Clone Name | basdg01 |
---|---|
Clone Library Name | barley_pub |
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 79.7 bits (195), Expect = 4e-15 Identities = 34/56 (60%), Positives = 49/56 (87%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 E GR+YVGNLP++ T+++L+ F+EAG+V +V+I+YD++TDRSRGFAFVTM + EE Sbjct: 112 EGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEE 167 Score = 48.1 bits (113), Expect = 1e-05 Identities = 21/54 (38%), Positives = 34/54 (62%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 P ++YV NL + T+ L AF++ ++IYD+ + RSRGF F+T ++AE Sbjct: 216 PHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAE 269
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 66.6 bits (161), Expect = 3e-11 Identities = 29/53 (54%), Positives = 41/53 (77%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +++VGNLP++ +A L F AG+V+ V++IYDK+T RSRGF FVTM+T EE Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEE 140 Score = 52.8 bits (125), Expect = 5e-07 Identities = 24/53 (45%), Positives = 36/53 (67%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 R+YVGNL + L FSE G+V D +++YD+ + RSRGF FVT ++++E Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKE 260
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 65.1 bits (157), Expect = 9e-11 Identities = 29/53 (54%), Positives = 41/53 (77%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +I+VGNLP++ +A L F AG+V+ V++IYDK+T RSRGF FVTM++ EE Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Score = 55.5 bits (132), Expect = 7e-08 Identities = 26/53 (49%), Positives = 35/53 (66%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 R+YVGNL + L FSE G V D +++YD+ + RSRGF FVT ++AEE Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 241
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 65.1 bits (157), Expect = 9e-11 Identities = 28/53 (52%), Positives = 41/53 (77%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +++VGNLP++ +A L F AG+V+ V++IYDK++ RSRGF FVTM+T EE Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEE 141 Score = 53.9 bits (128), Expect = 2e-07 Identities = 25/53 (47%), Positives = 36/53 (67%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 R+YVGNL + L FSE G+V D +++YD+ + RSRGF FVT ++A+E Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKE 261
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 64.7 bits (156), Expect = 1e-10 Identities = 28/53 (52%), Positives = 40/53 (75%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +++VGNLP+ +A+L F AG+V+ V++IYDKIT RSRGF FVTM++ E Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSE 144 Score = 50.1 bits (118), Expect = 3e-06 Identities = 23/53 (43%), Positives = 35/53 (66%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 R+YVGNL + L + FSE G V + ++IYD+ + RS+GF FVT +++E Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 63.9 bits (154), Expect = 2e-10 Identities = 28/53 (52%), Positives = 40/53 (75%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +++VGNL + +A+L F AG+V+ V++IYDK+T RSRGF FVTM+TA E Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAE 152 Score = 49.7 bits (117), Expect = 4e-06 Identities = 22/53 (41%), Positives = 36/53 (67%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 R+YVGNL + L F+E G V + ++IYD+ + RS+GF FVT+++++E Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQE 310
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 62.8 bits (151), Expect = 4e-10 Identities = 28/56 (50%), Positives = 39/56 (69%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 E +++VGNLPY + +L F AG V+ ++IY++ TDRSRGF FVTM+T EE Sbjct: 53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEE 108 Score = 55.8 bits (133), Expect = 5e-08 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +3 Query: 282 PRNRPALGQEPG-RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P P EP R+YVGNLP+ + L FSE G V +++ D+ T RSRGF FVT Sbjct: 137 PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVT 196 Query: 459 MATAEE 476 M++ E Sbjct: 197 MSSESE 202
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 62.8 bits (151), Expect = 4e-10 Identities = 28/56 (50%), Positives = 39/56 (69%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 E +++VGNLPY + L F +AG V+ ++IY++ TDRSRGF FVTM+T EE Sbjct: 95 EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEE 150 Score = 58.2 bits (139), Expect = 1e-08 Identities = 28/65 (43%), Positives = 38/65 (58%) Frame = +3 Query: 282 PRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM 461 P P Q RIYVGN+P+ A L FSE G V ++++D+ + RSRGF FVTM Sbjct: 180 PERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTM 239 Query: 462 ATAEE 476 ++ E Sbjct: 240 SSEAE 244
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 61.2 bits (147), Expect = 1e-09 Identities = 30/65 (46%), Positives = 39/65 (60%) Frame = +3 Query: 282 PRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM 461 P P ++ RIYVGN+P+ A L FSE G V +++YD+ T RSRGF FVTM Sbjct: 219 PERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTM 278 Query: 462 ATAEE 476 A+ E Sbjct: 279 ASEAE 283 Score = 60.8 bits (146), Expect = 2e-09 Identities = 27/56 (48%), Positives = 39/56 (69%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 E +++VGNLPY + L F +AG V+ ++IY++ TD+SRGF FVTM+T EE Sbjct: 134 EDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEE 189
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 61.2 bits (147), Expect = 1e-09 Identities = 28/53 (52%), Positives = 40/53 (75%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +I+VGNL ++ +A L F AG+V+ V++IYDK+T RSRGF FVTM++ EE Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Score = 55.5 bits (132), Expect = 7e-08 Identities = 26/53 (49%), Positives = 35/53 (66%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 R+YVGNL + L FSE G V D +++YD+ + RSRGF FVT ++AEE Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 247
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 60.5 bits (145), Expect = 2e-09 Identities = 28/65 (43%), Positives = 39/65 (60%) Frame = +3 Query: 282 PRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM 461 P P + + R+YVGNLP+ L FSE G V + +++YD+ T RSRGF FVTM Sbjct: 233 PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTM 292 Query: 462 ATAEE 476 + +E Sbjct: 293 SDVDE 297 Score = 57.0 bits (136), Expect = 2e-08 Identities = 24/56 (42%), Positives = 39/56 (69%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 E +++VGNL Y + L F +AG+V+ ++IY++ TD+SRGF FVTM++ +E Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 53.5 bits (127), Expect = 3e-07 Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM-ATAEE 476 IYVGNL Y + A+LTA F+E GSV VQ+ D+ T R RGF FV + A AEE Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEE 55
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 53.1 bits (126), Expect = 4e-07 Identities = 24/58 (41%), Positives = 35/58 (60%) Frame = +3 Query: 303 GQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 G+ R+YVGN+P EL E G+++ +++YDK + RSR F FVTM T E+ Sbjct: 80 GEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVED 137 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/57 (36%), Positives = 31/57 (54%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 + P ++Y+GNL T T L FSE G V ++ T +S GF FV+ ++ EE Sbjct: 181 ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEE 237
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/66 (34%), Positives = 37/66 (56%) Frame = +3 Query: 276 YPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +P R +P + +I+VG L T ++ F + G VDD +++DK T+R RGF FV Sbjct: 96 FPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFV 155 Query: 456 TMATAE 473 T + + Sbjct: 156 TFESED 161 Score = 40.4 bits (93), Expect = 0.002 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P +P ++++G L + T L F + G V + ++ D +T RSRGF FVT Sbjct: 13 PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 51.2 bits (121), Expect = 1e-06 Identities = 23/66 (34%), Positives = 37/66 (56%) Frame = +3 Query: 276 YPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +P R +P + +I+VG L T ++ F + G VDD +++DK T+R RGF FV Sbjct: 96 FPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFV 155 Query: 456 TMATAE 473 T + + Sbjct: 156 TFESED 161 Score = 40.4 bits (93), Expect = 0.002 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P +P ++++G L + T L F + G V + ++ D +T RSRGF FVT Sbjct: 13 PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 51.2 bits (121), Expect = 1e-06 Identities = 23/66 (34%), Positives = 37/66 (56%) Frame = +3 Query: 276 YPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +P R +P + +I+VG L T ++ F + G VDD +++DK T+R RGF FV Sbjct: 96 FPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFV 155 Query: 456 TMATAE 473 T + + Sbjct: 156 TFESED 161 Score = 40.4 bits (93), Expect = 0.002 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P +P ++++G L + T L F + G V + ++ D +T RSRGF FVT Sbjct: 13 PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 48.5 bits (114), Expect = 9e-06 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Frame = +3 Query: 279 PPRNRPALGQEPG---RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449 PP + GQ+P I+VG +P EL F +AG + D++++ D +T +RG+A Sbjct: 57 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 116 Query: 450 FVTMATAE 473 FVT T E Sbjct: 117 FVTFCTKE 124
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 48.5 bits (114), Expect = 9e-06 Identities = 22/55 (40%), Positives = 33/55 (60%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 E GR++V NLPYT T +L FS+ G + ++ D +T + +GFAF+T E Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPE 454
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 48.5 bits (114), Expect = 9e-06 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Frame = +3 Query: 279 PPRNRPALGQEPG---RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449 PP + GQ+P I+VG +P EL F +AG + D++++ D +T +RG+A Sbjct: 147 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 206 Query: 450 FVTMATAE 473 FVT T E Sbjct: 207 FVTFCTKE 214
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 48.5 bits (114), Expect = 9e-06 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Frame = +3 Query: 279 PPRNRPALGQEPG---RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449 PP + GQ+P I+VG +P EL F +AG + D++++ D +T +RG+A Sbjct: 147 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 206 Query: 450 FVTMATAE 473 FVT T E Sbjct: 207 FVTFCTKE 214
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 47.8 bits (112), Expect = 1e-05 Identities = 20/53 (37%), Positives = 33/53 (62%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452 PA+ + ++VGN+PY T +L FSE GSV +++YD+ T + +G+ F Sbjct: 9 PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 47.8 bits (112), Expect = 1e-05 Identities = 20/53 (37%), Positives = 33/53 (62%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452 PA+ + ++VGN+PY T +L FSE GSV +++YD+ T + +G+ F Sbjct: 9 PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 47.4 bits (111), Expect = 2e-05 Identities = 22/49 (44%), Positives = 31/49 (63%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464 +I+VG LPY T A L F G +++ +I D+ T +SRG+ FVTMA Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA 60
