Clone Name | basdg08 |
---|---|
Clone Library Name | barley_pub |
>gb|AY112372.1| Zea mays CL6272_1 mRNA sequence Length = 1354 Score = 172 bits (87), Expect = 6e-40 Identities = 174/203 (85%) Strand = Plus / Plus Query: 102 cagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcgg 161 |||||||||| |||| |||||||||||| || ||||| || ||||||||||| |||||| Sbjct: 162 cagactgttgtgctcaaggttggcatgtcctgtgagggctgtgttggagctgtcaagcgg 221 Query: 162 gttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtc 221 || || ||||| |||||||| || ||||||| ||| |||||||||| ||| ||||||||| Sbjct: 222 gtcctgggcaagatggaaggcgttgagtcctacgacgtagacatcatggaacagaaggtc 281 Query: 222 actgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaag 281 || |||||||| |||||||| || || || || ||||| |||||||| ||||| |||||| Sbjct: 282 accgtgaagggcaatgtgacacctgacgccgtcctgcaaactgtttccaagactggcaag 341 Query: 282 aagacctccttctgggaggctga 304 ||||| || |||||||||||||| Sbjct: 342 aagacttcgttctgggaggctga 364
>ref|XM_480605.1| Oryza sativa (japonica cultivar-group), mRNA Length = 246 Score = 170 bits (86), Expect = 3e-39 Identities = 173/202 (85%) Strand = Plus / Plus Query: 103 agactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcggg 162 ||||||||| ||||||||||| ||||| || || || || ||||||||||||||||||| Sbjct: 8 agactgttgtgctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcggg 67 Query: 163 ttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtca 222 | || || || ||| |||| || |||||||| || ||||||||||||||||||||||||| Sbjct: 68 tactgggaaagatgcaaggagtggagtcctttgacgtagacatcaaggagcagaaggtca 127 Query: 223 ctgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaaga 282 |||| ||||| ||||| || || ||||| ||||| ||||| ||||| ||||| ||||||| Sbjct: 128 ctgtcaagggaaatgttacaccagatgccgttcttcagaccgtttcaaagacgggcaaga 187 Query: 283 agacctccttctgggaggctga 304 ||||||| |||||||| ||||| Sbjct: 188 agacctcgttctgggatgctga 209
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 125 bits (63), Expect = 1e-25 Identities = 105/119 (88%) Strand = Plus / Plus Query: 186 gagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatgtgacgccg 245 |||||||| || ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 6154649 gagtcctttgacgtagacatcaaggagcagaaggtcactgtcaagggaaatgttacacca 6154708 Query: 246 gatgctgttctgcagactgtttcgaagacaggcaagaagacctccttctgggaggctga 304 ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||| ||||| Sbjct: 6154709 gatgccgttcttcagaccgtttcaaagacgggcaagaagacctcgttctgggatgctga 6154767 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 102 cagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcgg 161 |||||||||| ||||||||||| ||||| || || || || |||||||||||||||||| Sbjct: 6153673 cagactgttgtgctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcgg 6153732 Query: 162 gt 163 || Sbjct: 6153733 gt 6153734 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 attcccccctccctctctct 56 |||||||||||||||||||| Sbjct: 21129012 attcccccctccctctctct 21129031
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_C05 Length = 126112 Score = 125 bits (63), Expect = 1e-25 Identities = 105/119 (88%) Strand = Plus / Plus Query: 186 gagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatgtgacgccg 245 |||||||| || ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 18042 gagtcctttgacgtagacatcaaggagcagaaggtcactgtcaagggaaatgttacacca 18101 Query: 246 gatgctgttctgcagactgtttcgaagacaggcaagaagacctccttctgggaggctga 304 ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||| ||||| Sbjct: 18102 gatgccgttcttcagaccgtttcaaagacgggcaagaagacctcgttctgggatgctga 18160 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 102 cagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcgg 161 |||||||||| ||||||||||| ||||| || || || || |||||||||||||||||| Sbjct: 17066 cagactgttgtgctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcgg 17125 Query: 162 gt 163 || Sbjct: 17126 gt 17127
