Clone Name | basdf10 |
---|---|
Clone Library Name | barley_pub |
>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 393 Score = 54.3 bits (129), Expect = 2e-07 Identities = 26/28 (92%), Positives = 27/28 (96%) Frame = +3 Query: 459 MAAPTSAIGFEGYEKRLEITFNEASIFA 542 MAAP SAIGFEGYEKRLEITF+EASIFA Sbjct: 1 MAAPVSAIGFEGYEKRLEITFSEASIFA 28
>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 400 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/30 (73%), Positives = 26/30 (86%) Frame = +3 Query: 450 TATMAAPTSAIGFEGYEKRLEITFNEASIF 539 +A A+P SAIGFEGYEKRLEITF+EA +F Sbjct: 5 SAADASPVSAIGFEGYEKRLEITFSEAPVF 34
>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 398 Score = 47.0 bits (110), Expect = 3e-05 Identities = 21/25 (84%), Positives = 23/25 (92%) Frame = +3 Query: 468 PTSAIGFEGYEKRLEITFNEASIFA 542 P SAIGFEGYEKRLEITF+EA +FA Sbjct: 11 PVSAIGFEGYEKRLEITFSEAPVFA 35
>DCAM_CATRO (Q42679) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 357 Score = 46.6 bits (109), Expect = 5e-05 Identities = 22/28 (78%), Positives = 24/28 (85%) Frame = +3 Query: 459 MAAPTSAIGFEGYEKRLEITFNEASIFA 542 MA P SAIGFEGYEKRLEI+F E+S FA Sbjct: 1 MALPASAIGFEGYEKRLEISFFESSFFA 28
>DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/28 (78%), Positives = 24/28 (85%) Frame = +3 Query: 459 MAAPTSAIGFEGYEKRLEITFNEASIFA 542 MA TSAIGFEGYEKRLEI+F EA IF+ Sbjct: 1 MALSTSAIGFEGYEKRLEISFFEAGIFS 28
>DCAM_NICSY (O80402) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 361 Score = 43.5 bits (101), Expect = 4e-04 Identities = 20/28 (71%), Positives = 23/28 (82%) Frame = +3 Query: 459 MAAPTSAIGFEGYEKRLEITFNEASIFA 542 MA P SAIGFEG+EKRLEI+F E +FA Sbjct: 3 MALPVSAIGFEGFEKRLEISFFEPGLFA 30
>DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 43.5 bits (101), Expect = 4e-04 Identities = 21/28 (75%), Positives = 23/28 (82%) Frame = +3 Query: 459 MAAPTSAIGFEGYEKRLEITFNEASIFA 542 MA TSAIGFEGYE RLEI+F EA IF+ Sbjct: 1 MALSTSAIGFEGYENRLEISFFEAGIFS 28
>DCAM_TOBAC (O04009) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 361 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/27 (70%), Positives = 22/27 (81%) Frame = +3 Query: 462 AAPTSAIGFEGYEKRLEITFNEASIFA 542 A P SAIGFEG+EKRLEI+F E +FA Sbjct: 4 ALPVSAIGFEGFEKRLEISFFEPGLFA 30
>DCAM_SOLTU (Q04694) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) (Induced stolen tip protein TUB13) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 360 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/28 (67%), Positives = 22/28 (78%) Frame = +3 Query: 459 MAAPTSAIGFEGYEKRLEITFNEASIFA 542 M P SAIGFEG+EKRLEI+F E +FA Sbjct: 3 MDLPVSAIGFEGFEKRLEISFVEPGLFA 30
>DCAM1_ARATH (Q96286) S-adenosylmethionine decarboxylase proenzyme 1 (EC| 4.1.1.50) (AdoMetDC 1) (SamDC 1) [Contains: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain] Length = 366 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/22 (86%), Positives = 20/22 (90%) Frame = +3 Query: 474 SAIGFEGYEKRLEITFNEASIF 539 SAIGFEGYEKRLE+TF E SIF Sbjct: 4 SAIGFEGYEKRLEVTFFEPSIF 25