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 47.4 bits (111), Expect = 2e-05 Identities = 22/49 (44%), Positives = 31/49 (63%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464 +I+VG LPY T A L F G +++ +I D+ T +SRG+ FVTMA Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA 81
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 47.4 bits (111), Expect = 2e-05 Identities = 21/61 (34%), Positives = 34/61 (55%) Frame = +3 Query: 276 YPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +P R +P + +I+VG L ++ F + G V+D +++DK T+R RGF FV Sbjct: 97 FPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFV 156 Query: 456 T 458 T Sbjct: 157 T 157 Score = 43.5 bits (101), Expect = 3e-04 Identities = 19/52 (36%), Positives = 31/52 (59%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464 +PG++++G L + + L FS+ G + + ++ D T RSRGF FVT A Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 47.4 bits (111), Expect = 2e-05 Identities = 21/61 (34%), Positives = 34/61 (55%) Frame = +3 Query: 276 YPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +P R +P + +I+VG L ++ F + G V+D +++DK T+R RGF FV Sbjct: 97 FPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFV 156 Query: 456 T 458 T Sbjct: 157 T 157 Score = 43.5 bits (101), Expect = 3e-04 Identities = 19/52 (36%), Positives = 31/52 (59%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464 +PG++++G L + + L FS+ G + + ++ D T RSRGF FVT A Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 47.0 bits (110), Expect = 3e-05 Identities = 23/51 (45%), Positives = 33/51 (64%) Frame = +3 Query: 303 GQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 G E G+++VG L ++ T L + FS+ G V D I+ DK T++SRGF FV Sbjct: 6 GDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56 Score = 43.5 bits (101), Expect = 3e-04 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 10/70 (14%) Frame = +3 Query: 279 PPRNRPALG---QEP-------GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKIT 428 P R+RP G +EP +I+VG +P+ EL F+ G V +V +IYD Sbjct: 92 PERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEK 151 Query: 429 DRSRGFAFVT 458 R RGF F+T Sbjct: 152 QRPRGFGFIT 161
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 46.2 bits (108), Expect = 4e-05 Identities = 23/51 (45%), Positives = 31/51 (60%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 IYVGN+ Y TA EL A F GSV+ V I+ DK + +GFA++ + E Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 223
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 46.2 bits (108), Expect = 4e-05 Identities = 23/51 (45%), Positives = 31/51 (60%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 IYVGN+ Y TA EL A F GSV+ V I+ DK + +GFA++ + E Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 223
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 46.2 bits (108), Expect = 4e-05 Identities = 23/51 (45%), Positives = 31/51 (60%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 IYVGN+ Y TA EL A F GSV+ V I+ DK + +GFA++ + E Sbjct: 169 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 219
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 46.2 bits (108), Expect = 4e-05 Identities = 20/45 (44%), Positives = 30/45 (66%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YVGN+ Y+ T EL + F+ GSV+ V I+ DK T +GFA++ Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYI 101
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 46.2 bits (108), Expect = 4e-05 Identities = 20/57 (35%), Positives = 33/57 (57%) Frame = +3 Query: 282 PRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452 P PA+ + ++VGN+PY T +L FSE G V +++YD+ T + +G+ F Sbjct: 5 PVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 46.2 bits (108), Expect = 4e-05 Identities = 19/59 (32%), Positives = 33/59 (55%) Frame = +3 Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 + + G+++VG L + L FS+ G + +V ++ D+ T RSRGF FVT ++ Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 46.2 bits (108), Expect = 4e-05 Identities = 19/59 (32%), Positives = 33/59 (55%) Frame = +3 Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 + + G+++VG L + L FS+ G + +V ++ D+ T RSRGF FVT ++ Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 45.8 bits (107), Expect = 6e-05 Identities = 19/59 (32%), Positives = 33/59 (55%) Frame = +3 Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 + + G+++VG L + L FS+ G + +V ++ D+ T RSRGF FVT ++ Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 45.8 bits (107), Expect = 6e-05 Identities = 19/59 (32%), Positives = 33/59 (55%) Frame = +3 Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 + + G+++VG L + L FS+ G + +V ++ D+ T RSRGF FVT ++ Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 45.8 bits (107), Expect = 6e-05 Identities = 19/59 (32%), Positives = 33/59 (55%) Frame = +3 Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 + + G+++VG L + L FS+ G + +V ++ D+ T RSRGF FVT ++ Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 45.8 bits (107), Expect = 6e-05 Identities = 18/45 (40%), Positives = 30/45 (66%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 I++G LPY EL F + G ++ ++I+ DKIT +S+G+AF+ Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFI 153
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.4 bits (106), Expect = 7e-05 Identities = 19/53 (35%), Positives = 32/53 (60%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452 PA+ + ++VGN+PY T +L FSE G V +++YD+ T + +G+ F Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.4 bits (106), Expect = 7e-05 Identities = 19/53 (35%), Positives = 32/53 (60%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452 PA+ + ++VGN+PY T +L FSE G V +++YD+ T + +G+ F Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 45.4 bits (106), Expect = 7e-05 Identities = 19/53 (35%), Positives = 32/53 (60%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452 PA+ + ++VGN+PY T +L FSE G V +++YD+ T + +G+ F Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 45.4 bits (106), Expect = 7e-05 Identities = 19/54 (35%), Positives = 32/54 (59%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 P R+YVG+L + T L F G ++ +Q++ D T RS+G+ F+T + +E Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 45.4 bits (106), Expect = 7e-05 Identities = 19/54 (35%), Positives = 32/54 (59%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 P R+YVG+L + T L F G ++ +Q++ D T RS+G+ F+T + +E Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 45.1 bits (105), Expect = 1e-04 Identities = 20/58 (34%), Positives = 31/58 (53%) Frame = +3 Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 + E G+++VG L + L FS G + +V ++ D+ T RSRGF F+T E Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPE 58
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/47 (51%), Positives = 29/47 (61%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 R +VG L + AEL FS+ G V D +II D+ T RSRGF FVT Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVT 53
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 45.1 bits (105), Expect = 1e-04 Identities = 20/58 (34%), Positives = 31/58 (53%) Frame = +3 Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 + E G+++VG L + L FS G + +V ++ D+ T RSRGF F+T E Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPE 58
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L + F + G++ D ++ D T RSRGF FVT AT EE Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Score = 33.9 bits (76), Expect = 0.22 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = +3 Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 RP +I+VG + L F + G ++ ++I+ D+ + + RGFAFVT Sbjct: 96 RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L + F + G++ D ++ D T RSRGF FVT AT EE Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Score = 33.9 bits (76), Expect = 0.22 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = +3 Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 RP +I+VG + L F + G ++ ++I+ D+ + + RGFAFVT Sbjct: 96 RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L + F + G++ D ++ D T RSRGF FVT AT EE Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Score = 33.9 bits (76), Expect = 0.22 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = +3 Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 RP +I+VG + L F + G ++ ++I+ D+ + + RGFAFVT Sbjct: 96 RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L + F + G++ D ++ D T RSRGF FVT AT EE Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Score = 33.9 bits (76), Expect = 0.22 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = +3 Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 RP +I+VG + L F + G ++ ++I+ D+ + + RGFAFVT Sbjct: 96 RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 44.7 bits (104), Expect = 1e-04 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%) Frame = +3 Query: 279 PPRNRPALGQEPG---------RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITD 431 P R RP G + G +I+VG +P+ EL F + G V +V +IYD Sbjct: 92 PERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQ 151 Query: 432 RSRGFAFVT 458 R RGF F+T Sbjct: 152 RPRGFGFIT 160 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/49 (44%), Positives = 32/49 (65%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 E G+++VG L ++ T L + FS+ G V D I+ DK T++SRGF FV Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 44.7 bits (104), Expect = 1e-04 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%) Frame = +3 Query: 279 PPRNRPALGQEPG---------RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITD 431 P R RP G + G +I+VG +P+ EL F + G V +V +IYD Sbjct: 92 PERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQ 151 Query: 432 RSRGFAFVT 458 R RGF F+T Sbjct: 152 RPRGFGFIT 160 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/49 (44%), Positives = 32/49 (65%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 E G+++VG L ++ T L + FS+ G V D I+ DK T++SRGF FV Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 44.7 bits (104), Expect = 1e-04 Identities = 19/54 (35%), Positives = 32/54 (59%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 P R+YVG+L + T L F G +D++ ++ D T RS+G+ F+T + +E Sbjct: 262 PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 315
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/52 (40%), Positives = 31/52 (59%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464 E GR+++ NLP+ + E+ A F G+V V I DK T S+G AFV+ + Sbjct: 312 ESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFS 363 Score = 32.7 bits (73), Expect = 0.50 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +I + NLP+ T ++ FS G + V++ K + +RGF FV +T E Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLKSVRLP-KKFDNTTRGFGFVEYSTVRE 771
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Frame = +3 Query: 279 PPRNRPALGQEPG---RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449 PP + G +PG ++VG +P EL F +AG + D++++ D ++ ++RG+A Sbjct: 150 PPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYA 209 Query: 450 FVTMATAE 473 F+T E Sbjct: 210 FITFCGKE 217
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 44.3 bits (103), Expect = 2e-04 Identities = 17/45 (37%), Positives = 29/45 (64%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 I+VG LPY T ++ FS+ G + ++ ++ DK T +S+GF F+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFL 82