>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0486F07 Length = 154926 Score = 125 bits (63), Expect = 1e-25 Identities = 105/119 (88%) Strand = Plus / Plus Query: 186 gagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatgtgacgccg 245 |||||||| || ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 110666 gagtcctttgacgtagacatcaaggagcagaaggtcactgtcaagggaaatgttacacca 110725 Query: 246 gatgctgttctgcagactgtttcgaagacaggcaagaagacctccttctgggaggctga 304 ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||| ||||| Sbjct: 110726 gatgccgttcttcagaccgtttcaaagacgggcaagaagacctcgttctgggatgctga 110784 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 102 cagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgttaagcgg 161 |||||||||| ||||||||||| ||||| || || || || |||||||||||||||||| Sbjct: 109690 cagactgttgtgctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcgg 109749 Query: 162 gt 163 || Sbjct: 109750 gt 109751
>emb|AJ844002.1| Plantago major mRNA for copper chaperone (cch1 gene) Length = 703 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 96 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 155 ||||||||||||||||| |||| |||||||||||| ||| | || || |||||||||||| Sbjct: 139 atgtctcagactgttgagctcaaggttggcatgtcgtgccaaggctgtgttggagctgtt 198 Query: 156 aagcgggttcttggcaaaatggaaggtgt 184 |||||||| ||||| |||||||||||||| Sbjct: 199 aagcgggtccttggaaaaatggaaggtgt 227 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 255 ctgcagactgtttcgaagacaggcaagaa 283 |||||||||||||| ||||| |||||||| Sbjct: 298 ctgcagactgtttcaaagactggcaagaa 326
>gb|AY603358.1| Populus alba x Populus tremula var. glandulosa copper chaperone (CCH) mRNA, complete cds Length = 540 Score = 89.7 bits (45), Expect = 7e-15 Identities = 168/209 (80%) Strand = Plus / Plus Query: 96 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 155 |||||||||||||||| |||| |||||| |||||||| || || || ||||| ||||| Sbjct: 56 atgtctcagactgttgtcctcaaggttggtatgtcatgtgaaggctgtgttggggctgtg 115 Query: 156 aagcgggttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 215 || ||||| | ||||||||||||||||| || || | || | || | |||||||| Sbjct: 116 aaaagggttttgggcaaaatggaaggtgtggaatcatatgacattgatttgaaggagcaa 175 Query: 216 aaggtcactgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcgaagaca 275 || ||||| ||||| || |||||| ||| ||||||||||| ||||| || || ||||| Sbjct: 176 aaagtcacagtgaaaggaaatgtgcagccagatgctgttcttcagaccgtctccaagacc 235 Query: 276 ggcaagaagacctccttctgggaggctga 304 || ||||||||| |||||||||| ||||| Sbjct: 236 gggaagaagaccgccttctgggaagctga 264
>ref|XM_466081.1| Oryza sativa (japonica cultivar-group), mRNA Length = 764 Score = 73.8 bits (37), Expect = 4e-10 Identities = 109/133 (81%) Strand = Plus / Plus Query: 171 aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 230 ||||||||||| || ||| |||| || ||||||| || |||||||||| || |||||| Sbjct: 231 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 290 Query: 231 ggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctcc 290 || ||||| | ||| || | ||| | ||||| || || |||||||| |||||||||||| Sbjct: 291 ggcaatgtcaagccagaagacgttttccagacggtctcaaagacagggaagaagacctcc 350 Query: 291 ttctgggaggctg 303 ||||||||||||| Sbjct: 351 ttctgggaggctg 363
>dbj|AK121599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039M13, full insert sequence Length = 764 Score = 73.8 bits (37), Expect = 4e-10 Identities = 109/133 (81%) Strand = Plus / Plus Query: 171 aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 230 ||||||||||| || ||| |||| || ||||||| || |||||||||| || |||||| Sbjct: 231 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 290 Query: 231 ggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctcc 290 || ||||| | ||| || | ||| | ||||| || || |||||||| |||||||||||| Sbjct: 291 ggcaatgtcaagccagaagacgttttccagacggtctcaaagacagggaagaagacctcc 350 Query: 291 ttctgggaggctg 303 ||||||||||||| Sbjct: 351 ttctgggaggctg 363
>gb|AF198626.1|AF198626 Oryza sativa copper chaperone homolog CCH mRNA, complete cds Length = 676 Score = 73.8 bits (37), Expect = 4e-10 Identities = 109/133 (81%) Strand = Plus / Plus Query: 171 aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 230 ||||||||||| || ||| |||| || ||||||| || |||||||||| || |||||| Sbjct: 139 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 198 Query: 231 ggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctcc 290 || ||||| | ||| || | ||| | ||||| || || |||||||| |||||||||||| Sbjct: 199 ggcaatgtcaagccagaagacgttttccagacggtctcaaagacagggaagaagacctcc 258 Query: 291 ttctgggaggctg 303 ||||||||||||| Sbjct: 259 ttctgggaggctg 271
