ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basde18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB030708.1| Triticum aestivum gene for AHM1, complete cds 597 e-167
2gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.44
3emb|X07653.1|BYDVPAV Barley yellow dwarf virus - PAV genomic RNA 44 0.44
4ref|XM_610695.2| PREDICTED: Bos taurus similar to Proto-oncogene... 42 1.7
5emb|AL109630.2|DMBR7A4 Drosophila melanogaster BAC clone BACR7A4 42 1.7
6emb|CR858078.1| Pongo pygmaeus mRNA; cDNA DKFZp459O1435 (from cl... 42 1.7
7gb|BC001853.2| Homo sapiens 5-azacytidine induced 2, mRNA (cDNA ... 42 1.7
8gb|BC001139.2| Homo sapiens 5-azacytidine induced 2, mRNA (cDNA ... 42 1.7
9emb|CR623051.1| full-length cDNA clone CS0DI070YA05 of Placenta ... 42 1.7
10dbj|AK123678.1| Homo sapiens cDNA FLJ41684 fis, clone HCASM20061... 42 1.7
11emb|CR618873.1| full-length cDNA clone CS0DI040YK15 of Placenta ... 42 1.7
12emb|CR613279.1| full-length cDNA clone CS0DC001YK16 of Neuroblas... 42 1.7
13emb|CR598106.1| full-length cDNA clone CS0DA010YN02 of Neuroblas... 42 1.7
14gb|AC097726.4| Drosophila melanogaster X BAC RP98-5N14 (Roswell ... 42 1.7
15ref|NM_130512.2| Drosophila melanogaster CG11663-RA (CG11663), mRNA 42 1.7
16gb|AC098616.2| Homo sapiens chromosome 3 clone RP11-279I18, comp... 42 1.7
17ref|NM_022461.2| Homo sapiens 5-azacytidine induced 2 (AZI2), mRNA 42 1.7
18dbj|AB168685.1| Macaca fascicularis testis cDNA clone: QtsA-1416... 42 1.7
19gb|AC153651.4| Mus musculus BAC clone RP24-74B24 from chromosome... 42 1.7
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
21gb|AY075167.1| Drosophila melanogaster AT05678 full insert cDNA 42 1.7
22ref|XM_577858.1| PREDICTED: Rattus norvegicus similar to FoxB2 p... 42 1.7
23gb|AC011545.4|AC011545 Homo sapiens chromosome 19, cosmid R30477... 42 1.7
24gb|AC093142.2| Homo sapiens chromosome 3 clone RP11-301D8, compl... 42 1.7
25emb|BX648471.1|HSM808619 Homo sapiens mRNA; cDNA DKFZp686E14155 ... 42 1.7
26dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
27dbj|AK025592.1| Homo sapiens cDNA: FLJ21939 fis, clone HEP04507 42 1.7
28gb|AF044918.1|AF044918 Homo sapiens TILP short form (tilp) gene,... 42 1.7
29gb|AF044917.1|AF044917 Homo sapiens TILP long form (tilp) gene, ... 42 1.7
30gb|AE003419.2| Drosophila melanogaster chromosome X, section 3 o... 42 1.7
31gb|AC170864.2| Mus musculus BAC clone RP24-576D1 from chromosome... 42 1.7
32dbj|D37809.2|STMBCPC Streptomyces hygroscopicus BcpC gene for ph... 42 1.7
33ref|XM_467309.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.9
34ref|NM_153748.1| Homo sapiens potassium voltage-gated channel, S... 40 6.9
35ref|NM_139136.2| Homo sapiens potassium voltage-gated channel, S... 40 6.9
36ref|NM_139137.2| Homo sapiens potassium voltage-gated channel, S... 40 6.9
37gb|AC099604.4| Mus musculus chromosome 1, clone RP23-335B22, com... 40 6.9
38emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 40 6.9
39ref|XM_745549.1| Aspergillus fumigatus Af293 DNA excision repair... 40 6.9
40emb|CR684401.2|CNS0FR19 Tetraodon nigroviridis full-length cDNA 40 6.9
41emb|AL451000.16| Human DNA sequence from clone RP11-223J15 on ch... 40 6.9
42gb|AY118169.1| Homo sapiens potassium voltage-gated potassium ch... 40 6.9
43dbj|AK094720.1| Homo sapiens cDNA FLJ37401 fis, clone BRAMY20277... 40 6.9
44gb|AF268896.1|AF268896 Homo sapiens voltage gated potassium chan... 40 6.9
45gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 6.9
46gb|AY243473.1| Homo sapiens Kv3.2d voltage gated potassium chann... 40 6.9
47dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
48dbj|AB209994.1| Homo sapiens mRNA for KCNC2 variant protein, par... 40 6.9
49gb|BC093635.1| Homo sapiens potassium voltage-gated channel, Sha... 40 6.9
50gb|AF268897.2| Homo sapiens voltage gated potassium channel Kv3.... 40 6.9
51gb|AC091534.7| Homo sapiens 12 BAC RP11-404O18 (Roswell Park Can... 40 6.9
52ref|XM_236601.3| PREDICTED: Rattus norvegicus similar to Alpha-1... 40 6.9
53dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
54dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
55dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
56dbj|AK110231.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
57gb|BC111991.1| Homo sapiens potassium voltage-gated channel, Sha... 40 6.9
58dbj|AP000711.5| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 6.9
59emb|AJ937766.1| Uncultured candidate division WS3 bacterium fosm... 40 6.9
60gb|AC170257.3| Mus musculus chromosome 1, clone wi1-1711N8, comp... 40 6.9