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/52 (44%), Positives = 29/52 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +YV NLP T T +L F + GS+ I+ DK+T R RG AFV EE Sbjct: 215 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 266
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/52 (44%), Positives = 29/52 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +YV NLP T T +L F + GS+ I+ DK+T R RG AFV EE Sbjct: 213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 264
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 43.9 bits (102), Expect = 2e-04 Identities = 22/47 (46%), Positives = 28/47 (59%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 R +VG L + L AFS+ G + D +II D+ T RSRGF FVT Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVT 53
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/52 (44%), Positives = 29/52 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +YV NLP T T EL F + G++ I+ DK+T R RG AFV EE Sbjct: 190 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREE 241
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 43.5 bits (101), Expect = 3e-04 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +3 Query: 282 PRNRPALGQE-PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P + P G P RI+VG + + ++L FS+ GSV +V+I+ D+ S+G+ FVT Sbjct: 21 PTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVT 79 Query: 459 MATAEE 476 T E+ Sbjct: 80 FETQED 85
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 43.5 bits (101), Expect = 3e-04 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +3 Query: 282 PRNRPALGQE-PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P + P G P RI+VG + + ++L FS+ GSV +V+I+ D+ S+G+ FVT Sbjct: 21 PTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVT 79 Query: 459 MATAEE 476 T E+ Sbjct: 80 FETQED 85
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 43.5 bits (101), Expect = 3e-04 Identities = 20/53 (37%), Positives = 32/53 (60%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L + F + G++ D ++ D T RSRGF FVT AT E+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEK 66 Score = 33.9 bits (76), Expect = 0.22 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = +3 Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 RP +I+VG + L F + G ++ ++I+ D+ + + RGFAFVT Sbjct: 96 RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/55 (38%), Positives = 34/55 (61%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 P R++V N+P+ F +L F + G V DV+II+++ S+GF FVTM ++ Sbjct: 152 PKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGFGFVTMERPQD 204
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Frame = +3 Query: 282 PRNRPALGQE-----PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGF 446 P N P G P RI+VG + + +L FS+ GSV +V+I+ D+ S+G+ Sbjct: 17 PLNNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGY 75 Query: 447 AFVTMATAEE 476 F+T T E+ Sbjct: 76 GFITFETQED 85
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 43.1 bits (100), Expect = 4e-04 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +3 Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 G+I+VG + E FS+ G++ D Q++ DK T +SRGF FVT +A+ Sbjct: 243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295 Score = 42.0 bits (97), Expect = 8e-04 Identities = 20/58 (34%), Positives = 35/58 (60%) Frame = +3 Query: 285 RNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 R++ L +E ++++G L + T L F + G+V D++I+ D T RSRGF F++ Sbjct: 149 RSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLS 206
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 43.1 bits (100), Expect = 4e-04 Identities = 16/45 (35%), Positives = 29/45 (64%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 I++G LPY T ++ FS+ G + ++ ++ DK T +S+GF F+ Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFL 82
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 43.1 bits (100), Expect = 4e-04 Identities = 20/56 (35%), Positives = 33/56 (58%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 +E GR+++ N+ YT T + FS G +++V I D T +S+GFA+V A+ Sbjct: 327 RETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNAD 382 Score = 33.1 bits (74), Expect = 0.38 Identities = 19/54 (35%), Positives = 28/54 (51%) Frame = +3 Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 G+I V NLP+ T ++ FS G + V+ + K +RGFAFV +E Sbjct: 752 GKIIVKNLPFEATRKDVFELFSSFGQLKSVR-VPKKFDKSARGFAFVEFLLPKE 804
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 42.7 bits (99), Expect = 5e-04 Identities = 22/52 (42%), Positives = 29/52 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +YV NLP T T EL F + G++ I+ DK+T + RG AFV EE Sbjct: 173 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREE 224
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 42.7 bits (99), Expect = 5e-04 Identities = 18/56 (32%), Positives = 33/56 (58%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 + G++++G L + L AF++ G + +V ++ D+ T RSRGF FVT ++ Sbjct: 3 DEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDD 58
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 42.7 bits (99), Expect = 5e-04 Identities = 23/47 (48%), Positives = 28/47 (59%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 R +VG L + L AFS+ G V D +II D+ T RSRGF FVT Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVT 55
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 42.7 bits (99), Expect = 5e-04 Identities = 24/54 (44%), Positives = 30/54 (55%) Frame = +3 Query: 297 ALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 A G R +VG L + L AF++ G V D +II D+ T RSRGF FVT Sbjct: 2 ASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVT 55
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 42.7 bits (99), Expect = 5e-04 Identities = 23/55 (41%), Positives = 32/55 (58%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 P RI+VG + T A+LT FS G+V +II D+ S+G+ FVT T +E Sbjct: 32 PNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQE 85
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 42.7 bits (99), Expect = 5e-04 Identities = 22/47 (46%), Positives = 28/47 (59%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 R +VG L + L AFS+ G + D +II D+ T RSRGF FVT Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVT 55
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 42.4 bits (98), Expect = 6e-04 Identities = 18/50 (36%), Positives = 32/50 (64%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM 461 PG++++G L L A F + G + ++ ++ D+ T++SRGFAFVT+ Sbjct: 7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTL 56
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 42.4 bits (98), Expect = 6e-04 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Frame = +3 Query: 282 PRNRPALGQEPGR----IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449 PR R + E R ++V L T+ EL F +AG V D QI+ DKI+ RS+G A Sbjct: 225 PRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVA 284 Query: 450 FV 455 +V Sbjct: 285 YV 286
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 42.4 bits (98), Expect = 6e-04 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 Q+ GR+++ N+ Y+ T + FS G + +V + D T S+GFA+V A EE Sbjct: 322 QKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEE 378 Score = 32.3 bits (72), Expect = 0.65 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = +3 Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 G+I V NLP+ T ++ F+ G + V+ + K +RGFAFV +E Sbjct: 738 GKIIVKNLPFEATRKDVFELFNSFGQLKSVR-VPKKFDKSARGFAFVEFVLPKE 790
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 42.4 bits (98), Expect = 6e-04 Identities = 20/55 (36%), Positives = 31/55 (56%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 + GR++V NL YT + +L FS G + ++ D +T + +GFAFVT E Sbjct: 398 DSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPE 452
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/49 (38%), Positives = 31/49 (63%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 PG++++G L L A F + G + +V ++ D+ T++SRGFAFVT Sbjct: 7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVT 55
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 42.4 bits (98), Expect = 6e-04 Identities = 16/46 (34%), Positives = 31/46 (67%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 R++V NLPY + ++L FS+ G ++++ + +D + S+GFA+V Sbjct: 302 RLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYV 347
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 42.0 bits (97), Expect = 8e-04 Identities = 17/57 (29%), Positives = 34/57 (59%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +E GR+++ N+ Y + + + FS+ G++++V I D T +S+GF +V E+ Sbjct: 307 EETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKED 363
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 42.0 bits (97), Expect = 8e-04 Identities = 18/49 (36%), Positives = 31/49 (63%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 PG++++G L L A F + G + ++ ++ D+ T++SRGFAFVT Sbjct: 7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVT 55
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 42.0 bits (97), Expect = 8e-04 Identities = 19/50 (38%), Positives = 29/50 (58%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +EP I+VG L ++ L F G V ++IY++ TDRSRG+ +V Sbjct: 165 EEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYV 214
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 42.0 bits (97), Expect = 8e-04 Identities = 21/52 (40%), Positives = 30/52 (57%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 R +VG L + L AF+ G V D ++I D+ T RSRGF FVT ++ + Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 42.0 bits (97), Expect = 8e-04 Identities = 19/47 (40%), Positives = 29/47 (61%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 ++++G L Y T L A F + G++ DV ++ D T RSRGF F+T Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFIT 78 Score = 36.2 bits (82), Expect = 0.045 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 P G +++VG L + F G++ D+ I+ DK T + RGFAFV Sbjct: 115 PNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFV 168
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/60 (35%), Positives = 33/60 (55%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 P + P +VGNL + T +L F E V ++++ D +T+RSRGF +V TA+ Sbjct: 87 PIPSEPPFTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETAD 144
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Frame = +3 Query: 282 PRNRPALGQE----PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449 P+ +P+ E P R++V N+P+ F +L F + G + DV+II+++ S+GF Sbjct: 101 PQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFG 158 Query: 450 FVTMATAEE 476 FVT + + Sbjct: 159 FVTFENSAD 167
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Frame = +3 Query: 282 PRNRPALGQE----PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449 P+ +P+ E P R++V N+P+ F +L F + G + DV+II+++ S+GF Sbjct: 102 PQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFG 159 Query: 450 FVTMATAEE 476 FVT + + Sbjct: 160 FVTFENSAD 168
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/50 (40%), Positives = 30/50 (60%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467 R +VG L + + L AF+ G + D ++I D+ T RSRGF FVT ++ Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSS 58
