ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basde03 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 151 bits (382), Expect = 1e-36 Identities = 82/139 (58%), Positives = 96/139 (69%), Gaps = 13/139 (9%) Frame = +3 Query: 33 MAASMITSPIVAPTS-----------LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLT 179 MA S+++S + P+S LPSLSR +SF V SG KKIKVDKPLG+GGG+ Sbjct: 1 MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60 Query: 180 V--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVT 353 + +D++GRK KGVYQFVDKYGANVDGYSPIY EEW+ +GD YAGGTTGLLIWAVT Sbjct: 61 LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120 Query: 354 XXXXXXXXXXXVYNTSALA 410 VYNTSALA Sbjct: 121 LAGLLAGGALLVYNTSALA 139
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 142 bits (359), Expect = 5e-34 Identities = 76/137 (55%), Positives = 91/137 (66%), Gaps = 11/137 (8%) Frame = +3 Query: 33 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV- 182 MA+++++S + PT LPSL+R SSF VV SG KK+K DKP G+ G + + Sbjct: 1 MASTVMSSLSLKPTFTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALR 60 Query: 183 -DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 359 +DA+GRK KGVYQ+VDKYGANVDGYSPIY +EWS SGD Y GGTTGL IWAVT Sbjct: 61 DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLV 120 Query: 360 XXXXXXXXXVYNTSALA 410 VYNTSALA Sbjct: 121 GILAGGALLVYNTSALA 137
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 142 bits (359), Expect = 5e-34 Identities = 76/137 (55%), Positives = 91/137 (66%), Gaps = 11/137 (8%) Frame = +3 Query: 33 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV- 182 MA+++++S + PT LPSL+R SSF VV SG KK+K DKP G+ G + + Sbjct: 1 MASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALR 60 Query: 183 -DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 359 +DA+GRK KGVYQ+VDKYGANVDGYSPIY +EWS SGD Y GGTTGL IWAVT Sbjct: 61 DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLL 120 Query: 360 XXXXXXXXXVYNTSALA 410 VYNTSALA Sbjct: 121 GILAGGALLVYNTSALA 137
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 137 bits (346), Expect = 2e-32 Identities = 70/117 (59%), Positives = 81/117 (69%), Gaps = 2/117 (1%) Frame = +3 Query: 66 APTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVD 239 A LPSL+R SSF V SG KK+K DKP G+ G +++ +DA+GRK KGVYQFVD Sbjct: 19 AVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVD 78 Query: 240 KYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYNTSALA 410 KYGANVDGYSPIY ++WS SGD Y GGTTGL IWAVT V+NTSALA Sbjct: 79 KYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 133 bits (334), Expect = 4e-31 Identities = 71/132 (53%), Positives = 82/132 (62%), Gaps = 2/132 (1%) Frame = +3 Query: 21 SEHTMAASMITSPIVAPTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDA 194 S T+ + T A LPSL+R SF +V SG KKIK DKP G+ G + + +DA Sbjct: 8 SSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDA 67 Query: 195 NGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXX 374 +GRK GVY++VDKYGANVDGYSPIY EWS SGD Y GG TGL IWAVT Sbjct: 68 SGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAG 127 Query: 375 XXXXVYNTSALA 410 VYNTSALA Sbjct: 128 GALLVYNTSALA 139
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 132 bits (331), Expect = 9e-31 Identities = 72/133 (54%), Positives = 85/133 (63%), Gaps = 3/133 (2%) Frame = +3 Query: 21 SEHTMAASMITSPIVAPTSLPSLSRRG-SSFAVVCSGGKKIKVDKPLGLGGGLTV--DID 191 S T+ + T ++ LPSL+R SSF +V SG KKIK DKP G+ G + + +D Sbjct: 8 SSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVD 67 Query: 192 ANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXX 371 A+GRK GVY+FVDKYGANVDGYSPIY +EWS SGD Y GG TGL IWAVT Sbjct: 68 ASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILA 127 Query: 372 XXXXXVYNTSALA 410 VYNTSALA Sbjct: 128 GGALLVYNTSALA 140
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 123 bits (309), Expect = 3e-28 Identities = 67/137 (48%), Positives = 81/137 (59%), Gaps = 11/137 (8%) Frame = +3 Query: 33 MAASMITSPIVAPTSLPSLSRRG---------SSFAVVCSGGKKIKVDKPLGLGGGLTVD 185 M+A ++ S + P+S P L R S +V KK++ +P G GGG+ Sbjct: 1 MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFK 60 Query: 186 --IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 359 +DA+GR KGVYQF DKYGANVDGYSPIYTPEEWS SGD Y GG TGL +WAVT Sbjct: 61 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLA 120 Query: 360 XXXXXXXXXVYNTSALA 410 VY+TSALA Sbjct: 121 GILLGGALLVYSTSALA 137