>dbj|AK058520.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H06, full insert sequence Length = 1157 Score = 73.8 bits (37), Expect = 4e-10 Identities = 109/133 (81%) Strand = Plus / Plus Query: 171 aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 230 ||||||||||| || ||| |||| || ||||||| || |||||||||| || |||||| Sbjct: 620 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 679 Query: 231 ggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctcc 290 || ||||| | ||| || | ||| | ||||| || || |||||||| |||||||||||| Sbjct: 680 ggcaatgtcaagccagaagacgttttccagacggtctcaaagacagggaagaagacctcc 739 Query: 291 ttctgggaggctg 303 ||||||||||||| Sbjct: 740 ttctgggaggctg 752
>gb|AY253832.1| Lycopersicon esculentum copper chaperone (LeCCH) mRNA, complete cds Length = 391 Score = 69.9 bits (35), Expect = 7e-09 Identities = 116/143 (81%) Strand = Plus / Plus Query: 96 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 155 |||||||||||||| | |||| |||||||||||||||||| || || ||||| ||||| Sbjct: 3 atgtctcagactgtcgttctcaaggttggcatgtcatgcgaaggctgtgttggtgctgtg 62 Query: 156 aagcgggttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 215 || ||||| | || |||||||||||||| || | ||||| | || | |||||||| Sbjct: 63 aaaagggttttggggaaaatggaaggtgtagaaactttcgacattgatctgaaggagcaa 122 Query: 216 aaggtcactgtgaagggtaatgt 238 ||||| ||||||||||| ||||| Sbjct: 123 aaggtgactgtgaagggcaatgt 145
>ref|NM_105295.1| Arabidopsis thaliana metal ion binding AT1G66240 mRNA, complete cds Length = 494 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 96 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 155 ||||||||||| |||| ||||| || | |||| |||| |||||||| ||||||||||| Sbjct: 96 atgtctcagaccgttgttctcagagtggccatgacatgtgagggatgtgttggagctgtg 155 Query: 156 aagcgggttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 215 || | |||||||| ||||||||||| || ||||| || || || || || ||||||||| Sbjct: 156 aaaagagttcttgggaaaatggaaggcgtggagtcatttgacgttgatataaaggagcag 215 Query: 216 aa 217 || Sbjct: 216 aa 217
>gb|AY077678.1| Arabidopsis thaliana At1g66240/T6J19_6 mRNA, complete cds Length = 321 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 96 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 155 ||||||||||| |||| ||||| || | |||| |||| |||||||| ||||||||||| Sbjct: 91 atgtctcagaccgttgttctcagagtggccatgacatgtgagggatgtgttggagctgtg 150 Query: 156 aagcgggttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 215 || | |||||||| ||||||||||| || ||||| || || || || || ||||||||| Sbjct: 151 aaaagagttcttgggaaaatggaaggcgtggagtcatttgacgttgatataaaggagcag 210 Query: 216 aa 217 || Sbjct: 211 aa 212
>gb|AY039898.1| Arabidopsis thaliana At1g66240/T6J19_6 mRNA, complete cds Length = 495 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 96 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 155 ||||||||||| |||| ||||| || | |||| |||| |||||||| ||||||||||| Sbjct: 96 atgtctcagaccgttgttctcagagtggccatgacatgtgagggatgtgttggagctgtg 155 Query: 156 aagcgggttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 215 || | |||||||| ||||||||||| || ||||| || || || || || ||||||||| Sbjct: 156 aaaagagttcttgggaaaatggaaggcgtggagtcatttgacgttgatataaaggagcag 215 Query: 216 aa 217 || Sbjct: 216 aa 217
>emb|BX816283.1|CNS0AD4L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH39ZE01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 461 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 96 atgtctcagactgttgaactcagggttggcatgtcatgcgagggatgcgttggagctgtt 155 ||||||||||| |||| ||||| || | |||| |||| |||||||| ||||||||||| Sbjct: 59 atgtctcagaccgttgttctcagagtggccatgacatgtgagggatgtgttggagctgtg 118 Query: 156 aagcgggttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcag 215 || | |||||||| ||||||||||| || ||||| || || || || || ||||||||| Sbjct: 119 aaaagagttcttgggaaaatggaaggcgtggagtcatttgacgttgatataaaggagcag 178 Query: 216 aa 217 || Sbjct: 179 aa 180