>DCAM_DAUCA (Q9AXE3) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 361 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/28 (67%), Positives = 23/28 (82%) Frame = +3 Query: 459 MAAPTSAIGFEGYEKRLEITFNEASIFA 542 M++ SAIGFEG+EKRLEI+F E S FA Sbjct: 1 MSSEVSAIGFEGFEKRLEISFFEPSFFA 28
>DCAM_SPIOL (P46255) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 363 Score = 40.0 bits (92), Expect = 0.004 Identities = 19/22 (86%), Positives = 20/22 (90%) Frame = +3 Query: 474 SAIGFEGYEKRLEITFNEASIF 539 SAIGFEG+EKRLEITF E SIF Sbjct: 4 SAIGFEGFEKRLEITFFEPSIF 25
>DCAM_DATST (Q96555) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/28 (64%), Positives = 22/28 (78%) Frame = +3 Query: 459 MAAPTSAIGFEGYEKRLEITFNEASIFA 542 M P SAIGFEG+EKRLEI+F E +F+ Sbjct: 3 MDLPVSAIGFEGFEKRLEISFVEPGLFS 30
>DCAM2_BRAJU (O49972) S-adenosylmethionine decarboxylase proenzyme 2 (EC| 4.1.1.50) (AdoMetDC 2) (SamDC 2) [Contains: S-adenosylmethionine decarboxylase 2 alpha chain; S-adenosylmethionine decarboxylase 2 beta chain] Length = 369 Score = 38.9 bits (89), Expect = 0.009 Identities = 17/22 (77%), Positives = 20/22 (90%) Frame = +3 Query: 474 SAIGFEGYEKRLEITFNEASIF 539 SAIGFEGYEKRLE++F E S+F Sbjct: 4 SAIGFEGYEKRLEVSFFEPSLF 25
>DCAM2_ARATH (Q9S7T9) S-adenosylmethionine decarboxylase proenzyme 2 (EC| 4.1.1.50) (AdoMetDC 2) (SamDC 2) [Contains: S-adenosylmethionine decarboxylase 2 alpha chain; S-adenosylmethionine decarboxylase 2 beta chain] Length = 362 Score = 38.9 bits (89), Expect = 0.009 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = +3 Query: 474 SAIGFEGYEKRLEITFNEASIF 539 SAIGFEGYEKRLE+TF E +F Sbjct: 4 SAIGFEGYEKRLEVTFFEPGLF 25
>DCAM3_BRAJU (Q9SDM8) S-adenosylmethionine decarboxylase proenzyme 3 (EC| 4.1.1.50) (AdoMetDC 3) (SamDC 3) [Contains: S-adenosylmethionine decarboxylase 3 alpha chain; S-adenosylmethionine decarboxylase 3 beta chain] Length = 367 Score = 38.1 bits (87), Expect = 0.016 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = +3 Query: 474 SAIGFEGYEKRLEITFNEASIF 539 SAIGFEGYEKRLE++F E S F Sbjct: 4 SAIGFEGYEKRLEVSFFEPSFF 25
>DCAM2_DIACA (Q39677) S-adenosylmethionine decarboxylase proenzyme 2 (EC| 4.1.1.50) (AdoMetDC 2) (SamDC 2) [Contains: S-adenosylmethionine decarboxylase 2 alpha chain; S-adenosylmethionine decarboxylase 2 beta chain] Length = 377 Score = 37.0 bits (84), Expect = 0.036 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = +3 Query: 474 SAIGFEGYEKRLEITFNEASIF 539 SAIGFEG+EKRLEI+F E IF Sbjct: 19 SAIGFEGFEKRLEISFFEPGIF 40
>DCAM1_DIACA (Q39676) S-adenosylmethionine decarboxylase proenzyme 1 (EC| 4.1.1.50) (AdoMetDC 1) (SamDC 1) [Contains: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain] Length = 381 Score = 37.0 bits (84), Expect = 0.036 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = +3 Query: 474 SAIGFEGYEKRLEITFNEASIF 539 SAIGFEG+EKRLEI+F E IF Sbjct: 28 SAIGFEGFEKRLEISFFEPGIF 49
>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 37.0 bits (84), Expect = 0.036 Identities = 15/23 (65%), Positives = 21/23 (91%) Frame = +3 Query: 474 SAIGFEGYEKRLEITFNEASIFA 542 SAIGFEG+EKRLEI+F++ +F+ Sbjct: 4 SAIGFEGFEKRLEISFSDPGLFS 26