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 41.2 bits (95), Expect = 0.001 Identities = 19/51 (37%), Positives = 29/51 (56%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATA 470 ++++G L Y T L F + G + DV ++ D T RSRGF F+T + A Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRA 68 Score = 37.4 bits (85), Expect = 0.020 Identities = 19/55 (34%), Positives = 28/55 (50%) Frame = +3 Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 RP G +++VG + +L F + G+V I+ DK T + RGFAFV Sbjct: 100 RPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFV 154
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/52 (40%), Positives = 28/52 (53%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +YV NLP T T +L F + G + I+ DK+T + RG AFV EE Sbjct: 198 LYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREE 249
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/59 (37%), Positives = 32/59 (54%) Frame = +3 Query: 297 ALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 A +E ++++G L + T +L FS+ G V D + D IT RSRGF FV +E Sbjct: 91 AAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149 Score = 33.9 bits (76), Expect = 0.22 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +3 Query: 279 PPRNRPALGQEP-GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 P R + +EP +I+VG L ++ F G V+ +++ D T++ RGF F+ Sbjct: 169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 228 Query: 456 TMATAE 473 T E Sbjct: 229 TFKEEE 234
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/47 (44%), Positives = 28/47 (59%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 R +VG L + +L FS+ G V D +II D+ + RSRGF FVT Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVT 53
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/56 (37%), Positives = 31/56 (55%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 +E ++++G L + T +L FS+ G V D + D IT RSRGF FV +E Sbjct: 94 REEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149 Score = 33.9 bits (76), Expect = 0.22 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +3 Query: 279 PPRNRPALGQEP-GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 P R + +EP +I+VG L ++ F G V+ +++ D T++ RGF F+ Sbjct: 169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 228 Query: 456 TMATAE 473 T E Sbjct: 229 TFKEEE 234
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/56 (37%), Positives = 31/56 (55%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 +E ++++G L + T +L FS+ G V D + D IT RSRGF FV +E Sbjct: 92 REEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147 Score = 33.9 bits (76), Expect = 0.22 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +3 Query: 279 PPRNRPALGQEP-GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 P R + +EP +I+VG L ++ F G V+ +++ D T++ RGF F+ Sbjct: 167 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 226 Query: 456 TMATAE 473 T E Sbjct: 227 TFKEEE 232
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/47 (40%), Positives = 29/47 (61%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 ++++G L Y T L A F + G++ DV ++ D T RSRGF F+T Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFIT 71 Score = 33.9 bits (76), Expect = 0.22 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 P G +++VG L L F + G + V I+ DK T + RGFAF+ Sbjct: 108 PNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFI 161
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 40.4 bits (93), Expect = 0.002 Identities = 20/63 (31%), Positives = 33/63 (52%) Frame = +3 Query: 288 NRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467 + P ++ ++++G L + T L F + G + D ++ D T RSRGF FVT + Sbjct: 18 HEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSC 77 Query: 468 AEE 476 EE Sbjct: 78 VEE 80 Score = 33.1 bits (74), Expect = 0.38 Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = +3 Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 RP +I+VG + L F G ++ ++++ D+ + + RGFAFVT Sbjct: 110 RPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVT 165
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 40.4 bits (93), Expect = 0.002 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 ++++G L + A L AF+ G V D ++I D+ T RSRGF FV Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 +++VG L + T EL F + G ++ + + D T RSRGFAF+ E Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTE 108 Score = 37.0 bits (84), Expect = 0.026 Identities = 15/48 (31%), Positives = 29/48 (60%) Frame = +3 Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 G+I+VG L + E+ F + G++ +V++ +DK + +GF F+T Sbjct: 136 GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFIT 183
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 40.4 bits (93), Expect = 0.002 Identities = 17/47 (36%), Positives = 29/47 (61%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 ++++G LP T +L F+ G V +V I+YD+ +SRGF F++ Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLS 143 Score = 39.3 bits (90), Expect = 0.005 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464 E G+++VG L + T L+ F G + D ++ + + RSRGF FVT A Sbjct: 5 ERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFA 56
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 40.4 bits (93), Expect = 0.002 Identities = 22/58 (37%), Positives = 30/58 (51%) Frame = +3 Query: 285 RNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 +NR R+YV + T LT F++ G+V +II DK T + RGF FVT Sbjct: 104 KNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 161 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/53 (35%), Positives = 29/53 (54%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +I+VG L T + +S+ G + D+ ++ D T RSRGF FVT + E Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTE 76
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 40.4 bits (93), Expect = 0.002 Identities = 22/52 (42%), Positives = 28/52 (53%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +YVG L L AAF G + D+QI D T++ RGFAFV AE+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAED 59
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 40.4 bits (93), Expect = 0.002 Identities = 22/52 (42%), Positives = 28/52 (53%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +YVG L L AAF G + D+QI D T++ RGFAFV AE+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAED 59
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 40.4 bits (93), Expect = 0.002 Identities = 19/55 (34%), Positives = 33/55 (60%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 P R++V N+P+ F +L F + G + DV+II+++ S+GF FVT + + Sbjct: 120 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSAD 172
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 40.0 bits (92), Expect = 0.003 Identities = 19/53 (35%), Positives = 29/53 (54%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L F + G + D ++ D T RSRGF FVT + EE Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEE 80 Score = 30.8 bits (68), Expect = 1.9 Identities = 15/56 (26%), Positives = 27/56 (48%) Frame = +3 Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 RP +I+VG + L G ++ ++++ D+ + + RGFAFVT Sbjct: 110 RPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVT 165
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 40.0 bits (92), Expect = 0.003 Identities = 16/51 (31%), Positives = 31/51 (60%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 Q+ ++VG+L T ++ AAF+ G + D +++ D T +S+G+ FV+ Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 153
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 40.0 bits (92), Expect = 0.003 Identities = 19/49 (38%), Positives = 30/49 (61%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 PG++++G L L A F + G + +V +I D+ T +SRGFAF+T Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFIT 54
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 40.0 bits (92), Expect = 0.003 Identities = 17/45 (37%), Positives = 28/45 (62%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 ++VGNLPY + + F + GS+ V+I+ DK+T +GF +V Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYV 333
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 40.0 bits (92), Expect = 0.003 Identities = 19/57 (33%), Positives = 33/57 (57%) Frame = +3 Query: 285 RNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 R R A PG IY+G++P + +L F++ G+V +++ K T S+G+A+V Sbjct: 31 RKRKANALTPGVIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYV 87
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 40.0 bits (92), Expect = 0.003 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L F + G++ D ++ D T RSRGF FVT + EE Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88 Score = 33.5 bits (75), Expect = 0.29 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 +I+VG + L F + G ++ ++++ D+ + + RGFAFVT Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 40.0 bits (92), Expect = 0.003 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L F + G++ D ++ D T RSRGF FVT + EE Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88 Score = 33.5 bits (75), Expect = 0.29 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 +I+VG + L F + G ++ ++++ D+ + + RGFAFVT Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 40.0 bits (92), Expect = 0.003 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L F + G++ D ++ D T RSRGF FVT + EE Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88 Score = 33.5 bits (75), Expect = 0.29 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 +I+VG + L F + G ++ ++++ D+ + + RGFAFVT Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 39.7 bits (91), Expect = 0.004 Identities = 19/64 (29%), Positives = 35/64 (54%) Frame = +3 Query: 285 RNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464 +++ L + G IYV LP+ F EL+ F++ G + +V++ +K T SR + F+ Sbjct: 81 KDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFV 140 Query: 465 TAEE 476 E+ Sbjct: 141 NKED 144
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 + P YVGNLP+ ++ A F + S+ V+++ DK TD+ +GF +V Sbjct: 38 EPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYV 86
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 + P YVGNLP+ ++ A F + S+ V+++ DK TD+ +GF +V Sbjct: 38 EPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYV 86
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 39.7 bits (91), Expect = 0.004 Identities = 16/49 (32%), Positives = 29/49 (59%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 PG I+VG + + + EL+ FS+ G + +++IYDK G+ F++ Sbjct: 194 PGNIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFIS 242
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/42 (42%), Positives = 26/42 (61%) Frame = +3 Query: 351 TAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 T +L FS+ G + DV I+YD+ + RSRGFAFV ++ Sbjct: 130 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/42 (42%), Positives = 26/42 (61%) Frame = +3 Query: 351 TAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 T +L FS+ G + DV I+YD+ + RSRGFAFV ++ Sbjct: 130 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/42 (42%), Positives = 26/42 (61%) Frame = +3 Query: 351 TAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 T +L FS+ G + DV I+YD+ + RSRGFAFV ++ Sbjct: 130 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = +3 Query: 282 PRNRPALGQEPGR-IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P++ P + G ++V + EL FS+ G+V V+I+ + +T SRGF F++ Sbjct: 89 PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLS 148 Query: 459 MATAEE 476 +T EE Sbjct: 149 FSTVEE 154
