Clone Name | basdf06 |
---|---|
Clone Library Name | barley_pub |
>RK21_ARATH (P51412) 50S ribosomal protein L21, chloroplast precursor (CL21)| Length = 220 Score = 90.9 bits (224), Expect = 2e-18 Identities = 42/58 (72%), Positives = 49/58 (84%) Frame = +3 Query: 300 KDADIFAVVMIGSRQYIVMPGRYIYTQRLKDANVNDQIILNKVLLVSTRDKAYIGMPV 473 K +IFAV+M+G RQYIV PGRY+YTQRLKDANV+DQI+LNKVLLV T+ YIG PV Sbjct: 96 KREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPV 153
>RK21_SPIOL (P24613) 50S ribosomal protein L21, chloroplast precursor (CL21)| (CS-L7) Length = 256 Score = 85.1 bits (209), Expect = 8e-17 Identities = 40/55 (72%), Positives = 48/55 (87%) Frame = +3 Query: 309 DIFAVVMIGSRQYIVMPGRYIYTQRLKDANVNDQIILNKVLLVSTRDKAYIGMPV 473 +IFAVV+IGSRQYIV+PGR+IYTQRLK A VND+I+LNKVLLV T+ YIG P+ Sbjct: 122 EIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPI 176
>RM21_ARATH (Q8L9A0) 50S ribosomal protein L21, mitochondrial precursor| Length = 270 Score = 51.2 bits (121), Expect = 1e-06 Identities = 23/54 (42%), Positives = 37/54 (68%) Frame = +3 Query: 312 IFAVVMIGSRQYIVMPGRYIYTQRLKDANVNDQIILNKVLLVSTRDKAYIGMPV 473 +FA+V IGS Q+ V G I+T++LK ++ND++ L KVLL+ + + IG P+ Sbjct: 140 VFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPI 193
>RL21_THEMA (Q9X1G9) 50S ribosomal protein L21| Length = 105 Score = 41.6 bits (96), Expect = 0.001 Identities = 17/53 (32%), Positives = 32/53 (60%) Frame = +3 Query: 312 IFAVVMIGSRQYIVMPGRYIYTQRLKDANVNDQIILNKVLLVSTRDKAYIGMP 470 ++A+V RQY V G+ +YT++ KD + D+I+ ++V+ V + +G P Sbjct: 2 LYAIVETAGRQYRVEEGKILYTEKQKDYSPGDEIVFDRVVFVRKDGEVLVGKP 54
>RL21_SYNY3 (P74266) 50S ribosomal protein L21| Length = 124 Score = 38.1 bits (87), Expect = 0.012 Identities = 21/52 (40%), Positives = 28/52 (53%) Frame = +3 Query: 315 FAVVMIGSRQYIVMPGRYIYTQRLKDANVNDQIILNKVLLVSTRDKAYIGMP 470 +A++ IG Q V PGR+ L DA D +++KVLLV D IG P Sbjct: 3 YAIIEIGGTQIRVEPGRFYEINHL-DAAPEDSYVVDKVLLVKDGDNVTIGQP 53
>RL21_SYNP7 (Q9Z3H5) 50S ribosomal protein L21| Length = 127 Score = 35.4 bits (80), Expect = 0.075 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 315 FAVVMIGSRQYIVMPGRYIYTQRLKDANVNDQIILNKVLLVSTRDKAYIGMP 470 +A++ +Q V PGR+ RL DA+++ + L+KVLLV IG P Sbjct: 3 YAIIEASGKQLWVEPGRFYDLDRL-DADLDQSLTLDKVLLVQDEGAPQIGQP 53
>RK21_CYACA (O19884) Chloroplast 50S ribosomal protein L21| Length = 108 Score = 34.7 bits (78), Expect = 0.13 Identities = 20/52 (38%), Positives = 26/52 (50%) Frame = +3 Query: 315 FAVVMIGSRQYIVMPGRYIYTQRLKDANVNDQIILNKVLLVSTRDKAYIGMP 470 +A+V RQ PG+Y Y AN D+II KVLL+ + IG P Sbjct: 4 YAIVKASGRQLWFEPGKY-YNINYVHANPGDKIIFYKVLLLKNTNSLLIGKP 54
>RK21_ODOSI (P49557) Chloroplast 50S ribosomal protein L21| Length = 105 Score = 33.1 bits (74), Expect = 0.37 Identities = 17/52 (32%), Positives = 29/52 (55%) Frame = +3 Query: 315 FAVVMIGSRQYIVMPGRYIYTQRLKDANVNDQIILNKVLLVSTRDKAYIGMP 470 +A+V I RQ+ + G+Y R+ + +I LN+VLL++ + IG P Sbjct: 3 YAIVEISGRQFWIETGKYYDFNRIP-TELGKEITLNRVLLLNNEGEILIGKP 53
>RL21_CHLMU (Q9PJX5) 50S ribosomal protein L21| Length = 107 Score = 32.0 bits (71), Expect = 0.83 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +3 Query: 315 FAVVMIGSRQYIVMPGRYIYTQRLKD-ANVNDQIILNKVLLVSTRDKAYIGMP 470 +AVV G++QY V G I + L + N +++ +VL V +KA +G P Sbjct: 4 YAVVQTGNKQYQVRKGDVIDVELLDGISEENKEVLFQEVLFVFDGEKASVGSP 56
>RK21_GUITH (O78429) Chloroplast 50S ribosomal protein L21| Length = 104 Score = 30.8 bits (68), Expect = 1.9 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = +3 Query: 315 FAVVMIGSRQYIVMPGRYIYTQRLKDANVNDQIILNKVLLVSTRDKAYIGMP 470 +A++ +Q+ V PGR+ Y + D+I L +VLL++ +G P Sbjct: 3 YAIIEASGKQFWVEPGRF-YDFNSLNVEPGDKIALTRVLLINDNGNITVGKP 53
>RL21_MYCPN (P78026) 50S ribosomal protein L21| Length = 100 Score = 30.0 bits (66), Expect = 3.2 Identities = 18/51 (35%), Positives = 31/51 (60%) Frame = +3 Query: 318 AVVMIGSRQYIVMPGRYIYTQRLKDANVNDQIILNKVLLVSTRDKAYIGMP 470 A+V+ GS+QY+V + ++L +A V +I L+KVL++ + IG P Sbjct: 3 AIVVCGSKQYLVHENDTFFVEKL-EAPVGKEIQLDKVLMLDEK----IGAP 48
>RL21_THET8 (P60492) 50S ribosomal protein L21| Length = 101 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +3 Query: 312 IFAVVMIGSRQYIVMPGRYIYTQRLKDANVNDQIILNKVLLVSTRDKAYIGMPV 473 +FA+V G +QY V PG + ++L DA + L +LL +K +G PV Sbjct: 1 MFAIVKTGGKQYRVEPGLKLRVEKL-DAEPGATVELPVLLLGG--EKTVVGTPV 51
>SYA_DEIRA (Q9RS27) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 890 Score = 28.5 bits (62), Expect = 9.2 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = -3 Query: 169 VAGAVKEREVLAGRKAAAWRSGVLEGRRRRGSVAVAMDGARNDGEGER 26 VA V+ E LAG +A AW L GR + A A+ +G ER Sbjct: 711 VAAGVRRIEALAGEQATAW----LRGRLNASAKAAALLNTSPEGLEER 754 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,858,363 Number of Sequences: 219361 Number of extensions: 738502 Number of successful extensions: 1897 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1870 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1896 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)