>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 37.0 bits (84), Expect = 0.036 Identities = 15/23 (65%), Positives = 21/23 (91%) Frame = +3 Query: 474 SAIGFEGYEKRLEITFNEASIFA 542 SAIGFEG+EKRLEI+F++ +F+ Sbjct: 4 SAIGFEGFEKRLEISFSDPGLFS 26
>DCAM_HELAN (O65354) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 361 Score = 34.7 bits (78), Expect = 0.18 Identities = 15/17 (88%), Positives = 17/17 (100%) Frame = +3 Query: 471 TSAIGFEGYEKRLEITF 521 TSAIGFEG+EKRLEI+F Sbjct: 2 TSAIGFEGFEKRLEISF 18
>DCAM1_BRAJU (Q42613) S-adenosylmethionine decarboxylase proenzyme 1 (EC| 4.1.1.50) (AdoMetDC 1) (SamDC 1) [Contains: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain] Length = 368 Score = 32.3 bits (72), Expect = 0.88 Identities = 14/22 (63%), Positives = 18/22 (81%) Frame = +3 Query: 474 SAIGFEGYEKRLEITFNEASIF 539 SAIGFEG +RLE++F E S+F Sbjct: 4 SAIGFEGLRERLEVSFFEPSLF 25
>MOAC_STAS1 (Q49ZJ2) Molybdenum cofactor biosynthesis protein C| Length = 162 Score = 32.0 bits (71), Expect = 1.1 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = +3 Query: 156 AKSLAVVVP*CTKLPSATALKTFDQLEAQRSFLLHIQT 269 AK+ A ++P C +LP TFD E ++S+ L+IQT Sbjct: 66 AKNTADIIPMCHQLPLTGIDVTFDWQENEQSYTLNIQT 103
>PLSI_HUMAN (Q14651) Plastin-1 (I-plastin) (Intestine-specific plastin)| Length = 629 Score = 31.6 bits (70), Expect = 1.5 Identities = 20/62 (32%), Positives = 32/62 (51%) Frame = -3 Query: 401 NWSIIVKQQAREIGGRKESE*NCIKILNYGKGKAKNDIRMASSRSLNMQQKTSLRLQLVE 222 NWS + K +GG + NC + GK KAK + + + LN ++ ++L L LV Sbjct: 439 NWSHVNKPPYPALGGNMKKIENCNYAVELGKNKAKFSLVGIAGQDLN-ERNSTLTLALVW 497 Query: 221 RL 216 +L Sbjct: 498 QL 499
>NUMA1_HUMAN (Q14980) Nuclear mitotic apparatus protein 1 (NuMA protein) (SP-H| antigen) Length = 2115 Score = 31.6 bits (70), Expect = 1.5 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -3 Query: 452 SLSQKAEQRGTEGERLENWSIIVKQQAREIGGRKESE*NCIKILNYGKGKAKNDIRM--A 279 ++ ++AEQ G E ERL + + Q +E G++E E + L +G+A+ D+ + A Sbjct: 969 AMEREAEQMGNELERLRAALMESQGQQQEERGQQERE---VARLTQERGRAQADLALEKA 1025 Query: 278 SSRSLNMQQKTSLRLQLVE 222 + L M+ + +L Q VE Sbjct: 1026 ARAELEMRLQNALNEQRVE 1044
>ARGC2_DEIRA (Q9RY72) N-acetyl-gamma-glutamyl-phosphate reductase 2 (EC| 1.2.1.38) (AGPR 2) (N-acetyl-glutamate semialdehyde dehydrogenase 2) (NAGSA dehydrogenase 2) Length = 306 Score = 30.0 bits (66), Expect = 4.4 Identities = 14/21 (66%), Positives = 14/21 (66%) Frame = +3 Query: 246 SFLLHIQTARRSHPDIVFGFP 308 S LL TA R HPD VFGFP Sbjct: 76 SRLLDASTAHRIHPDWVFGFP 96
>RS10_CHLPN (Q9Z803) 30S ribosomal protein S10| Length = 105 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +3 Query: 213 LKTFDQLEAQRSFLLHIQTARRSHPDIVFGFPLPVV*DFYAIL 341 LK FDQ + RS ++TA+R+ +V PLP + Y +L Sbjct: 12 LKGFDQGQLDRSTADIVETAKRTGARVVGPIPLPTKREVYTVL 54
>FETP_PSEPK (Q88R49) Probable Fe(2+) trafficking protein| Length = 90 Score = 29.3 bits (64), Expect = 7.5 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Frame = -2 Query: 393 DYREAASQRDW--WEKRVRIKLH-KNPKLREGESQKRYQ---DGFFAQFEYAAENFFAPP 232 D E SQ+ W W+K + ++ K + E +K Q D FFA EYA + PP Sbjct: 29 DIFEHISQKAWADWQKHQTMLINEKRLNMMNAEDRKFLQAEMDKFFAGEEYAQAEGYVPP 88 Query: 231 A 229 A Sbjct: 89 A 89