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 39.3 bits (90), Expect = 0.005 Identities = 15/46 (32%), Positives = 29/46 (63%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 ++VG+L T ++ AAF+ G + D +++ D T +S+G+ FV+ Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 153
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 +++VG + L F E G +D ++II DK + + RGFAFVT Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVT 147 Score = 37.0 bits (84), Expect = 0.026 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L + + G++ D ++ D + RSRGF FVT + E Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNE 62
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 38.9 bits (89), Expect = 0.007 Identities = 16/51 (31%), Positives = 31/51 (60%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 +Y+G++PY T ++ S G V ++++++D T RS+G+AF+ E Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLE 70
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/37 (54%), Positives = 25/37 (67%) Frame = +3 Query: 363 LTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 L +AFS G V + +II D+ T RSRGF FVT +T E Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEE 39
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 38.5 bits (88), Expect = 0.009 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464 R++V NL Y +EL FS G ++++ + +D S+GFA+V A Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYA 344
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 38.5 bits (88), Expect = 0.009 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YV LP T T EL FS+ G + +I+ D++T SRG F+ Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 183 Score = 35.4 bits (80), Expect = 0.077 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 I+V NL + L F G+V++V++I D T++ +GF FVTM +E Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE 355
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 38.5 bits (88), Expect = 0.009 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YV LP T T EL FS+ G + +I+ D++T SRG F+ Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 178 Score = 35.4 bits (80), Expect = 0.077 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 I+V NL + L F G+V++V++I D T++ +GF FVTM +E Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE 350
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 38.5 bits (88), Expect = 0.009 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YV LP T T EL FS+ G + +I+ D++T SRG F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171 Score = 35.4 bits (80), Expect = 0.077 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 I+V NL + L F G+V++V++I D T++ +GF FVTM +E Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE 343
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 38.5 bits (88), Expect = 0.009 Identities = 14/46 (30%), Positives = 29/46 (63%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 ++VG+L T ++ +AF+ G + D +++ D T +S+G+ FV+ Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 161
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 38.5 bits (88), Expect = 0.009 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YV LP T T EL FS+ G + +I+ D++T SRG F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 171 Score = 34.3 bits (77), Expect = 0.17 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 I+V NL + L F G+V +V++I D T++ +GF FVTM +E Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 330
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 38.5 bits (88), Expect = 0.009 Identities = 14/46 (30%), Positives = 29/46 (63%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 ++VG+L T ++ +AF+ G + D +++ D T +S+G+ FV+ Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 144
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 38.5 bits (88), Expect = 0.009 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YV LP T T EL FS+ G + +I+ D++T SRG F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 171 Score = 34.3 bits (77), Expect = 0.17 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 I+V NL + L F G+V +V++I D T++ +GF FVTM +E Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 38.5 bits (88), Expect = 0.009 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YV LP T T EL FS+ G + +I+ D++T SRG F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 171 Score = 34.3 bits (77), Expect = 0.17 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 I+V NL + L F G+V +V++I D T++ +GF FVTM +E Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 38.5 bits (88), Expect = 0.009 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YV LP T T EL FS+ G + +I+ D++T SRG F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 171 Score = 34.3 bits (77), Expect = 0.17 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 I+V NL + L F G+V +V++I D T++ +GF FVTM +E Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +3 Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 RP + +++VG L +L FS+ G+V+ +II DK + + RGF FV Sbjct: 90 RPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV 144 Score = 33.5 bits (75), Expect = 0.29 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + + L F G++ D ++ + T RSR F FVT + EE Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 38.1 bits (87), Expect = 0.012 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Frame = +3 Query: 285 RNRPALGQ--EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 + RP GQ PG +YVG+LP +L + F + G V +++ K T S+G+ FV Sbjct: 33 KKRPQTGQTLSPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFV 91
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 38.1 bits (87), Expect = 0.012 Identities = 15/46 (32%), Positives = 27/46 (58%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 R+YVG++ + + AF+ G + + + +D IT + +GFAFV Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFV 176
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 38.1 bits (87), Expect = 0.012 Identities = 18/55 (32%), Positives = 32/55 (58%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 P RI+VG P + T EL F + +V DV+++ + +S+G+ F+T T ++ Sbjct: 66 PNRIFVGGFPTSTTETELREHFEKFFAVKDVKMV-KSLDGQSKGYGFITFETEDQ 119
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 38.1 bits (87), Expect = 0.012 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 ++VGNLPY + L F + GS+ V+I+ + +T RGF +V Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYV 331 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQ 407 ++VGNLP T +L + F E G V+ V+ Sbjct: 185 VFVGNLPVTCNKKKLKSFFKEYGQVESVR 213
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 38.1 bits (87), Expect = 0.012 Identities = 16/55 (29%), Positives = 30/55 (54%) Frame = +3 Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464 L + ++VGNL + T +L+ AF G + +++ D + R +GF +VT + Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 ++VG L + L F E G++ ++I D + RS+G+ +V T E Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 38.1 bits (87), Expect = 0.012 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 ++VGNLPY + L F + GS+ V+I+ + +T RGF +V Sbjct: 293 VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYV 337 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQ 407 ++VGNLP T +L + F E G V+ V+ Sbjct: 191 VFVGNLPVTCNKKKLKSFFKEYGQVESVR 219
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 38.1 bits (87), Expect = 0.012 Identities = 17/53 (32%), Positives = 30/53 (56%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L F + G++ D ++ D + RSRGF FVT + +E Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDE 67 Score = 34.7 bits (78), Expect = 0.13 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = +3 Query: 288 NRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 +RP +I+VG + L F + G ++ ++I+ D+ + + RGFAFVT Sbjct: 96 SRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 37.7 bits (86), Expect = 0.015 Identities = 17/48 (35%), Positives = 29/48 (60%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 PG IY+G++P +L FS+ G+V +++ K T S+G+A+V Sbjct: 40 PGVIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYV 87
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 37.7 bits (86), Expect = 0.015 Identities = 19/45 (42%), Positives = 27/45 (60%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YVG+LP + L FS AG V +++ D IT RS G+A+V Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYV 48 Score = 33.1 bits (74), Expect = 0.38 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +YV NL T L AFS G++ +++ D+ RS+GF FV A E Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASE 339
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 37.7 bits (86), Expect = 0.015 Identities = 16/49 (32%), Positives = 29/49 (59%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 + GR+++ N+ YT + FS G +++V + D T +S+GFA+V Sbjct: 343 QTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYV 391 Score = 32.3 bits (72), Expect = 0.65 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++ G+I V NLP+ T ++ F+ G + V+ + K +RGFAFV +E Sbjct: 760 KKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVR-VPKKFDKSARGFAFVEFLLPKE 815
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 37.7 bits (86), Expect = 0.015 Identities = 17/53 (32%), Positives = 29/53 (54%) Frame = +3 Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 GR+++ N+ Y T + FS G +++V + D T +S+GFA+V E Sbjct: 301 GRLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPE 353 Score = 32.7 bits (73), Expect = 0.50 Identities = 19/54 (35%), Positives = 27/54 (50%) Frame = +3 Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 G+I V NLP+ T ++ FS G + V+ + K +RGFAFV E Sbjct: 712 GKIIVKNLPFEATRKDVFELFSSFGQLKSVR-VPKKFDKSARGFAFVEFLLPSE 764
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 37.7 bits (86), Expect = 0.015 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATA 470 ++ G+++VG L + + +L F++ G V D I D T RSRGF F+ A Sbjct: 65 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDA 119 Score = 34.7 bits (78), Expect = 0.13 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Frame = +3 Query: 282 PRNRPALGQEP-GRIYVGNL-PYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 P+ A+ ++P +I+VG L P + T ++ F E G ++ +++ D ++ RGF F+ Sbjct: 140 PKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFI 199 Query: 456 TMATAE 473 T E Sbjct: 200 TFKEEE 205
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 37.4 bits (85), Expect = 0.020 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 ++ G+++VG L + + +L F++ G V D I D T RSRGF F+ Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFI 121 Score = 33.5 bits (75), Expect = 0.29 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Frame = +3 Query: 282 PRNRPALGQEP-GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P+ A+ ++P +I+VG L T ++ F + G ++ +++ D ++ RGF F+T Sbjct: 147 PKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFIT 206
