>YG4B_YEAST (P46951) Hypothetical 95.4 kDa protein in SNG1-PMT6 intergenic|
           region
          Length = 817

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 13/44 (29%), Positives = 29/44 (65%)
 Frame = -3

Query: 259 NWIQN*FFVECLLEMNSPASYMSKVIMEYVFLILSKIYFNKLEN 128
           N +QN F+ E L  +++     + ++ EY+ LI++K+ FN++++
Sbjct: 162 NIMQNVFYKELLAHVDTIPPESNGLLFEYISLIVAKLRFNQIQD 205

>MATK_VACVI (Q8WIJ9) Maturase K (Intron maturase)|
          Length = 502

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = -2

Query: 356 DPK*IHLGFFFQHIH*QLRLQVKMNELPNKNSELDPKLIFCGVPTRNE-FSSILYVQGHY 180
           DP  +HL  FF H            E PN+NS + PK        RN+ F   LY   ++
Sbjct: 169 DPSSLHLLRFFLH------------EYPNRNSLITPKKYSFSFSKRNQKFFLFLY---NF 213

Query: 179 GVCLFDSVENLFQ*AGKFLCN 117
            VC ++S+    +     LC+
Sbjct: 214 HVCEYESIFVFLRNQSSHLCS 234

>RAD17_YEAST (P48581) DNA damage checkpoint control protein RAD17 (EC 3.1.11.2)|
           (DNA repair exonuclease RAD17)
          Length = 401

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -2

Query: 407 YGAGNGNQTRNPNIMSLDPK*IHLGFFFQHIH*QLRLQVKMNELPNKNSELDPKLIFCGV 228
           YG   GN+T N N++ L+ K               ++++   E  NKN E + +   C  
Sbjct: 348 YGTDKGNETSNDNLLQLNGK---------------KIKLPSEEENNKNRESEDEENHCKY 392

Query: 227 PTRN 216
           PT++
Sbjct: 393 PTKD 396


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,703,549
Number of Sequences: 219361
Number of extensions: 1819608
Number of successful extensions: 3538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3538
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)