ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basde01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL929441.37| Mouse DNA sequence from clone RP23-418E20 on chromosome 4, complete sequence Length = 202920 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 552 ccaggatgctccccaagtttgt 573 |||||||||||||||||||||| Sbjct: 127830 ccaggatgctccccaagtttgt 127809
>gb|AY112463.1| Zea mays CL22709_1 mRNA sequence Length = 820 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 420 aggcgacgcggcgcatgacctt 441 |||||||||||||||||||||| Sbjct: 464 aggcgacgcggcgcatgacctt 485
>ref|NM_187740.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2655 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 340 agccgccgccgccgctgaggacggccatg 368 ||||||||||||||| |||| |||||||| Sbjct: 2473 agccgccgccgccgccgaggtcggccatg 2445
>gb|AC158548.10| Mus musculus chromosome 5, clone RP23-258F17, complete sequence Length = 227065 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 aagaagtagaacttcccagct 41 ||||||||||||||||||||| Sbjct: 15494 aagaagtagaacttcccagct 15474
>ref|XM_367470.1| Magnaporthe grisea 70-15 chromosome III predicted protein (MG07381.4) partial mRNA Length = 852 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 341 gccgccgccgccgctgaggacggcc 365 |||||||||||||||| |||||||| Sbjct: 717 gccgccgccgccgctgcggacggcc 693
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 340 agccgccgccgccgctgaggacggccatg 368 ||||||||||||||| |||| |||||||| Sbjct: 3495608 agccgccgccgccgccgaggtcggccatg 3495636 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gtcacagccgccgccgccgc 354 |||||||||||||||||||| Sbjct: 33113942 gtcacagccgccgccgccgc 33113923 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gccgccgccgccgctgagga 360 |||||||||||||||||||| Sbjct: 9452836 gccgccgccgccgctgagga 9452855
>ref|XM_785666.1| PREDICTED: Strongylocentrotus purpuratus similar to solute carrier family 35, member E1 (LOC585860), mRNA Length = 1035 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 521 gcgttcaccgtcctcaacctggtga 545 ||||||| ||||||||||||||||| Sbjct: 742 gcgttcagcgtcctcaacctggtga 766
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 386 cggttcgtcggcgccggcgat 406 ||||||||||||||||||||| Sbjct: 68256 cggttcgtcggcgccggcgat 68236
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 386 cggttcgtcggcgccggcgat 406 ||||||||||||||||||||| Sbjct: 340083 cggttcgtcggcgccggcgat 340063
>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12, complete sequence Length = 103330 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 340 agccgccgccgccgctgaggacggccatg 368 ||||||||||||||| |||| |||||||| Sbjct: 14767 agccgccgccgccgccgaggtcggccatg 14739
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 340 agccgccgccgccgctgaggacggccatg 368 ||||||||||||||| |||| |||||||| Sbjct: 3495719 agccgccgccgccgccgaggtcggccatg 3495747 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gtcacagccgccgccgccgc 354 |||||||||||||||||||| Sbjct: 33204452 gtcacagccgccgccgccgc 33204433 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gccgccgccgccgctgagga 360 |||||||||||||||||||| Sbjct: 9450957 gccgccgccgccgctgagga 9450976
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 340 agccgccgccgccgctgaggacggccatg 368 ||||||||||||||| |||| |||||||| Sbjct: 13261 agccgccgccgccgccgaggtcggccatg 13289
>dbj|AK105752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C01, full insert sequence Length = 2414 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 340 agccgccgccgccgctgaggacggccatg 368 ||||||||||||||| |||| |||||||| Sbjct: 1895 agccgccgccgccgccgaggtcggccatg 1867
>dbj|AK099829.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104D06, full insert sequence Length = 2698 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 340 agccgccgccgccgctgaggacggccatg 368 ||||||||||||||| |||| |||||||| Sbjct: 2137 agccgccgccgccgccgaggtcggccatg 2109
>dbj|AK068034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131E13, full insert sequence Length = 2636 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 340 agccgccgccgccgctgaggacggccatg 368 ||||||||||||||| |||| |||||||| Sbjct: 2075 agccgccgccgccgccgaggtcggccatg 2047
>gb|AC023481.6| Homo sapiens chromosome 3 clone RP11-424H6 map 3p, complete sequence Length = 184065 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 gtggtagaagaagtagaactt 34 ||||||||||||||||||||| Sbjct: 158163 gtggtagaagaagtagaactt 158183