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 37.4 bits (85), Expect = 0.020 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = +3 Query: 351 TAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 T +L FS G + V ++YD+ T RSRGFAFV Sbjct: 129 TERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 163
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 37.4 bits (85), Expect = 0.020 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +3 Query: 318 RIYVGNL-PYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 ++++G L PYT T L + + G V DV ++ D T RSRGF F+T Sbjct: 33 KLFIGGLAPYT-TEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFIT 79 Score = 33.1 bits (74), Expect = 0.38 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +++VG L L F + G+V V+++ DK T + RGFAFV Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFV 169
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 37.4 bits (85), Expect = 0.020 Identities = 14/51 (27%), Positives = 28/51 (54%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 ++VGN+PY + ++T F++ G V +++ D T +G+ F +E Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSE 59
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 37.4 bits (85), Expect = 0.020 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = +3 Query: 351 TAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 T +L FS G + V ++YD+ T RSRGFAFV Sbjct: 131 TERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 165
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 37.0 bits (84), Expect = 0.026 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 ++VGNL + L F + GS+D V+I+ D T+ +GFA++ Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYI 316
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 37.0 bits (84), Expect = 0.026 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 IYV N+ T EL FS+ G++ +++ D+ +S+GF FV +T EE Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEE 356
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 37.0 bits (84), Expect = 0.026 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L + + G + D ++ D + RSRGF FVT ++ E Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62 Score = 35.8 bits (81), Expect = 0.059 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 +++VG + L F E G +D ++II D+ + + RGF FVT Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 147
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 37.0 bits (84), Expect = 0.026 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L + + G + D ++ D + RSRGF FVT ++ E Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74 Score = 35.8 bits (81), Expect = 0.059 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 +++VG + L F E G +D ++II D+ + + RGF FVT Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 159
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 36.6 bits (83), Expect = 0.034 Identities = 20/52 (38%), Positives = 27/52 (51%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 IYVG L T L AF G + D+Q+ D + R RGFAF+ +E+ Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSED 59
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 36.6 bits (83), Expect = 0.034 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++++G L + T L + + G + D ++ D + RSRGF FVT + E Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNE 62 Score = 35.0 bits (79), Expect = 0.10 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 +++VG + L F E G ++ +II DK + + RGF FVT Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVT 147
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 36.6 bits (83), Expect = 0.034 Identities = 18/45 (40%), Positives = 27/45 (60%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YVG+L + + A L FS GSV +++ D IT S G+A+V Sbjct: 39 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYV 83
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 36.2 bits (82), Expect = 0.045 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = +3 Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 V NL Y + L F + G V DV I D+ T SRGFAFV Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 36.2 bits (82), Expect = 0.045 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YV LP T + E+ FS+ G + +I+ D++T SRG F+ Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171 Score = 35.4 bits (80), Expect = 0.077 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 I+V NL + L F G+V +V++I D T++ +GF FVTM +E Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 337
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 36.2 bits (82), Expect = 0.045 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 IY+GNL T ++ FSE G DV + D+ T S+GFA++ Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYL 77
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 36.2 bits (82), Expect = 0.045 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = +3 Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 V NL Y + L F + G V DV I D+ T SRGFAFV Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 59
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 36.2 bits (82), Expect = 0.045 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = +3 Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 V NL Y + L F + G V DV I D+ T SRGFAFV Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 59
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 36.2 bits (82), Expect = 0.045 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = +3 Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 V NL Y + L F + G V DV I D+ T SRGFAFV Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 59
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 36.2 bits (82), Expect = 0.045 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = +3 Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 V NL Y + L F + G V DV I D+ T SRGFAFV Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 59
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 36.2 bits (82), Expect = 0.045 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 PA + ++VGNL + L F GS++ V+I+ D T+ +GFA+V Sbjct: 221 PAPHDKQRSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYV 274
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 35.8 bits (81), Expect = 0.059 Identities = 19/54 (35%), Positives = 28/54 (51%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 PA + I+VGNL + L F G ++ V+II D T+ +GFA+V Sbjct: 272 PAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYV 325
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 35.8 bits (81), Expect = 0.059 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = +3 Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 V NLP EL F + G V + I DK+T +GFAFVT + ++ Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDD 229
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 35.8 bits (81), Expect = 0.059 Identities = 17/48 (35%), Positives = 28/48 (58%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 PG +YV +LP ++ + FS+ G+V ++ K T S+G+AFV Sbjct: 44 PGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFV 91
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 35.4 bits (80), Expect = 0.077 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 ++Y+G L L AFS V + +++ +K+T RSRG+ FV + + Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISED 83
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 35.4 bits (80), Expect = 0.077 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 I+V NL + L F G+V +V++I D T++ +GF FVTM +E Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 337 Score = 34.7 bits (78), Expect = 0.13 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YV LP T + E+ FS+ G + +I+ D+ T SRG F+ Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFI 171
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 35.4 bits (80), Expect = 0.077 Identities = 15/45 (33%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +Y+ LP T T ++ FS G + + +++ D+ T SRG AF+ Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152 Score = 35.0 bits (79), Expect = 0.10 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 I++ NL L F G+V +V++I D T++ +GF FVTM EE Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 35.4 bits (80), Expect = 0.077 Identities = 15/45 (33%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +Y+ LP T T ++ FS G + + +++ D+ T SRG AF+ Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152 Score = 35.0 bits (79), Expect = 0.10 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 I++ NL L F G+V +V++I D T++ +GF FVTM EE Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 35.4 bits (80), Expect = 0.077 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++VG LP + + +L FS+ G V ++ +K + RGF +VT + E+ Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLED 56
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 35.4 bits (80), Expect = 0.077 Identities = 15/61 (24%), Positives = 27/61 (44%) Frame = +3 Query: 273 YYPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452 Y PP + +++GN+ + T E+ F G + I DK T + + FA+ Sbjct: 87 YVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAY 146 Query: 453 V 455 + Sbjct: 147 I 147
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 35.4 bits (80), Expect = 0.077 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +3 Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 + NL Y T +L F G + DV I DK + +S+GF FV Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFV 65
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 35.0 bits (79), Expect = 0.10 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++VG LP + + +L FS+ G V ++ +K + RGF +VT + E+ Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLED 56
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 35.0 bits (79), Expect = 0.10 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = +3 Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464 PA ++VGNL + + L F G ++ V+I+ D T+ +GFA+V A Sbjct: 252 PAPHDRKRSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFA 308
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 35.0 bits (79), Expect = 0.10 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 IYVGNL + + +L FS+ GS++ + + D+ GF F+ T +E Sbjct: 48 IYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTPQE 99
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 35.0 bits (79), Expect = 0.10 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +E ++V N+PY T L FS+ GSV + DK T ++G AFV Sbjct: 287 REDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFV 336 Score = 29.6 bits (65), Expect = 4.2 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = +3 Query: 303 GQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 G + ++V ++P T +L FS + ++ D RSRGF FV+ A ++ Sbjct: 22 GLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDT-NKRSRGFGFVSFAVEDD 78
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 35.0 bits (79), Expect = 0.10 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 ++ V NLP+ T E+ FS G + ++I K SRGFAF +TA+E Sbjct: 705 KLVVKNLPFEVTKKEVRTLFSAYGKLVALRIP-KKFNQSSRGFAFAEFSTAKE 756 Score = 30.8 bits (68), Expect = 1.9 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAG-SVDDVQIIYDKITDRSRGFAFVTMATAEE 476 + RI+V NLP T T AE FS G V DV++I +R FV +AE+ Sbjct: 2 ESSSRIFVKNLPPTITEAEFRKHFSAEGRQVTDVKLI------PARHIGFVGYKSAED 53
