ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basde03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloropla... 151 1e-36
2PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloropla... 142 5e-34
3PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloropla... 142 5e-34
4PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloropla... 137 2e-32
5PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloropla... 133 4e-31
6PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloropla... 132 9e-31
7PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloropla... 123 3e-28
8PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment) 52 2e-06
9TYPH_IDILO (Q5QXT8) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase) 33 0.75
10YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear pro... 31 2.2
11MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2) 31 2.9
12KNH1_CANGA (O74684) Cell wall synthesis protein KNH1 precursor 30 4.9
13POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p... 30 4.9
14YHU3_YEAST (P38844) Protein YHR143W precursor 30 4.9
15DMI1L_ORYSA (Q75LD5) Putative ion channel DMI1-like, chloroplast... 29 8.3
16PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin) 29 8.3
17VAP1_STRPU (Q06155) Vesicle-associated protein (VAP-1) (Fragment) 29 8.3

>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  151 bits (382), Expect = 1e-36
 Identities = 82/139 (58%), Positives = 96/139 (69%), Gaps = 13/139 (9%)
 Frame = +3

Query: 33  MAASMITSPIVAPTS-----------LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLT 179
           MA S+++S  + P+S           LPSLSR  +SF V  SG KKIKVDKPLG+GGG+ 
Sbjct: 1   MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60

Query: 180 V--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVT 353
           +   +D++GRK   KGVYQFVDKYGANVDGYSPIY  EEW+ +GD YAGGTTGLLIWAVT
Sbjct: 61  LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120

Query: 354 XXXXXXXXXXXVYNTSALA 410
                      VYNTSALA
Sbjct: 121 LAGLLAGGALLVYNTSALA 139



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>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score =  142 bits (359), Expect = 5e-34
 Identities = 76/137 (55%), Positives = 91/137 (66%), Gaps = 11/137 (8%)
 Frame = +3

Query: 33  MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV- 182
           MA+++++S  + PT          LPSL+R  SSF VV SG KK+K DKP G+ G + + 
Sbjct: 1   MASTVMSSLSLKPTFTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALR 60

Query: 183 -DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 359
             +DA+GRK   KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y GGTTGL IWAVT  
Sbjct: 61  DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLV 120

Query: 360 XXXXXXXXXVYNTSALA 410
                    VYNTSALA
Sbjct: 121 GILAGGALLVYNTSALA 137



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>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  142 bits (359), Expect = 5e-34
 Identities = 76/137 (55%), Positives = 91/137 (66%), Gaps = 11/137 (8%)
 Frame = +3

Query: 33  MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV- 182
           MA+++++S  + PT          LPSL+R  SSF VV SG KK+K DKP G+ G + + 
Sbjct: 1   MASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALR 60

Query: 183 -DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 359
             +DA+GRK   KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y GGTTGL IWAVT  
Sbjct: 61  DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLL 120

Query: 360 XXXXXXXXXVYNTSALA 410
                    VYNTSALA
Sbjct: 121 GILAGGALLVYNTSALA 137



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>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score =  137 bits (346), Expect = 2e-32
 Identities = 70/117 (59%), Positives = 81/117 (69%), Gaps = 2/117 (1%)
 Frame = +3

Query: 66  APTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVD 239
           A   LPSL+R  SSF V  SG KK+K DKP G+ G +++   +DA+GRK   KGVYQFVD
Sbjct: 19  AVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVD 78

Query: 240 KYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYNTSALA 410
           KYGANVDGYSPIY  ++WS SGD Y GGTTGL IWAVT           V+NTSALA
Sbjct: 79  KYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135



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>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  133 bits (334), Expect = 4e-31
 Identities = 71/132 (53%), Positives = 82/132 (62%), Gaps = 2/132 (1%)
 Frame = +3

Query: 21  SEHTMAASMITSPIVAPTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDA 194
           S  T+  +  T    A   LPSL+R   SF +V SG KKIK DKP G+ G + +   +DA
Sbjct: 8   SSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDA 67

Query: 195 NGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXX 374
           +GRK    GVY++VDKYGANVDGYSPIY   EWS SGD Y GG TGL IWAVT       
Sbjct: 68  SGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAG 127

Query: 375 XXXXVYNTSALA 410
               VYNTSALA
Sbjct: 128 GALLVYNTSALA 139



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>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score =  132 bits (331), Expect = 9e-31
 Identities = 72/133 (54%), Positives = 85/133 (63%), Gaps = 3/133 (2%)
 Frame = +3

Query: 21  SEHTMAASMITSPIVAPTSLPSLSRRG-SSFAVVCSGGKKIKVDKPLGLGGGLTV--DID 191
           S  T+  +  T   ++   LPSL+R   SSF +V SG KKIK DKP G+ G + +   +D
Sbjct: 8   SSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVD 67

Query: 192 ANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXX 371
           A+GRK    GVY+FVDKYGANVDGYSPIY  +EWS SGD Y GG TGL IWAVT      
Sbjct: 68  ASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILA 127

Query: 372 XXXXXVYNTSALA 410
                VYNTSALA
Sbjct: 128 GGALLVYNTSALA 140



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>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  123 bits (309), Expect = 3e-28
 Identities = 67/137 (48%), Positives = 81/137 (59%), Gaps = 11/137 (8%)
 Frame = +3

