ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basde18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB030708.1| Triticum aestivum gene for AHM1, complete cds Length = 3846 Score = 597 bits (301), Expect = e-167 Identities = 457/509 (89%) Strand = Plus / Plus Query: 2 gccgctgcacctcgcgcaccgatgcaacagccggcggtggagaggaggccgcagccgtcg 61 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1793 gccgctgcacctcgcccaccgatgcaacagccggcggtggagaggaggccgcacccgtcg 1852 Query: 62 ccgcctccacagcagagcccggtatgggcagttcccctgccacggccacctccacagcgg 121 ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct: 1853 ccgcctccacagcagagcccggtatgggcagctccccagccacggccacatccacagcgg 1912 Query: 122 atcccggtacggccagctccccagccaacgccgcctccacagccgactcggctgcaagca 181 ||||||||||||||||||||||||||||||||||||| |||||||| | ||||| |||| Sbjct: 1913 atcccggtacggccagctccccagccaacgccgcctctacagccgagttcgctgcgagca 1972 Query: 182 gctacccagccttctcggcccccacagccgagttcgatgcgagcagctacccagacaccg 241 ||||||||| | | | ||| |||||| |||||||| ||||||||||||||||||||||| Sbjct: 1973 gctacccagacaccgccgcctccacagtcgagttcgctgcgagcagctacccagacaccg 2032 Query: 242 ccgcctccacagccgagttcgctgcgagcagctacccagacaccgccgcctacacagcct 301 |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| Sbjct: 2033 ccgcctccacagccgagttcactgcgagcagctacccagacgccgccgcctccacagccg 2092 Query: 302 agttcgctgcgggcagctacccagacaccgccgcttccacagccgagcccgccgcaacca 361 || ||||| ||||||||||| ||| |||| ||||||||||||||| | |||| || Sbjct: 2093 agccggctgcaaccagctacccagccacagccgtctccacagccgagcccactgcaagca 2152 Query: 362 gctacccaggcacagccacctccacatttgagtccgttgcgagcagctaccaagctaccg 421 |||||| || ||| ||| ||||||| |||||||||| |||||||||||||| |||| Sbjct: 2153 gctaccaagccaccgccgtctccacagccaagtccgttgcaagcagctaccaagccaccg 2212 Query: 422 ccgtctccacagccgagtccgctgcaaccagctacccaaccaccgccgcctccacaaccg 481 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 2213 tcgtctccacagccaagtccgctgcaaccagctacccagccaccgccgcctccacaacct 2272 Query: 482 agcctgctgcaagcagcttcccagccacc 510 || | |||||||||||||||||||||||| Sbjct: 2273 agtccgctgcaagcagcttcccagccacc 2301
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 31 gccggcggtggagaggaggccg 52 |||||||||||||||||||||| Sbjct: 1152028 gccggcggtggagaggaggccg 1152049
>emb|X07653.1|BYDVPAV Barley yellow dwarf virus - PAV genomic RNA Length = 5677 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 140 ccccagccaacgccgcctccacagcc 165 ||||||||||||||| |||||||||| Sbjct: 3512 ccccagccaacgccggctccacagcc 3537
>ref|XM_610695.2| PREDICTED: Bos taurus similar to Proto-oncogene DBL (Proto-oncogene MCF-2) (LOC532185), mRNA Length = 4035 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 482 agcctgctgcaagcagcttcc 502 ||||||||||||||||||||| Sbjct: 616 agcctgctgcaagcagcttcc 636
>emb|AL109630.2|DMBR7A4 Drosophila melanogaster BAC clone BACR7A4 Length = 212370 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 ggccgcagccgtcgccgcctc 68 ||||||||||||||||||||| Sbjct: 72253 ggccgcagccgtcgccgcctc 72273
>emb|CR858078.1| Pongo pygmaeus mRNA; cDNA DKFZp459O1435 (from clone DKFZp459O1435) Length = 2014 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 168 agacaccgccgcttccacagc 148
>gb|BC001853.2| Homo sapiens 5-azacytidine induced 2, mRNA (cDNA clone MGC:4533 IMAGE:3010714), complete cds Length = 1487 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 250 agacaccgccgcttccacagc 230
>gb|BC001139.2| Homo sapiens 5-azacytidine induced 2, mRNA (cDNA clone MGC:2903 IMAGE:3010714), complete cds Length = 1487 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 250 agacaccgccgcttccacagc 230
>emb|CR623051.1| full-length cDNA clone CS0DI070YA05 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1366 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 328 agacaccgccgcttccacagc 308
>dbj|AK123678.1| Homo sapiens cDNA FLJ41684 fis, clone HCASM2006131, moderately similar to Mus musculus AZ2 mRNA Length = 3081 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 1106 agacaccgccgcttccacagc 1086
>emb|CR618873.1| full-length cDNA clone CS0DI040YK15 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2097 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 321 agacaccgccgcttccacagc 301