>gb|AC087859.3| Homo sapiens chromosome 3 clone RP11-34L16 map 3p, complete sequence Length = 151927 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 gtggtagaagaagtagaactt 34 ||||||||||||||||||||| Sbjct: 123273 gtggtagaagaagtagaactt 123253
>gb|AC102914.9| Mus musculus chromosome 15, clone RP24-274M4, complete sequence Length = 185807 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 agaacttcccagctgcatcgctct 51 ||||||||||||||| |||||||| Sbjct: 32319 agaacttcccagctgtatcgctct 32342
>ref|NM_185320.1| Oryza sativa (japonica cultivar-group), mRNA Length = 903 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 633 cacagccgccgccgccgctg 614
>gb|AC166162.6| Mus musculus BAC clone RP23-436K10 from chromosome 6, complete sequence Length = 181038 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 cacagtcacagccgccgccgccgc 354 ||||| |||||||||||||||||| Sbjct: 74924 cacagccacagccgccgccgccgc 74901
>ref|XM_509258.1| PREDICTED: Pan troglodytes similar to hypothetical protein MGC26598 (LOC452117), mRNA Length = 1065 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 cacagtcacagccgccgccgccgc 354 ||||| |||||||||||||||||| Sbjct: 67 cacagccacagccgccgccgccgc 44
>ref|NM_185028.1| Oryza sativa (japonica cultivar-group), mRNA Length = 459 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gtcacagccgccgccgccgc 354 |||||||||||||||||||| Sbjct: 352 gtcacagccgccgccgccgc 371
>ref|XM_465329.1| Oryza sativa (japonica cultivar-group), mRNA Length = 372 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 292 cacagccgccgccgccgctg 273
>ref|XM_450947.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1002 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 cagccgccgccgccgctgaggacg 362 ||||||||||||||| |||||||| Sbjct: 950 cagccgccgccgccggtgaggacg 927
>ref|NM_006874.2| Homo sapiens E74-like factor 2 (ets domain transcription factor) (ELF2), transcript variant 2, mRNA Length = 3171 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 cacagtcacagccgccgccgccgc 354 ||||| |||||||||||||||||| Sbjct: 22 cacagccacagccgccgccgccgc 45
>gb|BT018252.1| Zea mays clone EL01T0201B04.c mRNA sequence Length = 1299 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gtcacagccgccgccgccgc 354 |||||||||||||||||||| Sbjct: 392 gtcacagccgccgccgccgc 373
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 128037 cacagccgccgccgccgctg 128056
>gb|AC093198.3| Drosophila melanogaster clone BACR03G24, complete sequence Length = 182901 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 122051 cacagccgccgccgccgctg 122070
>gb|AC016158.4| Drosophila melanogaster clone BACR38H07, complete sequence Length = 172841 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 cacagtcacagccgccgccgccgc 354 ||||| |||||||||||||||||| Sbjct: 98820 cacaggcacagccgccgccgccgc 98797
>gb|AC006402.12| Drosophila melanogaster clone BACR08D17, complete sequence Length = 174735 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 60761 cacagccgccgccgccgctg 60780
>ref|XM_369573.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG05891.4) partial mRNA Length = 2169 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gtcacagccgccgccgccgc 354 |||||||||||||||||||| Sbjct: 777 gtcacagccgccgccgccgc 796
>ref|XM_415658.1| PREDICTED: Gallus gallus similar to Joined to JAZF1 (LOC417406), mRNA Length = 3066 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gccgccgccgccgctgagga 360 |||||||||||||||||||| Sbjct: 1028 gccgccgccgccgctgagga 1009
>gb|BC058578.1| Mus musculus chromodomain helicase DNA binding protein 4, mRNA (cDNA clone MGC:68269 IMAGE:6489649), complete cds Length = 6438 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 cacagtcacagccgccgccgccgc 354 ||||| |||||||||||||||||| Sbjct: 864 cacagccacagccgccgccgccgc 841
>ref|NM_145979.1| Mus musculus chromodomain helicase DNA binding protein 4 (Chd4), mRNA Length = 6438 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 cacagtcacagccgccgccgccgc 354 ||||| |||||||||||||||||| Sbjct: 864 cacagccacagccgccgccgccgc 841
>ref|NM_007235.3| Homo sapiens exportin, tRNA (nuclear export receptor for tRNAs) (XPOT), mRNA Length = 3881 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 cagccgccgccgccgctgag 358 |||||||||||||||||||| Sbjct: 30 cagccgccgccgccgctgag 11
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 70618 cacagccgccgccgccgctg 70637
>gb|AC123867.4| Mus musculus BAC clone RP23-127O13 from chromosome 14, complete sequence Length = 216834 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 196456 cacagccgccgccgccgctg 196437