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 211 agcagaaggtcactgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcga 270 |||||||||| || |||||||| ||||| | ||| || | ||| | ||||| || || | Sbjct: 19492124 agcagaaggtgacggtgaagggcaatgtcaagccagaagacgttttccagacggtctcaa 19492065 Query: 271 agacaggcaagaagacctccttctgggaggctg 303 ||||||| ||||||||||||||||||||||||| Sbjct: 19492064 agacagggaagaagacctccttctgggaggctg 19492032
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476H10 Length = 151703 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 211 agcagaaggtcactgtgaagggtaatgtgacgccggatgctgttctgcagactgtttcga 270 |||||||||| || |||||||| ||||| | ||| || | ||| | ||||| || || | Sbjct: 109651 agcagaaggtgacggtgaagggcaatgtcaagccagaagacgttttccagacggtctcaa 109592 Query: 271 agacaggcaagaagacctccttctgggaggctg 303 ||||||| ||||||||||||||||||||||||| Sbjct: 109591 agacagggaagaagacctccttctgggaggctg 109559
>emb|BX813458.1|CNS0ADQL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB18ZG08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 396 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 125 catgtcatgcgagggatgcgttggagctgttaagcgggttcttggcaaaatggaaggtgt 184 |||| |||| |||||||| ||||||||||| || | |||||||| ||||||||||| || Sbjct: 23 catgacatgtgagggatgtgttggagctgtgaaaagagttcttgggaaaatggaaggcgt 82 Query: 185 cgagtccttcgatgtagacatcaaggagcagaa 217 ||||| || || || || || ||||||||||| Sbjct: 83 ggagtcatttgacgttgatataaaggagcagaa 115
>gb|BT009582.1| Triticum aestivum clone wre1n.pk0042.e2:fis, full insert mRNA sequence Length = 601 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Plus Query: 170 caaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaa 229 |||||||||||| |||||| |||||| | ||||| || |||||||||| || ||||| Sbjct: 158 caaaatggaaggcgtcgagagcttcgacatcgacatggagcagcagaaggtgaccgtgaa 217 Query: 230 gggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctc 289 ||| || || | ||| || | |||| | ||||| || || ||||| || ||||||||| | Sbjct: 218 gggcaacgtcaagccagaagatgttttccagacggtctccaagaccgggaagaagaccgc 277 Query: 290 cttctgggaggc 301 |||||||||||| Sbjct: 278 cttctgggaggc 289
>emb|AJ585386.1| Hordeum vulgare subsp. vulgare mRNA for chopper chaperone (cch gene) Length = 467 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Plus Query: 170 caaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaa 229 |||||||||||| |||||| |||||| | ||||| || |||||||||| || ||||| Sbjct: 126 caaaatggaaggcgtcgagagcttcgacatcgacatggagcagcagaaggtgaccgtgaa 185 Query: 230 gggtaatgtgacgccggatgctgttctgcagactgtttcgaagacaggcaagaagacctc 289 ||| || || | |||||| | ||| | ||||| || || ||||| || ||||||||| | Sbjct: 186 gggcaacgtcaagccggaagacgttttccagacggtctccaagacggggaagaagaccgc 245 Query: 290 cttctgggaggc 301 |||||||||||| Sbjct: 246 cttctgggaggc 257
>gb|AC066691.3|AC066691 Arabidopsis thaliana chromosome 1 BAC T6J19 genomic sequence, complete sequence Length = 43666 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 125 catgtcatgcgagggatgcgttggagctgttaagcgggttcttggcaaaatggaaggt 182 |||| |||| |||||||| ||||||||||| || | |||||||| |||||||||||| Sbjct: 27146 catgacatgtgagggatgtgttggagctgtgaaaagagttcttgggaaaatggaaggt 27089
>gb|AC102420.10| Mus musculus chromosome 8, clone RP24-553O21, complete sequence Length = 178616 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 35 ccattcccccctccctctctctgc 58 |||||||||||||||||||||||| Sbjct: 90134 ccattcccccctccctctctctgc 90157
>ref|NM_115482.2| Arabidopsis thaliana CCH AT3G56240 (CCH) mRNA, complete cds Length = 658 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Plus Query: 168 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 227 |||||||||||||| || ||||| || || | || ||||||||||| ||||| || ||| Sbjct: 162 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 221 Query: 228 aagggtaatgt 238 || |||||||| Sbjct: 222 aaaggtaatgt 232