>emb|CR613279.1| full-length cDNA clone CS0DC001YK16 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 2051 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 263 agacaccgccgcttccacagc 243
>emb|CR598106.1| full-length cDNA clone CS0DA010YN02 of Neuroblastoma of Homo sapiens (human) Length = 1245 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 97 agacaccgccgcttccacagc 77
>gb|AC097726.4| Drosophila melanogaster X BAC RP98-5N14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 146717 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 ggccgcagccgtcgccgcctc 68 ||||||||||||||||||||| Sbjct: 72624 ggccgcagccgtcgccgcctc 72644
>ref|NM_130512.2| Drosophila melanogaster CG11663-RA (CG11663), mRNA Length = 641 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 ggccgcagccgtcgccgcctc 68 ||||||||||||||||||||| Sbjct: 276 ggccgcagccgtcgccgcctc 296
>gb|AC098616.2| Homo sapiens chromosome 3 clone RP11-279I18, complete sequence Length = 159629 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 27123 agacaccgccgcttccacagc 27103
>ref|NM_022461.2| Homo sapiens 5-azacytidine induced 2 (AZI2), mRNA Length = 3113 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 362 agacaccgccgcttccacagc 342
>dbj|AB168685.1| Macaca fascicularis testis cDNA clone: QtsA-14164, similar to human 5-azacytidine induced gene 2 (AZ2), transcript variant1, mRNA, RefSeq: NM_022461.2 Length = 2031 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 160 agacaccgccgcttccacagc 140
>gb|AC153651.4| Mus musculus BAC clone RP24-74B24 from chromosome 7, complete sequence Length = 256298 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 52 gcagccgtcgccgcctccacagcag 76 ||||||||||||||| ||||||||| Sbjct: 8925 gcagccgtcgccgccgccacagcag 8901
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 gccgcagccgtcgccgcctcc 69 ||||||||||||||||||||| Sbjct: 18200008 gccgcagccgtcgccgcctcc 18199988 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 caacgccgcctccacagccg 166 |||||||||||||||||||| Sbjct: 871566 caacgccgcctccacagccg 871547
>gb|AY075167.1| Drosophila melanogaster AT05678 full insert cDNA Length = 644 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 ggccgcagccgtcgccgcctc 68 ||||||||||||||||||||| Sbjct: 268 ggccgcagccgtcgccgcctc 288
>ref|XM_577858.1| PREDICTED: Rattus norvegicus similar to FoxB2 protein (LOC502382), mRNA Length = 2310 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 ccgccgcctccacagccgagt 259 ||||||||||||||||||||| Sbjct: 535 ccgccgcctccacagccgagt 515
>gb|AC011545.4|AC011545 Homo sapiens chromosome 19, cosmid R30477 (LLNL-R_266D1), complete sequence Length = 38611 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 52 gcagccgtcgccgcctccacagcag 76 ||||||||||||||| ||||||||| Sbjct: 5357 gcagccgtcgccgccgccacagcag 5333
>gb|AC093142.2| Homo sapiens chromosome 3 clone RP11-301D8, complete sequence Length = 210592 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 181451 agacaccgccgcttccacagc 181431
>emb|BX648471.1|HSM808619 Homo sapiens mRNA; cDNA DKFZp686E14155 (from clone DKFZp686E14155) Length = 3143 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 69 agacaccgccgcttccacagc 49
>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0434E03 Length = 142414 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 gccgcagccgtcgccgcctcc 69 ||||||||||||||||||||| Sbjct: 22320 gccgcagccgtcgccgcctcc 22300
>dbj|AK025592.1| Homo sapiens cDNA: FLJ21939 fis, clone HEP04507 Length = 2248 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 252 agacaccgccgcttccacagc 232
>gb|AF044918.1|AF044918 Homo sapiens TILP short form (tilp) gene, complete cds Length = 1397 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 375 agacaccgccgcttccacagc 355
>gb|AF044917.1|AF044917 Homo sapiens TILP long form (tilp) gene, complete cds Length = 2318 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 agacaccgccgcttccacagc 344 ||||||||||||||||||||| Sbjct: 375 agacaccgccgcttccacagc 355
>gb|AE003419.2| Drosophila melanogaster chromosome X, section 3 of 74 of the complete sequence Length = 306598 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 ggccgcagccgtcgccgcctc 68 ||||||||||||||||||||| Sbjct: 48951 ggccgcagccgtcgccgcctc 48971
