Clone Name | basdd23 |
---|---|
Clone Library Name | barley_pub |
>CLAT_RAT (P32738) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)| (Choline acetylase) (ChAT) Length = 639 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +1 Query: 196 KNLKFLTYKLKILNVSFSKKEKYCIRQGVMVFLVA*YHRL 315 KNL F+ YK +F KK+KY + V L Y+RL Sbjct: 398 KNLDFIVYKFDNYGKTFIKKQKYSPDGFIQVALQLAYYRL 437
>CHLB_CYAPA (P48099) Light-independent protochlorophyllide reductase subunit B| (EC 1.18.-.-) (LI-POR subunit B) (DPOR subunit B) Length = 440 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -3 Query: 192 EKEEDPGLCIRTMYTAILLIIQQDLQNFRYSKLVNS 85 +KEE P L + T T I+Q+DLQNF +NS Sbjct: 81 DKEEQPDLIVLTP-TCTSSILQEDLQNFVEQASLNS 115
>KSGA_EHRRW (Q5HBC6) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 262 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = -2 Query: 169 LHQDDVYSHFINYSTRPSEFQIFQIGQLAGTQQSS 65 +H D+ +NY+ S F I +IG GT S Sbjct: 18 IHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYS 52
>KSGA_EHRRG (Q5FH30) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 262 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = -2 Query: 169 LHQDDVYSHFINYSTRPSEFQIFQIGQLAGTQQSS 65 +H D+ +NY+ S F I +IG GT S Sbjct: 18 IHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYS 52
>TERT_SCHPO (O13339) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) Length = 988 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/97 (23%), Positives = 44/97 (45%) Frame = +1 Query: 103 ISEILKVLLNN**NGCIHRPDAEAGVLLLFEKNLKFLTYKLKILNVSFSKKEKYCIRQGV 282 ++ ILK L+N + +G+ E +K LT+K +L ++KY +R Sbjct: 542 VASILKHLIN----------EESSGIPFNLEVYMKLLTFKKDLLKHRMFGRKKYFVR--- 588 Query: 283 MVFLVA*YHRLKGPSDGFF*ERKKRFTENRIIVELYS 393 + + + Y R+K D F KK+ + ++ Y+ Sbjct: 589 -IDIKSCYDRIK--QDLMFRIVKKKLKDPEFVIRKYA 622
>CCNB3_MOUSE (Q810T2) G2/mitotic-specific cyclin-B3| Length = 1396 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 19/69 (27%) Frame = -3 Query: 165 IRTMYTAILLIIQ----------QDLQNFRYSKLVNSQ---------ERNSPPQLHTTAF 43 I T+Y +L + Q DLQNF +K+V+ + E + P + + AF Sbjct: 1007 IDTLYERVLALSQGLIAADQLSFTDLQNFEETKIVDEEEFFKSFLVFENKNSPNMSSNAF 1066 Query: 42 KFRTRTDAA 16 + RT +A Sbjct: 1067 ESRTDNSSA 1075 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,547,583 Number of Sequences: 219361 Number of extensions: 1065624 Number of successful extensions: 2253 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2253 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)