Query: 33  MAASMITSPIVAPTSLPSLSRRG---------SSFAVVCSGGKKIKVDKPLGLGGGLTVD 185
           M+A ++ S  + P+S P L R            S  +V    KK++  +P G GGG+   
Sbjct: 1   MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFK 60

Query: 186 --IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 359
             +DA+GR    KGVYQF DKYGANVDGYSPIYTPEEWS SGD Y GG TGL +WAVT  
Sbjct: 61  EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLA 120

Query: 360 XXXXXXXXXVYNTSALA 410
                    VY+TSALA
Sbjct: 121 GILLGGALLVYSTSALA 137



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>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)|
          Length = 24

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +3

Query: 123 SGGKKIKVDKPLGLGGGLTVDIDA 194
           SGGKKIKVDKPLGLGGGLTVDIDA
Sbjct: 1   SGGKKIKVDKPLGLGGGLTVDIDA 24



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>TYPH_IDILO (Q5QXT8) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 446

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = +3

Query: 3   HEGESSSEHTMAASMITSPIVAPTS-----LPSLSRRGSSFAVVCSGGKKIKVDKPLGLG 167
           H+    S+  +  + +  P+  P       L  ++ R    AVVC GG + K D  L L 
Sbjct: 324 HDFLEKSDQYLPQANLRKPLKLPAEYHGLYLSEVNTRELGMAVVCLGGGRRKADDKLDLS 383

Query: 168 GGLTVDIDANGRKVGKKGV 224
            G+T DI   G KV  + V
Sbjct: 384 VGMT-DILTVGSKVDSESV 401



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>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 220 PFLPTFLPLASMSTVKPPPS-PRGLSTLIFLPPLQTTAKEEPRRER 86
           P+LP   P  S   + PPPS P G  T I   PL++ AK +   ++
Sbjct: 183 PYLPPAQPSPSKPQLPPPPSIPSGNKTAIQQEPLESGAKNKTAEQK 228



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>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
 Frame = -3

Query: 262  PSTLAPYLSTNW*TPF-------LPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 113
            P T  P  +T   TP         PT  P+ + +TV P P+P G  T    P   TT
Sbjct: 1895 PPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1951



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 262  PSTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 113
            P+T+    + N   P  PT  P+ + +TV P P+P G  T    P   TT
Sbjct: 1882 PTTMTTTTTEN---PTPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1928



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>KNH1_CANGA (O74684) Cell wall synthesis protein KNH1 precursor|
          Length = 265

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 117 VCSGGK-KIKVDKPLGLGGGL-TVDIDAN-GRKVGKKGVYQFVDKYGANVDGYSPIYTP 284
           +CSG   KI+  K +G    + T D +A   + VG  G Y +V  Y A  DGY+  Y+P
Sbjct: 59  LCSGPNYKIEAFKVIGKLSDIGTTDFEAEVSQSVGANGYY-YVQIYAATTDGYTIHYSP 116



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>POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = -3

Query: 169  PPSPRGLSTLIFLPPLQTTAKEEPRRERDGRLVGATIGEVIMEAAIVCSLLLSPSC 2
            PP+  G +    LPP  T     PRR R   L  + +GE +   AI     L PSC
Sbjct: 2307 PPTVSGCA----LPPRVTAPTPPPRRRRALVLSQSNVGEALQALAIKSFGQLPPSC 2358



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>YHU3_YEAST (P38844) Protein YHR143W precursor|
          Length = 325

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +3

Query: 15  SSSEHTMAASMITSPIVAPTSLPSLSRRGSSFAVV 119
           SSS  T ++S  TS   AP SL S S   SSFA +
Sbjct: 174 SSSSETSSSSFSTSSSSAPLSLTSSSSSSSSFATI 208



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>DMI1L_ORYSA (Q75LD5) Putative ion channel DMI1-like, chloroplast precursor|
          Length = 893

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
 Frame = -3

Query: 175 KPPPSPRGLSTLIFLPPLQ--------TTAKEEPRRERDGRLVGATIGEV 50
           +PPP+PR  S     PP Q        TT    PRR RD R  G   G+V
Sbjct: 53  RPPPTPRSRSRSPLPPPEQQKQQQPPPTTPPPAPRR-RDPRYAGVRRGDV 101



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>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)|
          Length = 5183

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 199 PLASMSTVKPPPSPRGLSTLIFLPPLQTTAKEEPRRERDG 80
           P+    T KPP  P G +     PP Q T  E+P  E+ G
Sbjct: 352 PVQPPGTTKPPAQPLGPAK----PPAQQTGSEKPSSEQPG 387



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>VAP1_STRPU (Q06155) Vesicle-associated protein (VAP-1) (Fragment)|
          Length = 433

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 123 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 272
           SGG  + V   +G  LGGGL  DIDANG  V  KG     D  G ++D   P
Sbjct: 211 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 260



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 123 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 272
           SGG  + V   +G  LGGGL  DIDANG  V  KG     D  G ++D   P
Sbjct: 104 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,400,415
Number of Sequences: 219361
Number of extensions: 1021916
Number of successful extensions: 3900
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3885
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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