>gb|AC170864.2| Mus musculus BAC clone RP24-576D1 from chromosome 7, complete sequence Length = 208952 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 52 gcagccgtcgccgcctccacagcag 76 ||||||||||||||| ||||||||| Sbjct: 160964 gcagccgtcgccgccgccacagcag 160940
>dbj|D37809.2|STMBCPC Streptomyces hygroscopicus BcpC gene for phosphonopyruvate decarboxylase, complete cds Length = 1380 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 gaggccgcagccgtcgccgcc 66 ||||||||||||||||||||| Sbjct: 233 gaggccgcagccgtcgccgcc 253
>ref|XM_467309.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2007 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 ggccgcagccgtcgccgcctccac 71 |||||| ||||||||||||||||| Sbjct: 30 ggccgccgccgtcgccgcctccac 7
>ref|NM_153748.1| Homo sapiens potassium voltage-gated channel, Shaw-related subfamily, member 2 (KCNC2), transcript variant 3, mRNA Length = 3345 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gcagccgtcgccgcctccac 71 |||||||||||||||||||| Sbjct: 706 gcagccgtcgccgcctccac 725
>ref|NM_139136.2| Homo sapiens potassium voltage-gated channel, Shaw-related subfamily, member 2 (KCNC2), transcript variant 1, mRNA Length = 3510 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gcagccgtcgccgcctccac 71 |||||||||||||||||||| Sbjct: 706 gcagccgtcgccgcctccac 725
>ref|NM_139137.2| Homo sapiens potassium voltage-gated channel, Shaw-related subfamily, member 2 (KCNC2), transcript variant 2, mRNA Length = 2468 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gcagccgtcgccgcctccac 71 |||||||||||||||||||| Sbjct: 706 gcagccgtcgccgcctccac 725
>gb|AC099604.4| Mus musculus chromosome 1, clone RP23-335B22, complete sequence Length = 197338 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 aagcagctacccagccttctcggc 200 ||||||||||||||| |||||||| Sbjct: 115769 aagcagctacccagcattctcggc 115792
>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end Length = 247462 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 caccgccgcctccacagccg 256 |||||||||||||||||||| Sbjct: 62121 caccgccgcctccacagccg 62102
>ref|XM_745549.1| Aspergillus fumigatus Af293 DNA excision repair protein Rad2 (Afu6g07500) partial mRNA Length = 3393 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 ctgcaagcagcttcccagcc 507 |||||||||||||||||||| Sbjct: 334 ctgcaagcagcttcccagcc 315
>emb|CR684401.2|CNS0FR19 Tetraodon nigroviridis full-length cDNA Length = 1315 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 tgggcagttcccctgccacggcca 109 ||||||||||||| |||||||||| Sbjct: 233 tgggcagttcccccgccacggcca 256
>emb|AL451000.16| Human DNA sequence from clone RP11-223J15 on chromosome 1 Contains a novel gene (MDS2), a eukaryotic translation elongation factor 1 alpha 2 (EEF1A2) pseudogene and the RPL11 gene for ribosomal protein L11, complete sequence Length = 115566 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 49 gccgcagccgtcgccgcctccacagcagagcc 80 ||||| |||| ||||||| ||||||||||||| Sbjct: 32276 gccgccgccgccgccgccgccacagcagagcc 32307
>gb|AY118169.1| Homo sapiens potassium voltage-gated potassium channel subfamily C member 2 (KCNC2) mRNA, complete cds Length = 1917 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gcagccgtcgccgcctccac 71 |||||||||||||||||||| Sbjct: 162 gcagccgtcgccgcctccac 181
>dbj|AK094720.1| Homo sapiens cDNA FLJ37401 fis, clone BRAMY2027717, highly similar to VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.2 Length = 3344 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gcagccgtcgccgcctccac 71 |||||||||||||||||||| Sbjct: 706 gcagccgtcgccgcctccac 725
>gb|AF268896.1|AF268896 Homo sapiens voltage gated potassium channel Kv3.2b mRNA, complete cds Length = 1964 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gcagccgtcgccgcctccac 71 |||||||||||||||||||| Sbjct: 183 gcagccgtcgccgcctccac 202
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ggaggccgcagccgtcgccg 64 |||||||||||||||||||| Sbjct: 1899165 ggaggccgcagccgtcgccg 1899146
