNA Length = 5883 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gaggccggggtcctcctcctt 189 ||||||||||||||||||||| Sbjct: 1015 gaggccggggtcctcctcctt 995
>gb|AC145691.5| Mus musculus chromosome 1, clone RP24-278B15, complete sequence Length = 164151 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 atttggaatatctgaaattct 116 ||||||||||||||||||||| Sbjct: 24752 atttggaatatctgaaattct 24732
>dbj|AB097497.1| Sus scrofa COL5A1 mRNA for collagen type 5 alpha 1, partial cds Length = 1553 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gaggccggggtcctcctcctt 189 ||||||||||||||||||||| Sbjct: 1015 gaggccggggtcctcctcctt 995
>gb|AC165413.16| Mus musculus chromosome 1, clone RP23-242C11, complete sequence Length = 186380 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 atttggaatatctgaaattct 116 ||||||||||||||||||||| Sbjct: 180176 atttggaatatctgaaattct 180156
>gb|AY803294.1| Human adenovirus type 14 strain de Wit, complete genome Length = 34764 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 tcgagaaaaatctgaaattc 210 |||||||||||||||||||| Sbjct: 29915 tcgagaaaaatctgaaattc 29934
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ctgaaattctgaaggtcttg 126 |||||||||||||||||||| Sbjct: 918924 ctgaaattctgaaggtcttg 918905
>gb|AF067614.1| Caenorhabditis elegans cosmid T03A1, complete sequence Length = 35318 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 atgtatctttctccaaaaag 255 |||||||||||||||||||| Sbjct: 20795 atgtatctttctccaaaaag 20814
>gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, complete sequence Length = 156547 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tctgaaattcttaacttaca 220 |||||||||||||||||||| Sbjct: 150611 tctgaaattcttaacttaca 150592
>ref|XM_584390.1| PREDICTED: Bos taurus similar to Olfactory receptor 7A5 (Olfactory receptor TPCR92) (LOC507726), mRNA Length = 954 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 gaaattctgaaggtcttgtt 128 |||||||||||||||||||| Sbjct: 37 gaaattctgaaggtcttgtt 18
>gb|AE006382.1| Lactococcus lactis subsp. lactis IL1403 section 144 of 218 of the complete genome Length = 10240 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 124 ttgttgaataattaataaaatggctgtataca 155 |||||||||||| |||||||| |||| ||||| Sbjct: 4176 ttgttgaataataaataaaatagctgaataca 4145
>gb|AY459535.1| Lactobacillus johnsonii prophage Lj965, complete genome Length = 40190 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aaaatggctgtatacatcgt 159 |||||||||||||||||||| Sbjct: 6703 aaaatggctgtatacatcgt 6684
>gb|AC138130.9| Medicago truncatula clone mth2-31d24, complete sequence Length = 146386 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 aattaataaaatggctgtat 152 |||||||||||||||||||| Sbjct: 83484 aattaataaaatggctgtat 83503
>emb|AL359074.12| Human DNA sequence from clone RP11-137L10 on chromosome 10 Contains the 5' end of the PPP3CB gene for protein phosphatase 3 (formerly 2B) catalytic subunit beta isoform (calcineurin A beta), two novel genes (FLJ37318), the 3' end of a novel gene, a ribosomal protein S26 (RPS26) pseudogene and a CpG island, complete sequence Length = 152161 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 agatacttaatgtatctttc 246 |||||||||||||||||||| Sbjct: 105756 agatacttaatgtatctttc 105775
>emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chromosome 9 Contains the 5' end of the gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide (RIG-I), the gene for tumor protein p53-binding protein (TP53BPL), a novel gene, a DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase) (DFFB) (CAD, CPAN, DFF40) pseudogene, a novel gene (FLJ25547), the NDUFB6 gene for NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa (B17), and a CpG island, complete sequence Length = 155585 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ataattaataaaatggctgt 150 |||||||||||||||||||| Sbjct: 148694 ataattaataaaatggctgt 148713
>emb|AJ000883.1|LLJ000883 Lactococcus lactis lactis purDEK operon Length = 3573 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 124 ttgttgaataattaataaaatggctgtataca 155 |||||||||||| |||||||| |||| ||||| Sbjct: 644 ttgttgaataataaataaaatagctgaataca 675
>emb|AL607083.17| Mouse DNA sequence from clone RP23-206E3 on chromosome 11 Contains a novel gene, complete sequence Length = 189495 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 cccttctgcagcatcagttc 29 |||||||||||||||||||| Sbjct: 2755 cccttctgcagcatcagttc 2774
>gb|AC109442.3| Homo sapiens chromosome 5 clone CTC-345B2, complete sequence Length = 71075 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 taacttacaaactcaagata 231 |||||||||||||||||||| Sbjct: 9486 taacttacaaactcaagata 9467
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 tgcgagttgaccaatttgga 102 |||||||||||||||||||| Sbjct: 3978280 tgcgagttgaccaatttgga 3978299
>gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, complete sequence Length = 190681 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 agatacttaatgtatctttc 246 |||||||||||||||||||| Sbjct: 115028 agatacttaatgtatctttc 115009
>gb|AC006834.3| Caenorhabditis elegans cosmid ZK973, complete sequence Length = 66626 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 atgtatctttctccaaaaag 255 |||||||||||||||||||| Sbjct: 10177 atgtatctttctccaaaaag 10196
>gb|AC023932.11| Homo sapiens chromosome 18, clone RP11-510D21, complete sequence Length = 166125 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 aagatacttaatgtatcttt 245 |||||||||||||||||||| Sbjct: 107163 aagatacttaatgtatcttt 107144 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 aagatacttaatgtatcttt 245 |||||||||||||||||||| Sbjct: 105145 aagatacttaatgtatcttt 105126