>dbj|AB030708.1| Triticum aestivum gene for AHM1, complete cds
          Length = 3846

 Score =  597 bits (301), Expect = e-167
 Identities = 457/509 (89%)
 Strand = Plus / Plus

                                                                        
Query: 2    gccgctgcacctcgcgcaccgatgcaacagccggcggtggagaggaggccgcagccgtcg 61
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1793 gccgctgcacctcgcccaccgatgcaacagccggcggtggagaggaggccgcacccgtcg 1852

                                                                        
Query: 62   ccgcctccacagcagagcccggtatgggcagttcccctgccacggccacctccacagcgg 121
            ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct: 1853 ccgcctccacagcagagcccggtatgggcagctccccagccacggccacatccacagcgg 1912

                                                                        
Query: 122  atcccggtacggccagctccccagccaacgccgcctccacagccgactcggctgcaagca 181
            ||||||||||||||||||||||||||||||||||||| |||||||| |  ||||| ||||
Sbjct: 1913 atcccggtacggccagctccccagccaacgccgcctctacagccgagttcgctgcgagca 1972

                                                                        
Query: 182  gctacccagccttctcggcccccacagccgagttcgatgcgagcagctacccagacaccg 241
            ||||||||| |  | | ||| |||||| |||||||| |||||||||||||||||||||||
Sbjct: 1973 gctacccagacaccgccgcctccacagtcgagttcgctgcgagcagctacccagacaccg 2032

                                                                        
Query: 242  ccgcctccacagccgagttcgctgcgagcagctacccagacaccgccgcctacacagcct 301
            |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| 
Sbjct: 2033 ccgcctccacagccgagttcactgcgagcagctacccagacgccgccgcctccacagccg 2092

                                                                        
Query: 302  agttcgctgcgggcagctacccagacaccgccgcttccacagccgagcccgccgcaacca 361
            ||   |||||   ||||||||||| ||| ||||  ||||||||||||||| | |||| ||
Sbjct: 2093 agccggctgcaaccagctacccagccacagccgtctccacagccgagcccactgcaagca 2152

                                                                        
Query: 362  gctacccaggcacagccacctccacatttgagtccgttgcgagcagctaccaagctaccg 421
            |||||| || ||| |||  |||||||    |||||||||| |||||||||||||| ||||
Sbjct: 2153 gctaccaagccaccgccgtctccacagccaagtccgttgcaagcagctaccaagccaccg 2212

                                                                        
Query: 422  ccgtctccacagccgagtccgctgcaaccagctacccaaccaccgccgcctccacaaccg 481
             ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 2213 tcgtctccacagccaagtccgctgcaaccagctacccagccaccgccgcctccacaacct 2272

                                         
Query: 482  agcctgctgcaagcagcttcccagccacc 510
            || | ||||||||||||||||||||||||
Sbjct: 2273 agtccgctgcaagcagcttcccagccacc 2301



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 31      gccggcggtggagaggaggccg 52
               ||||||||||||||||||||||
Sbjct: 1152028 gccggcggtggagaggaggccg 1152049



