Clone Name | basde18 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | ZN678_HUMAN (Q5SXM1) Zinc finger protein 678 | 36 | 0.053 | 2 | ZN540_PONPY (Q5R5S6) Zinc finger protein 540 | 33 | 0.45 | 3 | ZN540_HUMAN (Q8NDQ6) Zinc finger protein 540 | 33 | 0.45 | 4 | ZN588_HUMAN (Q9UII5) Zinc finger protein 588 (Zinc finger protei... | 30 | 2.9 | 5 | MDHP_MEDSA (O48902) Malate dehydrogenase [NADP], chloroplast pre... | 30 | 5.0 |
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>ZN678_HUMAN (Q5SXM1) Zinc finger protein 678| Length = 525 Score = 36.2 bits (82), Expect = 0.053 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 18/146 (12%) Frame = +3 Query: 93 FPCHGHLHSGSRYGQLPSQRRLHSR---LGCKQLPSLLGPHSRVRCEQLPRHRRLHSRVR 263 +PC + +++ L +R+H+ CK+ S L +H+R+H+ + Sbjct: 209 YPCEECGKAFTQFSNLTQHKRIHTGEKPYKCKECCKAFNKFSN-----LTQHKRIHTGEK 263 Query: 264 -------------CEQLPRHRRLHSLVRCGQLPXXXXXXXXXXXN--QLPRHSHLHI*VR 398 C L RHRR+H+ G+ P L RH +H + Sbjct: 264 PYKCEECGNVFNECSHLTRHRRIHT----GEKPYKCEECGKAFTQFASLTRHKRIHTGEK 319 Query: 399 CEQLPSYRRLHSRVRCNQLPNHRRLH 476 Q + + RC+ L +H+R+H Sbjct: 320 PYQCEECGKTFN--RCSHLSSHKRIH 343 Score = 31.6 bits (70), Expect = 1.3 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 18/105 (17%) Frame = +3 Query: 216 RCEQLPRHRRLHS---RVRCEQ----------LPRHRRLHSLVRCGQLPX--XXXXXXXX 350 RC L H+R+H+ +CE+ L +H+R+H+ G+ P Sbjct: 332 RCSHLSSHKRIHTGEKPYKCEECGRTFTQFSNLTQHKRIHT----GEKPYKCKECGKAFN 387 Query: 351 XXNQLPRHSHLHI*V---RCEQLPSYRRLHSRVRCNQLPNHRRLH 476 + L +H +H V +CE+ + +C+ L +H+R+H Sbjct: 388 KFSSLTQHRRIHTGVKPYKCEECGKVFK-----QCSHLTSHKRIH 427
>ZN540_PONPY (Q5R5S6) Zinc finger protein 540| Length = 660 Score = 33.1 bits (74), Expect = 0.45 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 24/104 (23%) Frame = +3 Query: 219 CEQLPRHRRLHSRVR---CEQ----------LPRHRRLHSLVRCGQLPX--XXXXXXXXX 353 C QL RH+++H+ V+ C++ L HRR H+ G+ P Sbjct: 339 CGQLTRHQKIHTGVKPYECKECGKTFRLSFYLTEHRRTHA----GKKPYECKECGKSFNV 394 Query: 354 XNQLPRHSHLHI*VR------CEQLPSYR---RLHSRVRCNQLP 458 QL RH +H ++ CE+ SY R+HSR+ + P Sbjct: 395 RGQLNRHKAIHTGIKPFACKVCEKAFSYSGDLRVHSRIHTGEKP 438
>ZN540_HUMAN (Q8NDQ6) Zinc finger protein 540| Length = 660 Score = 33.1 bits (74), Expect = 0.45 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 24/104 (23%) Frame = +3 Query: 219 CEQLPRHRRLHSRVR---CEQ----------LPRHRRLHSLVRCGQLPX--XXXXXXXXX 353 C QL RH+++H+ V+ C++ L HRR H+ G+ P Sbjct: 339 CGQLTRHQKIHTGVKPYECKECGKTFRLSFYLTEHRRTHA----GKKPYECKECGKSFNV 394 Query: 354 XNQLPRHSHLHI*VR------CEQLPSYR---RLHSRVRCNQLP 458 QL RH +H ++ CE+ SY R+HSR+ + P Sbjct: 395 RGQLNRHKTIHTGIKPFACKVCEKAFSYSGDLRVHSRIHTGEKP 438
>ZN588_HUMAN (Q9UII5) Zinc finger protein 588 (Zinc finger protein ZFD25)| Length = 783 Score = 30.4 bits (67), Expect = 2.9 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 15/113 (13%) Frame = +3 Query: 93 FPCHGHLHSGSRYGQLPSQRRLHSRLGCKQLPSLLGPHSRVRCEQLPRHRRLHSRV---R 263 F C+ ++ ++ +R H+ G K S QL +HRR+H+RV + Sbjct: 76 FQCNKYVKVFDKFSNSNRYKRRHT--GNKHFKCKECSKSFCVLSQLTQHRRIHTRVNSYK 133 Query: 264 CEQ----------LPRHRRLHSLVRCGQLPX--XXXXXXXXXXNQLPRHSHLH 386 CE+ L +H+R+H+ G+ P +QL RH +H Sbjct: 134 CEECGKAFNWFSTLTKHKRIHT----GEKPYKCEECGKAFNQSSQLTRHKIIH 182
>MDHP_MEDSA (O48902) Malate dehydrogenase [NADP], chloroplast precursor (EC| 1.1.1.82) (NADP-MDH) Length = 437 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/51 (27%), Positives = 19/51 (37%) Frame = +3 Query: 309 CGQLPXXXXXXXXXXXNQLPRHSHLHI*VRCEQLPSYRRLHSRVRCNQLPN 461 C + LPRH H C P +R H+R+ C+ PN Sbjct: 10 CSKTQLHSSSQLSFLSRTLPRHHH------CTLAPLHRTQHARISCSVAPN 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.127 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,624,032 Number of Sequences: 219361 Number of extensions: 685057 Number of successful extensions: 2414 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2385 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)