>REN3A_HUMAN (Q9H1J1) Regulator of nonsense transcripts 3A (Nonsense mRNA| reducing factor 3A) (Up-frameshift suppressor 3 homolog A) (hUpf3) Length = 476 Score = 29.3 bits (64), Expect = 7.5 Identities = 21/60 (35%), Positives = 27/60 (45%) Frame = -2 Query: 489 QTRSQRSGRPLLQFESESRAERNRGRETRELVDYREAASQRDWWEKRVRIKLHKNPKLRE 310 + R +R R L + R E R R E +E Q+ EK VRIKL K P+ E Sbjct: 234 EKREERRRRELEK--KRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGE 291
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 28.9 bits (63), Expect = 9.7 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = -2 Query: 444 SESRAERNRGRETRELVDYREAASQRDWWEKRVRIK-LHKNPKLREGESQKRYQ 286 S+S+ ++ GRE R+++ + + QR+ +R R + + + + RE E ++R Q Sbjct: 638 SKSQDRKSEGREKRDILSFDKIKEQRERERQRQREREIRETERRREREQREREQ 691
>RS10_CHLTR (P0A4A1) 30S ribosomal protein S10| Length = 105 Score = 28.9 bits (63), Expect = 9.7 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +3 Query: 213 LKTFDQLEAQRSFLLHIQTARRSHPDIVFGFPLPVV*DFYAIL 341 LK FDQ + +S ++TA+R+ +V PLP + Y +L Sbjct: 12 LKGFDQGQLDQSTANIVETAKRTGARVVGPIPLPTKREVYTVL 54
>RS10_CHLMU (P0A4A2) 30S ribosomal protein S10| Length = 105 Score = 28.9 bits (63), Expect = 9.7 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +3 Query: 213 LKTFDQLEAQRSFLLHIQTARRSHPDIVFGFPLPVV*DFYAIL 341 LK FDQ + +S ++TA+R+ +V PLP + Y +L Sbjct: 12 LKGFDQGQLDQSTANIVETAKRTGARVVGPIPLPTKREVYTVL 54
>ATG9_YEAST (Q12142) Autophagy-related protein 9 (Cytoplasm to vacuole| targeting protein 7) Length = 997 Score = 28.9 bits (63), Expect = 9.7 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 155 HPLTPLEHSLRVPGKNWYGNPFPSAPTCSGSDLKN 51 H ++P +S R PGKNW N +G D+KN Sbjct: 896 HNISPAIYSTRNPGKNWDNNN-------NGDDIKN 923
>MYH9_CHICK (P14105) Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle| myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) Length = 1959 Score = 28.9 bits (63), Expect = 9.7 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 6/80 (7%) Frame = -3 Query: 452 SLSQKAEQRGTEGERLENWSIIVKQQAREIGGRKESE*NCIKILNYGKGKAKNDIRMASS 273 +L ++ E+ LE +++QQA E + + C++I K K + D+ + Sbjct: 1340 ALKEQLEEEEEAKRNLEKQISVLQQQAVEARKKMDDGLGCLEIAEEAKKKLQKDLESLTQ 1399 Query: 272 R------SLNMQQKTSLRLQ 231 R + + +KT RLQ Sbjct: 1400 RYEEKIAAYDKLEKTKTRLQ 1419
>KHSE_ZYMMO (O69015) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 320 Score = 28.9 bits (63), Expect = 9.7 Identities = 19/66 (28%), Positives = 32/66 (48%) Frame = -2 Query: 450 FESESRAERNRGRETRELVDYREAASQRDWWEKRVRIKLHKNPKLREGESQKRYQDGFFA 271 FE+ ++ E + G E ++ +DY + +D + L + L EG+S K D +FA Sbjct: 158 FEAMNQIEAHMGDEVKKELDYLDKFWPKDLPRSVIHADLFPDNVLFEGDSLKGVIDFYFA 217 Query: 270 QFEYAA 253 E A Sbjct: 218 CTEVRA 223 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,341,617 Number of Sequences: 219361 Number of extensions: 1430085 Number of successful extensions: 3852 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3771 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3851 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)