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>emb|X07653.1|BYDVPAV Barley yellow dwarf virus - PAV genomic RNA
          Length = 5677

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 140  ccccagccaacgccgcctccacagcc 165
            ||||||||||||||| ||||||||||
Sbjct: 3512 ccccagccaacgccggctccacagcc 3537



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>ref|XM_610695.2| PREDICTED: Bos taurus similar to Proto-oncogene DBL (Proto-oncogene
           MCF-2) (LOC532185), mRNA
          Length = 4035

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 482 agcctgctgcaagcagcttcc 502
           |||||||||||||||||||||
Sbjct: 616 agcctgctgcaagcagcttcc 636



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>emb|AL109630.2|DMBR7A4 Drosophila melanogaster BAC clone BACR7A4
          Length = 212370

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    ggccgcagccgtcgccgcctc 68
             |||||||||||||||||||||
Sbjct: 72253 ggccgcagccgtcgccgcctc 72273



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>emb|CR858078.1| Pongo pygmaeus mRNA; cDNA DKFZp459O1435 (from clone DKFZp459O1435)
          Length = 2014

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 agacaccgccgcttccacagc 344
           |||||||||||||||||||||
Sbjct: 168 agacaccgccgcttccacagc 148



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>gb|BC001853.2| Homo sapiens 5-azacytidine induced 2, mRNA (cDNA clone MGC:4533
           IMAGE:3010714), complete cds
          Length = 1487

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 agacaccgccgcttccacagc 344
           |||||||||||||||||||||
Sbjct: 250 agacaccgccgcttccacagc 230



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>gb|BC001139.2| Homo sapiens 5-azacytidine induced 2, mRNA (cDNA clone MGC:2903
           IMAGE:3010714), complete cds
          Length = 1487

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 agacaccgccgcttccacagc 344
           |||||||||||||||||||||
Sbjct: 250 agacaccgccgcttccacagc 230



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>emb|CR623051.1| full-length cDNA clone CS0DI070YA05 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1366

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 agacaccgccgcttccacagc 344
           |||||||||||||||||||||
Sbjct: 328 agacaccgccgcttccacagc 308



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>dbj|AK123678.1| Homo sapiens cDNA FLJ41684 fis, clone HCASM2006131, moderately
            similar to Mus musculus AZ2 mRNA
          Length = 3081

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 324  agacaccgccgcttccacagc 344
            |||||||||||||||||||||
Sbjct: 1106 agacaccgccgcttccacagc 1086



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>emb|CR618873.1| full-length cDNA clone CS0DI040YK15 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 2097

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 agacaccgccgcttccacagc 344
           |||||||||||||||||||||
Sbjct: 321 agacaccgccgcttccacagc 301



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>emb|CR613279.1| full-length cDNA clone CS0DC001YK16 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 2051

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 agacaccgccgcttccacagc 344
           |||||||||||||||||||||
Sbjct: 263 agacaccgccgcttccacagc 243



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>emb|CR598106.1| full-length cDNA clone CS0DA010YN02 of Neuroblastoma of Homo
           sapiens (human)
          Length = 1245

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 agacaccgccgcttccacagc 344
           |||||||||||||||||||||
Sbjct: 97  agacaccgccgcttccacagc 77



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>gb|AC097726.4| Drosophila melanogaster X BAC RP98-5N14 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 146717

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    ggccgcagccgtcgccgcctc 68
             |||||||||||||||||||||
Sbjct: 72624 ggccgcagccgtcgccgcctc 72644



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>ref|NM_130512.2| Drosophila melanogaster CG11663-RA (CG11663), mRNA
          Length = 641

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 48  ggccgcagccgtcgccgcctc 68
           |||||||||||||||||||||
Sbjct: 276 ggccgcagccgtcgccgcctc 296



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>gb|AC098616.2| Homo sapiens chromosome 3 clone RP11-279I18, complete sequence
          Length = 159629

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 324   agacaccgccgcttccacagc 344
             |||||||||||||||||||||
Sbjct: 27123 agacaccgccgcttccacagc 27103



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>ref|NM_022461.2| Homo sapiens 5-azacytidine induced 2 (AZI2), mRNA
          Length = 3113