>gb|AC008650.8| Homo sapiens chromosome 5 clone CTB-186M2, complete sequence Length = 139226 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tctttctccaaaaaggaaaa 260 |||||||||||||||||||| Sbjct: 132089 tctttctccaaaaaggaaaa 132070
>gb|AC020918.6| Homo sapiens chromosome 5 clone CTD-2020C3, complete sequence Length = 175425 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 tctttctccaaaaaggaaaa 260 |||||||||||||||||||| Sbjct: 86587 tctttctccaaaaaggaaaa 86606
>gb|AC018756.5| Homo sapiens chromosome 5 clone CTC-534K6, complete sequence Length = 122005 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 tctttctccaaaaaggaaaa 260 |||||||||||||||||||| Sbjct: 54400 tctttctccaaaaaggaaaa 54419
>gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, complete sequence Length = 247769 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 aataaaatggctgtatacat 156 |||||||||||||||||||| Sbjct: 174101 aataaaatggctgtatacat 174120
>gb|AC016608.5|AC016608 Homo sapiens chromosome 5 clone CTD-2170F21, complete sequence Length = 113626 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tctttctccaaaaaggaaaa 260 |||||||||||||||||||| Sbjct: 44153 tctttctccaaaaaggaaaa 44134
>gb|AC004826.3|AC004826 Homo sapiens PAC clone RP1-309D19 from 5, complete sequence Length = 149172 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 taacttacaaactcaagata 231 |||||||||||||||||||| Sbjct: 68831 taacttacaaactcaagata 68812
>gb|AC074090.7| Homo sapiens BAC clone RP11-132H23 from 2, complete sequence Length = 130369 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tgtatgtagctgtggaggac 71 |||||||||||||||||||| Sbjct: 94370 tgtatgtagctgtggaggac 94351
>gb|AC113382.2| Homo sapiens chromosome 5 clone RP11-325L7, complete sequence Length = 166870 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 taacttacaaactcaagata 231 |||||||||||||||||||| Sbjct: 26213 taacttacaaactcaagata 26232
>gb|AC083810.16| Homo sapiens 12 BAC RP11-809N1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 95838 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 tgaaggtcttgttgaataattaat 139 ||||||||||| |||||||||||| Sbjct: 54670 tgaaggtcttgatgaataattaat 54647
>gb|AC073167.12| Homo sapiens chromosome 15, clone RP11-317G6, complete sequence Length = 174654 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 aatttcccttctgcagcatc 24 |||||||||||||||||||| Sbjct: 91724 aatttcccttctgcagcatc 91705
>gb|AC079834.8| Homo sapiens BAC clone CTD-2308L22 from 2, complete sequence Length = 108621 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 aatatctgaaattctgaagg 121 |||||||||||||||||||| Sbjct: 90255 aatatctgaaattctgaagg 90274
>emb|BX648087.1|HSM808233 Homo sapiens mRNA; cDNA DKFZp686G02226 (from clone DKFZp686G02226) Length = 6266 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 tctttctccaaaaaggaaaa 260 |||||||||||||||||||| Sbjct: 1378 tctttctccaaaaaggaaaa 1397
>dbj|AB070505.1| Human adenovirus type 14 genes for putative pVIII protein, E3 region proteins, fiber protein, complete and partial cds Length = 4654 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 tcgagaaaaatctgaaattc 210 |||||||||||||||||||| Sbjct: 3592 tcgagaaaaatctgaaattc 3611
>emb|AL391158.5|CNS06C83 Human chromosome 14 DNA sequence BAC R-560O13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 202792 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ttgtatgtagctgtggagga 70 |||||||||||||||||||| Sbjct: 174002 ttgtatgtagctgtggagga 174021
>gb|AC102529.18| Mus musculus chromosome 1, clone RP23-36G3, complete sequence Length = 210575 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tctgaaattcttaacttaca 220 |||||||||||||||||||| Sbjct: 13089 tctgaaattcttaacttaca 13070
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aaaatggctgtatacatcgt 159 |||||||||||||||||||| Sbjct: 334478 aaaatggctgtatacatcgt 334459
>emb|BX897750.11| Zebrafish DNA sequence from clone DKEY-278N18, complete sequence Length = 182033 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 aaattcttaacttacaaact 224 |||||||||||||||||||| Sbjct: 2725 aaattcttaacttacaaact 2706
>gb|AC152951.2| Mus musculus 10 BAC RP23-451J19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183431 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aatttggaatatctgaaatt 114 |||||||||||||||||||| Sbjct: 56050 aatttggaatatctgaaatt 56031
>emb|AL445384.3|CNS07ED0 Human chromosome 14 DNA sequence BAC R-460A13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 160750 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ttgtatgtagctgtggagga 70 |||||||||||||||||||| Sbjct: 151315 ttgtatgtagctgtggagga 151296
>gb|L08232.1|ADRE3FIBES Adenovirus 11 E3 region encoding fiber protein gene, complete cds Length = 2481 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 tcgagaaaaatctgaaattc 210 |||||||||||||||||||| Sbjct: 222 tcgagaaaaatctgaaattc 241 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,872,381 Number of Sequences: 3902068 Number of extensions: 4872381 Number of successful extensions: 140190 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 139934 Number of HSP's gapped (non-prelim): 251 length of query: 395 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 373 effective length of database: 17,147,199,772 effective search space: 6395905514956 effective search space used: 6395905514956 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)