>gb|AF361860.1| Arabidopsis thaliana AT3g56240/F18O21_200 mRNA, complete cds Length = 628 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Plus Query: 168 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 227 |||||||||||||| || ||||| || || | || ||||||||||| ||||| || ||| Sbjct: 158 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 217 Query: 228 aagggtaatgt 238 || |||||||| Sbjct: 218 aaaggtaatgt 228
>gb|AY066056.1| Arabidopsis thaliana AT3g56240/F18O21_200 mRNA, complete cds Length = 366 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Plus Query: 168 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 227 |||||||||||||| || ||||| || || | || ||||||||||| ||||| || ||| Sbjct: 73 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 132 Query: 228 aagggtaatgt 238 || |||||||| Sbjct: 133 aaaggtaatgt 143
>emb|BX823024.1|CNS0A4Y4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB81ZE03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 602 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Plus Query: 168 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 227 |||||||||||||| || ||||| || || | || ||||||||||| ||||| || ||| Sbjct: 140 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 199 Query: 228 aagggtaatgt 238 || |||||||| Sbjct: 200 aaaggtaatgt 210
>gb|AY085657.1| Arabidopsis thaliana clone 16647 mRNA, complete sequence Length = 631 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Plus Query: 168 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 227 |||||||||||||| || ||||| || || | || ||||||||||| ||||| || ||| Sbjct: 163 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 222 Query: 228 aagggtaatgt 238 || |||||||| Sbjct: 223 aaaggtaatgt 233
>gb|U88711.1|ATU88711 Arabidopsis thaliana copper homeostasis factor (CCH) mRNA, complete cds Length = 585 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Plus Query: 168 ggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtg 227 |||||||||||||| || ||||| || || | || ||||||||||| ||||| || ||| Sbjct: 106 ggcaaaatggaaggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtg 165 Query: 228 aagggtaatgt 238 || |||||||| Sbjct: 166 aaaggtaatgt 176
>emb|BX927392.9| Zebrafish DNA sequence from clone DKEY-17E11 in linkage group 11, complete sequence Length = 158543 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 348 aatatgtaaactgtgaagtttattgt 373 |||||||||| ||||||||||||||| Sbjct: 16644 aatatgtaaattgtgaagtttattgt 16619
>emb|BX649575.18| Zebrafish DNA sequence from clone CH211-215H12 in linkage group 8, complete sequence Length = 171493 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 ccattcccccctccctctctct 56 |||||||||||||||||||||| Sbjct: 9593 ccattcccccctccctctctct 9572
>emb|CR352237.9| Zebrafish DNA sequence from clone CH211-13I11 in linkage group 11, complete sequence Length = 193648 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 348 aatatgtaaactgtgaagtttattgt 373 |||||||||| ||||||||||||||| Sbjct: 132874 aatatgtaaattgtgaagtttattgt 132849
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 tccattcccccctccctctctc 55 |||||||||||||||||||||| Sbjct: 373854 tccattcccccctccctctctc 373833
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644B06 Length = 194509 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 tccattcccccctccctctctc 55 |||||||||||||||||||||| Sbjct: 83807 tccattcccccctccctctctc 83786
>emb|AL691472.6| Mouse DNA sequence from clone RP23-217C12 on chromosome 2, complete sequence Length = 212364 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 ccattcccccctccctctctct 56 |||||||||||||||||||||| Sbjct: 109296 ccattcccccctccctctctct 109275
>gb|AC109147.19| Mus musculus chromosome 8, clone RP23-341D16, complete sequence Length = 184600 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 ccctccctctctctgcgccct 63 ||||||||||||||||||||| Sbjct: 123291 ccctccctctctctgcgccct 123311
>ref|XM_764566.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_93_39365_43285) partial mRNA Length = 3921 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 198 gtagacatcaaggagcagaaggtca 222 |||||||||||||||| |||||||| Sbjct: 1827 gtagacatcaaggagcggaaggtca 1803