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 agacaccgccgcttccacagc 344
           |||||||||||||||||||||
Sbjct: 362 agacaccgccgcttccacagc 342



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>dbj|AB168685.1| Macaca fascicularis testis cDNA clone: QtsA-14164, similar to human
           5-azacytidine induced gene 2 (AZ2), transcript variant1,
           mRNA, RefSeq: NM_022461.2
          Length = 2031

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 agacaccgccgcttccacagc 344
           |||||||||||||||||||||
Sbjct: 160 agacaccgccgcttccacagc 140



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>gb|AC153651.4| Mus musculus BAC clone RP24-74B24 from chromosome 7, complete
            sequence
          Length = 256298

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 52   gcagccgtcgccgcctccacagcag 76
            ||||||||||||||| |||||||||
Sbjct: 8925 gcagccgtcgccgccgccacagcag 8901



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 49       gccgcagccgtcgccgcctcc 69
                |||||||||||||||||||||
Sbjct: 18200008 gccgcagccgtcgccgcctcc 18199988



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    caacgccgcctccacagccg 166
              ||||||||||||||||||||
Sbjct: 871566 caacgccgcctccacagccg 871547



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>gb|AY075167.1| Drosophila melanogaster AT05678 full insert cDNA
          Length = 644

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 48  ggccgcagccgtcgccgcctc 68
           |||||||||||||||||||||
Sbjct: 268 ggccgcagccgtcgccgcctc 288



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>ref|XM_577858.1| PREDICTED: Rattus norvegicus similar to FoxB2 protein (LOC502382),
           mRNA
          Length = 2310

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 239 ccgccgcctccacagccgagt 259
           |||||||||||||||||||||
Sbjct: 535 ccgccgcctccacagccgagt 515



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>gb|AC011545.4|AC011545 Homo sapiens chromosome 19, cosmid R30477 (LLNL-R_266D1), complete
            sequence
          Length = 38611

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 52   gcagccgtcgccgcctccacagcag 76
            ||||||||||||||| |||||||||
Sbjct: 5357 gcagccgtcgccgccgccacagcag 5333



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>gb|AC093142.2| Homo sapiens chromosome 3 clone RP11-301D8, complete sequence
          Length = 210592

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 324    agacaccgccgcttccacagc 344
              |||||||||||||||||||||
Sbjct: 181451 agacaccgccgcttccacagc 181431



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>emb|BX648471.1|HSM808619 Homo sapiens mRNA; cDNA DKFZp686E14155 (from clone DKFZp686E14155)
          Length = 3143

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 agacaccgccgcttccacagc 344
           |||||||||||||||||||||
Sbjct: 69  agacaccgccgcttccacagc 49



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>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0434E03
          Length = 142414

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    gccgcagccgtcgccgcctcc 69
             |||||||||||||||||||||
Sbjct: 22320 gccgcagccgtcgccgcctcc 22300



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>dbj|AK025592.1| Homo sapiens cDNA: FLJ21939 fis, clone HEP04507
          Length = 2248

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 agacaccgccgcttccacagc 344
           |||||||||||||||||||||
Sbjct: 252 agacaccgccgcttccacagc 232



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>gb|AF044918.1|AF044918 Homo sapiens TILP short form (tilp) gene, complete cds
          Length = 1397

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 agacaccgccgcttccacagc 344
           |||||||||||||||||||||
Sbjct: 375 agacaccgccgcttccacagc 355



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>gb|AF044917.1|AF044917 Homo sapiens TILP long form (tilp) gene, complete cds
          Length = 2318

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 agacaccgccgcttccacagc 344
           |||||||||||||||||||||
Sbjct: 375 agacaccgccgcttccacagc 355



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>gb|AE003419.2| Drosophila melanogaster chromosome X, section 3 of 74 of the complete
             sequence
          Length = 306598

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    ggccgcagccgtcgccgcctc 68
             |||||||||||||||||||||
Sbjct: 48951 ggccgcagccgtcgccgcctc 48971



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>gb|AC170864.2| Mus musculus BAC clone RP24-576D1 from chromosome 7, complete sequence
          Length = 208952

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 52     gcagccgtcgccgcctccacagcag 76
              ||||||||||||||| |||||||||
Sbjct: 160964 gcagccgtcgccgccgccacagcag 160940