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 34.7 bits (78), Expect = 0.13 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +3 Query: 306 QEPGRI-YVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +EP I +VGNL + T A+L F + G + V+++ + T + +GF FV Sbjct: 224 KEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFV 274
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 34.7 bits (78), Expect = 0.13 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467 +YVGNL + T ++ FS++G V + + DK+ + GF FV T Sbjct: 34 LYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYT 82
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 34.7 bits (78), Expect = 0.13 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P ++VG + E+ + F+ GSV +V+II D+ T S+G+ FV+ Sbjct: 39 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVS 86
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 34.7 bits (78), Expect = 0.13 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P ++VG + E+ + F+ GSV +V+II D+ T S+G+ FV+ Sbjct: 39 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVS 86
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 34.7 bits (78), Expect = 0.13 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P ++VG + E+ + F+ GSV +V+II D+ T S+G+ FV+ Sbjct: 39 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVS 86
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 34.7 bits (78), Expect = 0.13 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 ++VGNL + L F G ++ V+II D T+ +GFA+V Sbjct: 361 VFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYV 405
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 34.3 bits (77), Expect = 0.17 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P ++VG + E+ F+ GSV +V+II D+ T S+G+ FV+ Sbjct: 39 PNTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVS 86
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 34.3 bits (77), Expect = 0.17 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = +3 Query: 276 YPPRNRP-ALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452 + P N P A G ++V + Y T ++L F G + + ++Y K + + RG+AF Sbjct: 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148 Query: 453 V 455 + Sbjct: 149 I 149
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 34.3 bits (77), Expect = 0.17 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 ++VG L + L AFS G V+ V+I+ D T+ +GFA+V Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYV 320
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 34.3 bits (77), Expect = 0.17 Identities = 15/61 (24%), Positives = 27/61 (44%) Frame = +3 Query: 273 YYPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452 Y PP + +++GN+ + T E+ F G + I DK T + + FA+ Sbjct: 47 YVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAY 106 Query: 453 V 455 + Sbjct: 107 I 107
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 34.3 bits (77), Expect = 0.17 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = +3 Query: 276 YPPRNRP-ALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452 + P N P A G ++V + Y T ++L F G + + ++Y K + + RG+AF Sbjct: 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148 Query: 453 V 455 + Sbjct: 149 I 149
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 33.9 bits (76), Expect = 0.22 Identities = 18/57 (31%), Positives = 27/57 (47%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 Q+P +Y+ NLP + EL G V +I+ D + SRG F M + E+ Sbjct: 132 QDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEK 187
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 33.9 bits (76), Expect = 0.22 Identities = 15/59 (25%), Positives = 31/59 (52%) Frame = +3 Query: 279 PPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 P ++ A G ++V + Y T ++L F G + + ++Y+K + + RG+AF+ Sbjct: 91 PHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFI 149
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 33.9 bits (76), Expect = 0.22 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = +3 Query: 324 YVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +V L T A +L FS+ G V +++ + + +R + FVTM+TAEE Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEE 459
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 33.9 bits (76), Expect = 0.22 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +3 Query: 279 PPRNRPALGQEP-GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 P R + +EP +I+VG L ++ F G V+ +++ D T++ RGF F+ Sbjct: 21 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 80 Query: 456 TMATAE 473 T E Sbjct: 81 TFKEEE 86
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 33.9 bits (76), Expect = 0.22 Identities = 18/57 (31%), Positives = 27/57 (47%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 Q+P +Y+ NLP + EL G V +I+ D + SRG F M + E+ Sbjct: 134 QDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGASRGVGFARMESTEK 189
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 33.5 bits (75), Expect = 0.29 Identities = 18/57 (31%), Positives = 27/57 (47%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 Q+P +Y+ NLP + EL G V +I+ D + SRG F M + E+ Sbjct: 138 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEK 193
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 33.5 bits (75), Expect = 0.29 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +3 Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 + NLP +FT E G+++ ++Y ++T S+G+ FV Sbjct: 135 ITNLPISFTLEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFV 177
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 33.5 bits (75), Expect = 0.29 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +3 Query: 324 YVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +V L T A +L FS G V +++ + + +R + FVTM+TAEE Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEE 481
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 33.5 bits (75), Expect = 0.29 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +I + NLP+ T ++ F GS+ V++ K SRGFAF +A+E Sbjct: 704 KILIKNLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKE 755 Score = 33.5 bits (75), Expect = 0.29 Identities = 16/56 (28%), Positives = 30/56 (53%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 ++ GR+++ NL YT + FS+ G +++V + + T + +GFA V E Sbjct: 298 RKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPE 353
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 33.5 bits (75), Expect = 0.29 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +3 Query: 279 PPRNRPALGQEP-GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 P R + +EP +I+VG L ++ F G V+ +++ D T++ RGF F+ Sbjct: 159 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 218 Query: 456 TMATAE 473 T E Sbjct: 219 TFNQEE 224
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 33.1 bits (74), Expect = 0.38 Identities = 17/57 (29%), Positives = 27/57 (47%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 Q+P +Y+ NLP + EL G V +++ D + SRG F M + E+ Sbjct: 138 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDS-SGASRGVGFARMESTEK 193
>RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif protein 5)| (Putative tumor suppressor LUCA15) (G15 protein) (NY-REN-9 antigen) Length = 815 Score = 33.1 bits (74), Expect = 0.38 Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Frame = +3 Query: 339 PYTFTAAELTAAFSEAG-SVDDVQIIYDKITDRSRGFAFVTMATA 470 P+T + +TA A +V+++++I DK T ++RGFAFV +++A Sbjct: 240 PHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSA 284
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 33.1 bits (74), Expect = 0.38 Identities = 12/43 (27%), Positives = 25/43 (58%) Frame = +3 Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 + N+P +FT+ E G+++ ++Y ++T S+G+ FV Sbjct: 146 ITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFV 188
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 33.1 bits (74), Expect = 0.38 Identities = 15/45 (33%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YVGNL + T ++ FS++G + + + DK+ + GF FV Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 33.1 bits (74), Expect = 0.38 Identities = 15/45 (33%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YVGNL + T ++ FS++G + + + DK+ + GF FV Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 33.1 bits (74), Expect = 0.38 Identities = 15/45 (33%), Positives = 26/45 (57%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YVGNL + T ++ FS++G + + + DK+ + GF FV Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 33.1 bits (74), Expect = 0.38 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +3 Query: 285 RNRPALGQEPG--RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 R R G P +YV NLP T EL F + G + ++ D+ + SR F FV Sbjct: 213 RARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVN 271 Query: 459 MATAE 473 + E Sbjct: 272 FVSPE 276
>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein| Length = 124 Score = 33.1 bits (74), Expect = 0.38 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +YV NLP+ T+ E+ F + G++ ++I DK T +G AFV Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAFV 62
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 32.7 bits (73), Expect = 0.50 Identities = 18/55 (32%), Positives = 31/55 (56%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 P +++GNL + AEL A SE + +D+ ++ D T +R F +V +AE+ Sbjct: 306 PFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVV-DVRTGTNRKFGYVDFESAED 359
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 32.7 bits (73), Expect = 0.50 Identities = 20/66 (30%), Positives = 34/66 (51%) Frame = +3 Query: 276 YPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 Y R +G +++VG+L T E+ F + G V+DV ++ D+ +SRG FV Sbjct: 198 YADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFV 256 Query: 456 TMATAE 473 ++ E Sbjct: 257 KYSSKE 262
>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein| Length = 121 Score = 32.7 bits (73), Expect = 0.50 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = +3 Query: 285 RNRPALGQEPGRI-YVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 RN L E R+ YV NLPY T+ E+ F + G++ +++ T +RG AFV Sbjct: 4 RNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRV---GNTPETRGTAFV 58
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 32.7 bits (73), Expect = 0.50 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 I V NL +L F GS+ + + DK T +S+GFAF++ E+ Sbjct: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 32.7 bits (73), Expect = 0.50 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 I V NL +L F GS+ + + DK T +S+GFAF++ E+ Sbjct: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 32.7 bits (73), Expect = 0.50 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Frame = +3 Query: 288 NRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSR----GFAFV 455 N PA + R++VG L + +E+ + F G+V V I + ++ +R G AFV Sbjct: 35 NTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFV 94 Query: 456 TMATAEE 476 T E+ Sbjct: 95 TFNNQED 101