>ref|XM_505218.1| Yarrowia lipolytica CLIB122, YALI0F09669g predicted mRNA Length = 663 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gccgccgccgccgctgagga 360 |||||||||||||||||||| Sbjct: 250 gccgccgccgccgctgagga 269
>emb|AL049175.12|HS1110P6 Human DNA sequence from clone RP5-1110P6 on chromosome Xq21.1-22.3 Contains a CpG island, complete sequence Length = 40033 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 gaagtagaacttcccagctgcatc 46 ||||||| |||||||||||||||| Sbjct: 12331 gaagtagcacttcccagctgcatc 12308
>gb|BC034951.1| Homo sapiens E74-like factor 2 (ets domain transcription factor), transcript variant 2, mRNA (cDNA clone MGC:26206 IMAGE:4821608), complete cds Length = 2630 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 cacagtcacagccgccgccgccgc 354 ||||| |||||||||||||||||| Sbjct: 27 cacagccacagccgccgccgccgc 50
>gb|AC131374.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0008A05, complete sequence Length = 124366 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gtcacagccgccgccgccgc 354 |||||||||||||||||||| Sbjct: 86696 gtcacagccgccgccgccgc 86677
>gb|AC151836.3| Mus musculus BAC clone RP23-359F5 from chromosome 14, complete sequence Length = 230502 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 74999 cacagccgccgccgccgctg 74980
>dbj|AK220473.1| Mus musculus mRNA for mKIAA4075 protein Length = 6337 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 cacagtcacagccgccgccgccgc 354 ||||| |||||||||||||||||| Sbjct: 772 cacagccacagccgccgccgccgc 749
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 451 tgacgctgctccatgcatgcgtgt 474 ||||| |||||||||||||||||| Sbjct: 2411381 tgacgttgctccatgcatgcgtgt 2411404
>gb|AC093602.5| Homo sapiens BAC clone RP11-371F15 from 4, complete sequence Length = 120834 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 cacagtcacagccgccgccgccgc 354 ||||| |||||||||||||||||| Sbjct: 84428 cacagccacagccgccgccgccgc 84405
>ref|NM_080626.5| Homo sapiens BRI3 binding protein (BRI3BP), mRNA Length = 1272 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 27 cacagccgccgccgccgctg 8
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccggcgatggcaaggctgga 418 |||||||||||||||||||| Sbjct: 4216854 ccggcgatggcaaggctgga 4216873
>ref|NM_136191.2| Drosophila melanogaster CG31688-RA (CG31688), mRNA Length = 3211 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 409 cacagccgccgccgccgctg 428
>dbj|AK145532.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0011E07 product:chromodomain helicase DNA binding protein 4, full insert sequence Length = 1190 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 cacagtcacagccgccgccgccgc 354 ||||| |||||||||||||||||| Sbjct: 851 cacagccacagccgccgccgccgc 828
>gb|AY075513.1| Drosophila melanogaster RE64176 full length cDNA Length = 3395 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 409 cacagccgccgccgccgctg 428
>dbj|AK147695.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1109D08 product:chromodomain helicase DNA binding protein 4, full insert sequence Length = 6660 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 cacagtcacagccgccgccgccgc 354 ||||| |||||||||||||||||| Sbjct: 1047 cacagccacagccgccgccgccgc 1024
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence Length = 187589 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gccgccgccgccgctgagga 360 |||||||||||||||||||| Sbjct: 150236 gccgccgccgccgctgagga 150255
>ref|XM_944862.1| PREDICTED: Homo sapiens similar to growth factor receptor-bound protein 2 (LOC654200), mRNA Length = 624 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 282 cacagccgccgccgccgctg 263
>ref|XM_931425.1| PREDICTED: Homo sapiens similar to growth factor receptor-bound protein 2 (LOC653241), mRNA Length = 612 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 270 cacagccgccgccgccgctg 251
>gb|AC091749.8| Oryza sativa chromosome 10 BAC OSJNBb0008A05 genomic sequence, complete sequence Length = 150465 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gtcacagccgccgccgccgc 354 |||||||||||||||||||| Sbjct: 137161 gtcacagccgccgccgccgc 137142
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 546 acagcgccaggatgctcccc 565 |||||||||||||||||||| Sbjct: 4817219 acagcgccaggatgctcccc 4817238
>ref|NM_203506.1| Homo sapiens growth factor receptor-bound protein 2 (GRB2), transcript variant 2, mRNA Length = 3139 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 33 cacagccgccgccgccgctg 14
>ref|NM_002086.3| Homo sapiens growth factor receptor-bound protein 2 (GRB2), transcript variant 1, mRNA Length = 3317 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 88 cacagccgccgccgccgctg 69