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>dbj|D37809.2|STMBCPC Streptomyces hygroscopicus BcpC gene for phosphonopyruvate
           decarboxylase, complete cds
          Length = 1380

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  gaggccgcagccgtcgccgcc 66
           |||||||||||||||||||||
Sbjct: 233 gaggccgcagccgtcgccgcc 253



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>ref|XM_467309.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2007

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 48 ggccgcagccgtcgccgcctccac 71
          |||||| |||||||||||||||||
Sbjct: 30 ggccgccgccgtcgccgcctccac 7



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>ref|NM_153748.1| Homo sapiens potassium voltage-gated channel, Shaw-related
           subfamily, member 2 (KCNC2), transcript variant 3, mRNA
          Length = 3345

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  gcagccgtcgccgcctccac 71
           ||||||||||||||||||||
Sbjct: 706 gcagccgtcgccgcctccac 725



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>ref|NM_139136.2| Homo sapiens potassium voltage-gated channel, Shaw-related
           subfamily, member 2 (KCNC2), transcript variant 1, mRNA
          Length = 3510

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  gcagccgtcgccgcctccac 71
           ||||||||||||||||||||
Sbjct: 706 gcagccgtcgccgcctccac 725



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>ref|NM_139137.2| Homo sapiens potassium voltage-gated channel, Shaw-related
           subfamily, member 2 (KCNC2), transcript variant 2, mRNA
          Length = 2468

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  gcagccgtcgccgcctccac 71
           ||||||||||||||||||||
Sbjct: 706 gcagccgtcgccgcctccac 725



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>gb|AC099604.4| Mus musculus chromosome 1, clone RP23-335B22, complete sequence
          Length = 197338

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 177    aagcagctacccagccttctcggc 200
              ||||||||||||||| ||||||||
Sbjct: 115769 aagcagctacccagcattctcggc 115792



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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   caccgccgcctccacagccg 256
             ||||||||||||||||||||
Sbjct: 62121 caccgccgcctccacagccg 62102



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>ref|XM_745549.1| Aspergillus fumigatus Af293 DNA excision repair protein Rad2
           (Afu6g07500) partial mRNA
          Length = 3393

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 488 ctgcaagcagcttcccagcc 507
           ||||||||||||||||||||
Sbjct: 334 ctgcaagcagcttcccagcc 315



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>emb|CR684401.2|CNS0FR19 Tetraodon nigroviridis full-length cDNA
          Length = 1315

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 86  tgggcagttcccctgccacggcca 109
           ||||||||||||| ||||||||||
Sbjct: 233 tgggcagttcccccgccacggcca 256



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>emb|AL451000.16| Human DNA sequence from clone RP11-223J15 on chromosome 1 Contains a
             novel gene (MDS2), a eukaryotic translation elongation
             factor 1 alpha 2 (EEF1A2) pseudogene and the RPL11 gene
             for ribosomal protein L11, complete sequence
          Length = 115566

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 49    gccgcagccgtcgccgcctccacagcagagcc 80
             ||||| |||| ||||||| |||||||||||||
Sbjct: 32276 gccgccgccgccgccgccgccacagcagagcc 32307



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>gb|AY118169.1| Homo sapiens potassium voltage-gated potassium channel subfamily C
           member 2 (KCNC2) mRNA, complete cds
          Length = 1917

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  gcagccgtcgccgcctccac 71
           ||||||||||||||||||||
Sbjct: 162 gcagccgtcgccgcctccac 181



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>dbj|AK094720.1| Homo sapiens cDNA FLJ37401 fis, clone BRAMY2027717, highly similar
           to VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.2
          Length = 3344

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  gcagccgtcgccgcctccac 71
           ||||||||||||||||||||
Sbjct: 706 gcagccgtcgccgcctccac 725



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>gb|AF268896.1|AF268896 Homo sapiens voltage gated potassium channel Kv3.2b mRNA, complete
           cds
          Length = 1964

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  gcagccgtcgccgcctccac 71
           ||||||||||||||||||||
Sbjct: 183 gcagccgtcgccgcctccac 202



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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 45      ggaggccgcagccgtcgccg 64
               ||||||||||||||||||||
Sbjct: 1899165 ggaggccgcagccgtcgccg 1899146