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 32.7 bits (73), Expect = 0.50 Identities = 18/53 (33%), Positives = 29/53 (54%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 RI++ YT + + L FS G + D+ ++ DK T S+G AFV A + + Sbjct: 27 RIFLVISKYT-SESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/56 (28%), Positives = 30/56 (53%) Frame = +3 Query: 288 NRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +R +E RI+V +P ++T +L F G ++ +I +K+T S+G +V Sbjct: 112 HRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYV 166
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 32.3 bits (72), Expect = 0.65 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467 R++VGNLP T E+ F + G +V I DK GF F+ + T Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLET 118
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 32.3 bits (72), Expect = 0.65 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467 R++VGNLP T E+ F + G +V I DK GF F+ + T Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLET 118
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 32.3 bits (72), Expect = 0.65 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P ++VG + E+ + F GSV +V+II ++ T S+G+ FV+ Sbjct: 39 PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 86
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 32.3 bits (72), Expect = 0.65 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +3 Query: 303 GQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 G E +++ +LP F +L F G+V ++ DK T+ S+ F FV+ Sbjct: 397 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 448
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 32.3 bits (72), Expect = 0.65 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +3 Query: 303 GQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 G E +++ +LP F +L F G+V ++ DK T+ S+ F FV+ Sbjct: 397 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 448
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 32.3 bits (72), Expect = 0.65 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +Y+ NL T +L FS GS+ +++ + RS+GF FV ++ EE Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEE 345
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 32.3 bits (72), Expect = 0.65 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467 R++VGNLP T E+ F + G +V I DK GF F+ + T Sbjct: 77 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLET 120
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 32.3 bits (72), Expect = 0.65 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P ++VG + E+ + F GSV +V+II ++ T S+G+ FV+ Sbjct: 39 PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 86
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 32.3 bits (72), Expect = 0.65 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P ++VG + E+ + F GSV +V+II ++ T S+G+ FV+ Sbjct: 369 PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 416 Score = 32.3 bits (72), Expect = 0.65 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P ++VG + E+ + F GSV +V+II ++ T S+G+ FV+ Sbjct: 204 PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 251 Score = 32.3 bits (72), Expect = 0.65 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P ++VG + E+ + F GSV +V+II ++ T S+G+ FV+ Sbjct: 39 PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 86
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 32.3 bits (72), Expect = 0.65 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467 R++VGNLP T E+ F + G +V I DK GF F+ + T Sbjct: 80 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLET 123
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 32.3 bits (72), Expect = 0.65 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 RI++ YT + L FS G + D+ ++ DK T S+G AFV A + + Sbjct: 27 RIFLVISKYT-PESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = +3 Query: 288 NRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +R +E RI+V +P ++T +L F G ++ II +K+T S+G +V Sbjct: 112 HRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYV 166
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 32.3 bits (72), Expect = 0.65 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P ++VG + E+ + F GSV +V+II ++ T S+G+ FV+ Sbjct: 204 PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 251 Score = 32.3 bits (72), Expect = 0.65 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458 P ++VG + E+ + F GSV +V+II ++ T S+G+ FV+ Sbjct: 39 PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 86
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 32.3 bits (72), Expect = 0.65 Identities = 11/45 (24%), Positives = 25/45 (55%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 I+VGN+ T ++ F + G + + ++YD+ T +G+ ++ Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYI 110
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 32.0 bits (71), Expect = 0.85 Identities = 18/52 (34%), Positives = 26/52 (50%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +YVGNLP E+ FS+ G V + + K+ R G+AFV A + Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARD 57
>POF_DROME (Q9W123) Protein painting of fourth (Zeste-interacting protein 16)| (Zip16 protein) Length = 495 Score = 32.0 bits (71), Expect = 0.85 Identities = 19/56 (33%), Positives = 33/56 (58%) Frame = +3 Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +P +YVGN+P+ T + + A F+ A VD + +K R+R +AFV A+ ++ Sbjct: 213 DPCSLYVGNIPFNMTTSAIKAYFANAMRVDIGVLKREK---RAR-YAFVRYASPDQ 264
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 32.0 bits (71), Expect = 0.85 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = +3 Query: 279 PPRNRPALGQEPG-RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 PP + E G I++G LP EL + G + +++++ D +RG+AFV Sbjct: 43 PPPGWDSTPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFV 101 Query: 456 TMATAEE 476 T + +E Sbjct: 102 TFSNKQE 108
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 32.0 bits (71), Expect = 0.85 Identities = 17/53 (32%), Positives = 30/53 (56%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 R++VGNL L AFSE S+ +++ D+ ++RGF FV+ +++ Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQ 82
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 32.0 bits (71), Expect = 0.85 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 G +Y+G+LP T + + + ++ G + ++ K T S+G+AFV Sbjct: 47 GVVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFV 93
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 32.0 bits (71), Expect = 0.85 Identities = 20/61 (32%), Positives = 31/61 (50%) Frame = +3 Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATA 470 R LG + +I+V NLP+ T +L FS+ G V +I + +S+G V +A Sbjct: 506 RDRLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME--NGKSKGCGTVRFESA 563 Query: 471 E 473 E Sbjct: 564 E 564
>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein| Length = 138 Score = 31.6 bits (70), Expect = 1.1 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Frame = +3 Query: 285 RNRPA-LGQEPGRI-YVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +NR A L E RI Y+ NLPY T E+ F + G+V +++ T +RG AFV Sbjct: 7 QNRGAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRV---GNTAETRGTAFV 62
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 31.6 bits (70), Expect = 1.1 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 12/74 (16%) Frame = +3 Query: 273 YYPPRNRPALGQEPG------------RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIY 416 Y P R G+E G + V NL EL F G + V + Sbjct: 176 YIAPHLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAK 235 Query: 417 DKITDRSRGFAFVT 458 DK T R++GFAFV+ Sbjct: 236 DKETGRAKGFAFVS 249
>CWC2_YARLI (Q6C007) Pre-mRNA-splicing factor CWC2| Length = 382 Score = 31.6 bits (70), Expect = 1.1 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +3 Query: 315 GRIYVGNLPYTFTAAELTAA-FSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467 GRI+V + E+ + FSE G VD +++++DK G AFVT AT Sbjct: 191 GRIHVSDAAKAGALDEIVSRHFSEWGDVDRIRVLHDK------GVAFVTYAT 236
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 31.6 bits (70), Expect = 1.1 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 Q+ + V LP+ T +L FS G V VQ+ D T S+GF FV E Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE 156
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 363 LTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 L FS G + D+ ++ DK T S+G AFV A + + Sbjct: 41 LRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQ 78 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = +3 Query: 288 NRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 +R +E RI+V +P ++T +L F G ++ II +K+T S+G +V Sbjct: 112 HRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYV 166
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +3 Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 P +++GNL + AEL A SE + +D+ + D T +R F +V +AE+ Sbjct: 309 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAAV-DVRTGTNRKFGYVDFESAED 362
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +3 Query: 279 PPRNRPALGQEPG-RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 PP E G I++G LP EL + G + +++++ D +RG+AFV Sbjct: 43 PPPGWDTTPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFV 101 Query: 456 TMATAEE 476 T + +E Sbjct: 102 TFSNKQE 108
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +3 Query: 279 PPRNRPALGQEPG-RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 PP A E G I++G LP EL + G + +++++ D +RG+AFV Sbjct: 43 PPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFV 101 Query: 456 TMATAEE 476 T + E Sbjct: 102 TFSNKVE 108
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +3 Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473 Q+ + V LP+ T +L FS G V VQ+ D T S+GF FV E Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE 156
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +3 Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +I+VGNL TA E+ + FS+ G + + I+ + F FV M + E Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSE 47
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 30.8 bits (68), Expect = 1.9 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = +3 Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476 +YVG L + L F +AG V + + D++T + +G+ FV + E+ Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 30.8 bits (68), Expect = 1.9 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +3 Query: 279 PPRNRPALGQEPG-RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 PP A E G I++G LP EL + G + +++++ D +RG+AFV Sbjct: 43 PPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFV 101 Query: 456 TMATAEE 476 T + E Sbjct: 102 TFSNKLE 108
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 30.8 bits (68), Expect = 1.9 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +3 Query: 351 TAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455 T ++ F++ G ++ +Q++ D T RSRGF F+ Sbjct: 117 TQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFI 151 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.123 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,982,743 Number of Sequences: 219361 Number of extensions: 620849 Number of successful extensions: 2508 Number of sequences better than 10.0: 301 Number of HSP's better than 10.0 without gapping: 2346 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2502 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)