>emb|CR406204.1| Gallus gallus finished cDNA, clone ChEST848n23 Length = 1019 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gccgccgccgccgctgagga 360 |||||||||||||||||||| Sbjct: 44 gccgccgccgccgctgagga 25
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 13167160 cacagccgccgccgccgctg 13167179
>gb|AC100787.17| Homo sapiens chromosome 17, clone CTD-2589J4, complete sequence Length = 233062 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 56985 cacagccgccgccgccgctg 57004
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 336 tcacagccgccgccgccgctgagg 359 |||| ||||||||||||||||||| Sbjct: 27332330 tcaccgccgccgccgccgctgagg 27332353
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gtcacagccgccgccgccgc 354 |||||||||||||||||||| Sbjct: 8882089 gtcacagccgccgccgccgc 8882070
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 339 cagccgccgccgccgctgaggacg 362 ||||||||||||||| |||||||| Sbjct: 17731111 cagccgccgccgccggtgaggacg 17731134 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 tcacagccgccgccgccgctgagg 359 |||| ||||||||||||||||||| Sbjct: 6542517 tcaccgccgccgccgccgctgagg 6542494
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 cagccgccgccgccgctgag 358 |||||||||||||||||||| Sbjct: 18517430 cagccgccgccgccgctgag 18517411
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 10635794 cacagccgccgccgccgctg 10635813 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 341 gccgccgccgccgctgaggacggccatg 368 |||||||||||||| | ||||||||||| Sbjct: 5848816 gccgccgccgccgcagcggacggccatg 5848843 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 344385 cacagccgccgccgccgctg 344366
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 20814813 cacagccgccgccgccgctg 20814832
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gtcacagccgccgccgccgc 354 |||||||||||||||||||| Sbjct: 33209290 gtcacagccgccgccgccgc 33209271 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 13463655 cacagccgccgccgccgctg 13463636 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 atgacgacgtcgacgacgcg 523 |||||||||||||||||||| Sbjct: 10201514 atgacgacgtcgacgacgcg 10201533
>gb|AC093719.26| Homo sapiens 12 BAC RP11-549I9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 79925 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 13893 cacagccgccgccgccgctg 13912
>emb|AL731622.1|OSJN00265 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093P23, complete sequence Length = 165683 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 99370 cacagccgccgccgccgctg 99389
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete sequence Length = 144487 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gtcacagccgccgccgccgc 354 |||||||||||||||||||| Sbjct: 130613 gtcacagccgccgccgccgc 130632
>gb|AC011933.17| Homo sapiens chromosome 17, clone RP11-16C1, complete sequence Length = 153211 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 21088 cacagccgccgccgccgctg 21069
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gtcacagccgccgccgccgc 354 |||||||||||||||||||| Sbjct: 9366 gtcacagccgccgccgccgc 9385
>gb|AC135279.3| Homo sapiens 12 BAC RP11-114F3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161841 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 cagccgccgccgccgctgag 358 |||||||||||||||||||| Sbjct: 81218 cagccgccgccgccgctgag 81237
>gb|AC147927.3| Ovis aries clone CH243-129I22, complete sequence Length = 187152 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 557 atgctccccaagtttgtcat 576 |||||||||||||||||||| Sbjct: 109613 atgctccccaagtttgtcat 109594
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644B06 Length = 194509 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 54338 cacagccgccgccgccgctg 54319
>dbj|AP005761.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1066D09 Length = 183999 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 172501 cacagccgccgccgccgctg 172520
>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0701E03 Length = 183245 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 341 gccgccgccgccgctgaggacggccatg 368 |||||||||||||| | ||||||||||| Sbjct: 164345 gccgccgccgccgcagcggacggccatg 164372
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 341 gccgccgccgccgctgaggacggccatg 368 |||||||||||||| | ||||||||||| Sbjct: 49591 gccgccgccgccgcagcggacggccatg 49618
>dbj|AP005907.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1151D08 Length = 152824 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 tcacagccgccgccgccgctgagg 359 |||| ||||||||||||||||||| Sbjct: 41187 tcaccgccgccgccgccgctgagg 41164