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>gb|AY243473.1| Homo sapiens Kv3.2d voltage gated potassium channel (KCNC2) mRNA,
           complete cds; alternatively spliced
          Length = 2932

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  gcagccgtcgccgcctccac 71
           ||||||||||||||||||||
Sbjct: 183 gcagccgtcgccgcctccac 202



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 48       ggccgcagccgtcgccgcctccac 71
                |||||| |||||||||||||||||
Sbjct: 28787382 ggccgccgccgtcgccgcctccac 28787359



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>dbj|AB209994.1| Homo sapiens mRNA for KCNC2 variant protein, partial cds, clone:
           bh00196
          Length = 5223

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  gcagccgtcgccgcctccac 71
           ||||||||||||||||||||
Sbjct: 422 gcagccgtcgccgcctccac 441



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>gb|BC093635.1| Homo sapiens potassium voltage-gated channel, Shaw-related
           subfamily, member 2, transcript variant 3, mRNA (cDNA
           clone MGC:120670 IMAGE:7939480), complete cds
          Length = 1798

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  gcagccgtcgccgcctccac 71
           ||||||||||||||||||||
Sbjct: 257 gcagccgtcgccgcctccac 276



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>gb|AF268897.2| Homo sapiens voltage gated potassium channel Kv3.2a mRNA, complete
           cds; alternatively spliced
          Length = 3028

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  gcagccgtcgccgcctccac 71
           ||||||||||||||||||||
Sbjct: 183 gcagccgtcgccgcctccac 202



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>gb|AC091534.7| Homo sapiens 12 BAC RP11-404O18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 185576

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     gcagccgtcgccgcctccac 71
              ||||||||||||||||||||
Sbjct: 108379 gcagccgtcgccgcctccac 108360



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>ref|XM_236601.3| PREDICTED: Rattus norvegicus similar to
            Alpha-1,4-N-acetylglucosaminyltransferase (Alpha4GnT)
            (predicted) (LOC315951), mRNA
          Length = 2769

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 178  agcagctacccagccttctc 197
            ||||||||||||||||||||
Sbjct: 2044 agcagctacccagccttctc 2063



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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0459B01
          Length = 163087

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 48     ggccgcagccgtcgccgcctccac 71
              |||||| |||||||||||||||||
Sbjct: 103955 ggccgccgccgtcgccgcctccac 103932



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>dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470F10
          Length = 185294

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   caacgccgcctccacagccg 166
             ||||||||||||||||||||
Sbjct: 34304 caacgccgcctccacagccg 34285



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>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0427G12
          Length = 185545

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    caacgccgcctccacagccg 166
              ||||||||||||||||||||
Sbjct: 170786 caacgccgcctccacagccg 170767



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>dbj|AK110231.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-162-F04, full
            insert sequence
          Length = 3248

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 464  ccgccgcctccacaaccgagcctg 487
            ||||| ||||||||||||||||||
Sbjct: 2754 ccgcctcctccacaaccgagcctg 2777



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>gb|BC111991.1| Homo sapiens potassium voltage-gated channel, Shaw-related
           subfamily, member 2, transcript variant 3, mRNA (cDNA
           clone MGC:138196 IMAGE:8327459), complete cds
          Length = 1794

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  gcagccgtcgccgcctccac 71
           ||||||||||||||||||||
Sbjct: 257 gcagccgtcgccgcctccac 276



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>dbj|AP000711.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-51K10, complete
             sequence
          Length = 111591

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 487   gctgcaagcagcttcccagccacc 510
             |||||||||||| |||||||||||
Sbjct: 14256 gctgcaagcagcctcccagccacc 14279



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>emb|AJ937766.1| Uncultured candidate division WS3 bacterium fosmid clone b1dcf5.1.c12
          Length = 38304

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 239  ccgccgcctccacagccgag 258
            ||||||||||||||||||||
Sbjct: 4005 ccgccgcctccacagccgag 4024



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>gb|AC170257.3| Mus musculus chromosome 1, clone wi1-1711N8, complete sequence
          Length = 38245

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   ccaggcacagccacctccac 386
             ||||||||||||||||||||
Sbjct: 31011 ccaggcacagccacctccac 31030


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,348,682
Number of Sequences: 3902068
Number of extensions: 3348682
Number of successful extensions: 72710
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72214
Number of HSP's gapped (non-prelim): 465
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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