>gb|AC007917.15| Homo sapiens 3 BAC RP11-379C23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186968 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 tctgggaggctgaaccctcag 312 ||||||||||||||||||||| Sbjct: 84810 tctgggaggctgaaccctcag 84790
>gb|AC102004.7| Mus musculus chromosome 15, clone RP24-489M6, complete sequence Length = 164810 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 atgtaaactgtgaagtttat 370 |||||||||||||||||||| Sbjct: 37814 atgtaaactgtgaagtttat 37833
>ref|NM_175406.1| Mus musculus ATPase, H+ transporting, lysosomal V0 subunit D2 (Atp6v0d2), mRNA Length = 2523 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 aagtttattgtagcaatggc 382 |||||||||||||||||||| Sbjct: 2487 aagtttattgtagcaatggc 2468
>gb|AY517482.1| Mus musculus putative osteoclast-specific vacuolar ATP synthase mRNA, complete cds Length = 2506 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 aagtttattgtagcaatggc 382 |||||||||||||||||||| Sbjct: 2476 aagtttattgtagcaatggc 2457
>emb|AL773599.11| Mouse DNA sequence from clone RP23-326I8 on chromosome 4, complete sequence Length = 46151 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 aagtttattgtagcaatggc 382 |||||||||||||||||||| Sbjct: 12410 aagtttattgtagcaatggc 12429
>gb|AC133550.2| Homo sapiens chromosome 16 clone RP11-22P6, complete sequence Length = 58207 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 tctgggaggctgaaccctca 311 |||||||||||||||||||| Sbjct: 11096 tctgggaggctgaaccctca 11077
>gb|AC132452.3| Mus musculus BAC clone RP23-195K10 from chromosome 19, complete sequence Length = 218688 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 tccattcccccctccctctctctg 57 ||||||||||||||||| |||||| Sbjct: 212161 tccattcccccctccctgtctctg 212184
>gb|AY145896.1| Mus musculus vacuolar proton-translocating ATPase d subunit d2 isoform mRNA, complete cds Length = 2523 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 aagtttattgtagcaatggc 382 |||||||||||||||||||| Sbjct: 2487 aagtttattgtagcaatggc 2468
>gb|AC109460.3| Homo sapiens chromosome 16 clone RP11-264B17, complete sequence Length = 163424 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 tctgggaggctgaaccctca 311 |||||||||||||||||||| Sbjct: 9308 tctgggaggctgaaccctca 9327
>gb|AC121612.2| Mus musculus BAC clone RP23-337A17 from 6, complete sequence Length = 209548 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 cattcccccctccctctctc 55 |||||||||||||||||||| Sbjct: 38361 cattcccccctccctctctc 38380
>gb|AC112990.7| Mus musculus chromosome 19, clone RP24-317E20, complete sequence Length = 183322 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 tccattcccccctccctctctctg 57 ||||||||||||||||| |||||| Sbjct: 85767 tccattcccccctccctgtctctg 85790
>gb|AY270588.1| Homo sapiens clone SKG03-F03 putative promoter sequence Length = 435 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 tctgggaggctgaaccctca 311 |||||||||||||||||||| Sbjct: 360 tctgggaggctgaaccctca 379
>gb|AC157550.3| Mus musculus chromosome 15, clone RP24-263A11, complete sequence Length = 198532 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 atgtaaactgtgaagtttat 370 |||||||||||||||||||| Sbjct: 189871 atgtaaactgtgaagtttat 189890
>dbj|AK137586.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830148K22 product:ATPase, H+ transporting, V0 subunit D, isoform 2, full insert sequence Length = 2486 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 aagtttattgtagcaatggc 382 |||||||||||||||||||| Sbjct: 2471 aagtttattgtagcaatggc 2452
>dbj|AK156988.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830111N13 product:hypothetical protein, full insert sequence Length = 1759 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 atgtaaactgtgaagtttat 370 |||||||||||||||||||| Sbjct: 96 atgtaaactgtgaagtttat 115
>dbj|AK170578.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630109C16 product:ATPase, H+ transporting, V0 subunit D, isoform 2, full insert sequence Length = 2447 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 aagtttattgtagcaatggc 382 |||||||||||||||||||| Sbjct: 2432 aagtttattgtagcaatggc 2413