>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1457_D07 Length = 103688 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 cagccgccgccgccgctgag 358 |||||||||||||||||||| Sbjct: 46186 cagccgccgccgccgctgag 46167
>dbj|AP005536.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0055M07 Length = 150901 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 atgacgacgtcgacgacgcg 523 |||||||||||||||||||| Sbjct: 73880 atgacgacgtcgacgacgcg 73899
>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0676H02 Length = 144252 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 339 cagccgccgccgccgctgaggacg 362 ||||||||||||||| |||||||| Sbjct: 39745 cagccgccgccgccggtgaggacg 39768
>dbj|AP004770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017G06 Length = 150628 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 atgacgacgtcgacgacgcg 523 |||||||||||||||||||| Sbjct: 149208 atgacgacgtcgacgacgcg 149227
>gb|AE005006.1| Halobacterium sp. NRC-1 section 37 of 170 of the complete genome Length = 13283 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 254 tggtgtatcgccgccgacgcagacgagc 281 ||||||||||||| ||||| |||||||| Sbjct: 4026 tggtgtatcgccggcgacgaagacgagc 4053
>dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1311_D08 Length = 163702 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gtcacagccgccgccgccgc 354 |||||||||||||||||||| Sbjct: 38599 gtcacagccgccgccgccgc 38580
>dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E03 Length = 126845 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 49584 cacagccgccgccgccgctg 49565
>gb|AC148877.2| Chlamydomonas reinhardtii clone cr-11B1, complete sequence Length = 52591 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 341 gccgccgccgccgctgaggacggc 364 ||||||||||||||||||| |||| Sbjct: 18684 gccgccgccgccgctgaggccggc 18661
>gb|AF138905.1|AF138905 Gallus gallus NK class homeodomain transcription factor NKX3.2 mRNA, complete cds Length = 1678 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 341 gccgccgccgccgctgaggacggccatg 368 |||||||||||||| | ||||||||||| Sbjct: 35 gccgccgccgccgccgcggacggccatg 8
>gb|AE003730.3| Drosophila melanogaster chromosome 3R, section 68 of 118 of the complete sequence Length = 221402 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 cacagtcacagccgccgccgccgc 354 ||||| |||||||||||||||||| Sbjct: 64147 cacaggcacagccgccgccgccgc 64124
>gb|AE003666.6| Drosophila melanogaster chromosome 2L, section 75 of 83 of the complete sequence Length = 318277 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 267778 cacagccgccgccgccgctg 267797
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 451 tgacgctgctccatgcatgcgtgt 474 ||||| |||||||||||||||||| Sbjct: 2431453 tgacgttgctccatgcatgcgtgt 2431476
>gb|AC134529.6| Mus musculus BAC clone RP24-503A2 from chromosome 6, complete sequence Length = 166392 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 cacagtcacagccgccgccgccgc 354 ||||| |||||||||||||||||| Sbjct: 145630 cacagccacagccgccgccgccgc 145607
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gtcacagccgccgccgccgc 354 |||||||||||||||||||| Sbjct: 8887228 gtcacagccgccgccgccgc 8887209
>gb|BC000631.2| Homo sapiens growth factor receptor-bound protein 2, mRNA (cDNA clone MGC:1737 IMAGE:3345524), complete cds Length = 1347 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cacagccgccgccgccgctg 356 |||||||||||||||||||| Sbjct: 33 cacagccgccgccgccgctg 14
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gccgccgccgccgctgagga 360 |||||||||||||||||||| Sbjct: 1322391 gccgccgccgccgctgagga 1322410
>dbj|AB042507.1| Gallus gallus mRNA for NK class homeoprotein Nkx-3.2, complete cds Length = 1842 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 341 gccgccgccgccgctgaggacggccatg 368 |||||||||||||| | ||||||||||| Sbjct: 128 gccgccgccgccgccgcggacggccatg 101 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,301,638 Number of Sequences: 3902068 Number of extensions: 4301638 Number of successful extensions: 234457 Number of sequences better than 10.0: 97 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 226192 Number of HSP's gapped (non-prelim): 8262 length of query: 598 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 575 effective length of database: 17,143,297,704 effective search space: 9857396179800 effective search space used: 9857396179800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