>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)| Length = 24 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = +3 Query: 123 SGGKKIKVDKPLGLGGGLTVDIDA 194 SGGKKIKVDKPLGLGGGLTVDIDA Sbjct: 1 SGGKKIKVDKPLGLGGGLTVDIDA 24
>TYPH_IDILO (Q5QXT8) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 446 Score = 32.7 bits (73), Expect = 0.75 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 5/79 (6%) Frame = +3 Query: 3 HEGESSSEHTMAASMITSPIVAPTS-----LPSLSRRGSSFAVVCSGGKKIKVDKPLGLG 167 H+ S+ + + + P+ P L ++ R AVVC GG + K D L L Sbjct: 324 HDFLEKSDQYLPQANLRKPLKLPAEYHGLYLSEVNTRELGMAVVCLGGGRRKADDKLDLS 383 Query: 168 GGLTVDIDANGRKVGKKGV 224 G+T DI G KV + V Sbjct: 384 VGMT-DILTVGSKVDSESV 401
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 31.2 bits (69), Expect = 2.2 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -3 Query: 220 PFLPTFLPLASMSTVKPPPS-PRGLSTLIFLPPLQTTAKEEPRRER 86 P+LP P S + PPPS P G T I PL++ AK + ++ Sbjct: 183 PYLPPAQPSPSKPQLPPPPSIPSGNKTAIQQEPLESGAKNKTAEQK 228
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.8 bits (68), Expect = 2.9 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Frame = -3 Query: 262 PSTLAPYLSTNW*TPF-------LPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 113 P T P +T TP PT P+ + +TV P P+P G T P TT Sbjct: 1895 PPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1951 Score = 30.4 bits (67), Expect = 3.7 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = -3 Query: 262 PSTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 113 P+T+ + N P PT P+ + +TV P P+P G T P TT Sbjct: 1882 PTTMTTTTTEN---PTPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1928
>KNH1_CANGA (O74684) Cell wall synthesis protein KNH1 precursor| Length = 265 Score = 30.0 bits (66), Expect = 4.9 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Frame = +3 Query: 117 VCSGGK-KIKVDKPLGLGGGL-TVDIDAN-GRKVGKKGVYQFVDKYGANVDGYSPIYTP 284 +CSG KI+ K +G + T D +A + VG G Y +V Y A DGY+ Y+P Sbjct: 59 LCSGPNYKIEAFKVIGKLSDIGTTDFEAEVSQSVGANGYY-YVQIYAATTDGYTIHYSP 116
>POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 30.0 bits (66), Expect = 4.9 Identities = 20/56 (35%), Positives = 25/56 (44%) Frame = -3 Query: 169 PPSPRGLSTLIFLPPLQTTAKEEPRRERDGRLVGATIGEVIMEAAIVCSLLLSPSC 2 PP+ G + LPP T PRR R L + +GE + AI L PSC Sbjct: 2307 PPTVSGCA----LPPRVTAPTPPPRRRRALVLSQSNVGEALQALAIKSFGQLPPSC 2358
>YHU3_YEAST (P38844) Protein YHR143W precursor| Length = 325 Score = 30.0 bits (66), Expect = 4.9 Identities = 17/35 (48%), Positives = 20/35 (57%) Frame = +3 Query: 15 SSSEHTMAASMITSPIVAPTSLPSLSRRGSSFAVV 119 SSS T ++S TS AP SL S S SSFA + Sbjct: 174 SSSSETSSSSFSTSSSSAPLSLTSSSSSSSSFATI 208
>DMI1L_ORYSA (Q75LD5) Putative ion channel DMI1-like, chloroplast precursor| Length = 893 Score = 29.3 bits (64), Expect = 8.3 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = -3 Query: 175 KPPPSPRGLSTLIFLPPLQ--------TTAKEEPRRERDGRLVGATIGEV 50 +PPP+PR S PP Q TT PRR RD R G G+V Sbjct: 53 RPPPTPRSRSRSPLPPPEQQKQQQPPPTTPPPAPRR-RDPRYAGVRRGDV 101
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 29.3 bits (64), Expect = 8.3 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 199 PLASMSTVKPPPSPRGLSTLIFLPPLQTTAKEEPRRERDG 80 P+ T KPP P G + PP Q T E+P E+ G Sbjct: 352 PVQPPGTTKPPAQPLGPAK----PPAQQTGSEKPSSEQPG 387
>VAP1_STRPU (Q06155) Vesicle-associated protein (VAP-1) (Fragment)| Length = 433 Score = 29.3 bits (64), Expect = 8.3 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +3 Query: 123 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 272 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 211 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 260 Score = 29.3 bits (64), Expect = 8.3 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +3 Query: 123 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 272 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 104 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 153 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,400,415 Number of Sequences: 219361 Number of extensions: 1021916 Number of successful extensions: 3900 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3636 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3885 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