>dbj|AK170405.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630102K05 product:ATPase, H+ transporting, V0 subunit D, isoform 2, full insert sequence Length = 2475 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 aagtttattgtagcaatggc 382 |||||||||||||||||||| Sbjct: 2461 aagtttattgtagcaatggc 2442
>emb|CR406297.1| Gallus gallus finished cDNA, clone ChEST860i24 Length = 1380 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 gtttccattcccccctccctctct 54 |||| ||||||||||||||||||| Sbjct: 119 gtttgcattcccccctccctctct 96
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ttcccccctccctctctctg 57 |||||||||||||||||||| Sbjct: 871446 ttcccccctccctctctctg 871465
>gb|AC156632.2| Mus musculus BAC clone RP24-511E24 from chromosome 12, complete sequence Length = 173515 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 taaactgtgaagtttattgt 373 |||||||||||||||||||| Sbjct: 13901 taaactgtgaagtttattgt 13920
>gb|AC135783.2| Homo sapiens chromosome 16 clone CTD-2555L18, complete sequence Length = 224150 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 tctgggaggctgaaccctca 311 |||||||||||||||||||| Sbjct: 4588 tctgggaggctgaaccctca 4569
>gb|AC154854.2| Mus musculus BAC clone RP23-23O4 from chromosome 16, complete sequence Length = 209970 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 tttccattcccccctccctctctc 55 |||||||||| ||||||||||||| Sbjct: 122255 tttccattcctccctccctctctc 122232
>gb|AC154405.2| Mus musculus BAC clone RP24-248O10 from chromosome 12, complete sequence Length = 158411 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 taaactgtgaagtttattgt 373 |||||||||||||||||||| Sbjct: 83523 taaactgtgaagtttattgt 83504
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 attcccccctccctctctct 56 |||||||||||||||||||| Sbjct: 100222 attcccccctccctctctct 100241
>ref|NM_209039.1| Eremothecium gossypii ACR284Cp (ACR284C), mRNA Length = 1452 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 ttcccccctccctctctctg 57 |||||||||||||||||||| Sbjct: 1148 ttcccccctccctctctctg 1129
>gb|AC100406.7| Mus musculus chromosome 9, clone RP23-134M7, complete sequence Length = 183837 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 tccattcccccctccctctctctg 57 ||||||||||||||||||| |||| Sbjct: 66053 tccattcccccctccctctgtctg 66076
>dbj|AB088358.1| Mus musculus Atp6Vod2 mRNA for proton-translocating ATPase d subunit isoform d2, complete cds Length = 2482 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 aagtttattgtagcaatggc 382 |||||||||||||||||||| Sbjct: 2447 aagtttattgtagcaatggc 2428
>gb|AC145929.4| Gallus gallus BAC clone CH261-31A6 from chromosome unknown, complete sequence Length = 172539 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 gtttccattcccccctccctctct 54 |||| ||||||||||||||||||| Sbjct: 157479 gtttgcattcccccctccctctct 157502
>emb|AL954824.2| Mouse DNA sequence from clone RP23-326I8 on chromosome 4, complete sequence Length = 46151 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 aagtttattgtagcaatggc 382 |||||||||||||||||||| Sbjct: 33742 aagtttattgtagcaatggc 33723
>emb|AL591436.8| Mouse DNA sequence from clone RP23-434F13 on chromosome 11, complete sequence Length = 187006 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tcccccctccctctctctgc 58 |||||||||||||||||||| Sbjct: 31368 tcccccctccctctctctgc 31349 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tcccccctccctctctctgc 58 |||||||||||||||||||| Sbjct: 31343 tcccccctccctctctctgc 31324 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tcccccctccctctctctgc 58 |||||||||||||||||||| Sbjct: 31318 tcccccctccctctctctgc 31299 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,330,263 Number of Sequences: 3902068 Number of extensions: 4330263 Number of successful extensions: 92856 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92554 Number of HSP's gapped (non-prelim): 298 length of query: 459 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 437 effective length of database: 17,147,199,772 effective search space: 7493326300364 effective search space used: 7493326300364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)