>gb|AY243473.1| Homo sapiens Kv3.2d voltage gated potassium channel (KCNC2) mRNA, complete cds; alternatively spliced Length = 2932 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gcagccgtcgccgcctccac 71 |||||||||||||||||||| Sbjct: 183 gcagccgtcgccgcctccac 202
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 ggccgcagccgtcgccgcctccac 71 |||||| ||||||||||||||||| Sbjct: 28787382 ggccgccgccgtcgccgcctccac 28787359
>dbj|AB209994.1| Homo sapiens mRNA for KCNC2 variant protein, partial cds, clone: bh00196 Length = 5223 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gcagccgtcgccgcctccac 71 |||||||||||||||||||| Sbjct: 422 gcagccgtcgccgcctccac 441
>gb|BC093635.1| Homo sapiens potassium voltage-gated channel, Shaw-related subfamily, member 2, transcript variant 3, mRNA (cDNA clone MGC:120670 IMAGE:7939480), complete cds Length = 1798 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gcagccgtcgccgcctccac 71 |||||||||||||||||||| Sbjct: 257 gcagccgtcgccgcctccac 276
>gb|AF268897.2| Homo sapiens voltage gated potassium channel Kv3.2a mRNA, complete cds; alternatively spliced Length = 3028 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gcagccgtcgccgcctccac 71 |||||||||||||||||||| Sbjct: 183 gcagccgtcgccgcctccac 202
>gb|AC091534.7| Homo sapiens 12 BAC RP11-404O18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 185576 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gcagccgtcgccgcctccac 71 |||||||||||||||||||| Sbjct: 108379 gcagccgtcgccgcctccac 108360
>ref|XM_236601.3| PREDICTED: Rattus norvegicus similar to Alpha-1,4-N-acetylglucosaminyltransferase (Alpha4GnT) (predicted) (LOC315951), mRNA Length = 2769 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 agcagctacccagccttctc 197 |||||||||||||||||||| Sbjct: 2044 agcagctacccagccttctc 2063
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 ggccgcagccgtcgccgcctccac 71 |||||| ||||||||||||||||| Sbjct: 103955 ggccgccgccgtcgccgcctccac 103932
>dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470F10 Length = 185294 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 caacgccgcctccacagccg 166 |||||||||||||||||||| Sbjct: 34304 caacgccgcctccacagccg 34285
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0427G12 Length = 185545 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 caacgccgcctccacagccg 166 |||||||||||||||||||| Sbjct: 170786 caacgccgcctccacagccg 170767
>dbj|AK110231.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-162-F04, full insert sequence Length = 3248 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 464 ccgccgcctccacaaccgagcctg 487 ||||| |||||||||||||||||| Sbjct: 2754 ccgcctcctccacaaccgagcctg 2777
>gb|BC111991.1| Homo sapiens potassium voltage-gated channel, Shaw-related subfamily, member 2, transcript variant 3, mRNA (cDNA clone MGC:138196 IMAGE:8327459), complete cds Length = 1794 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gcagccgtcgccgcctccac 71 |||||||||||||||||||| Sbjct: 257 gcagccgtcgccgcctccac 276
>dbj|AP000711.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-51K10, complete sequence Length = 111591 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 gctgcaagcagcttcccagccacc 510 |||||||||||| ||||||||||| Sbjct: 14256 gctgcaagcagcctcccagccacc 14279
>emb|AJ937766.1| Uncultured candidate division WS3 bacterium fosmid clone b1dcf5.1.c12 Length = 38304 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 ccgccgcctccacagccgag 258 |||||||||||||||||||| Sbjct: 4005 ccgccgcctccacagccgag 4024
>gb|AC170257.3| Mus musculus chromosome 1, clone wi1-1711N8, complete sequence Length = 38245 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ccaggcacagccacctccac 386 |||||||||||||||||||| Sbjct: 31011 ccaggcacagccacctccac 31030 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,348,682 Number of Sequences: 3902068 Number of extensions: 3348682 Number of successful extensions: 72710 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72214 Number of HSP's gapped (non-prelim): 465 length of query: 510 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 488 effective length of database: 17,147,199,772 effective search space: 8367833488736 effective search space used: 8367833488736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
