ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdf15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ000242.1|HVJ000242 Hordeum vulgare mRNA for expressed sequ... 862 0.0
2ref|XM_476651.1| Oryza sativa (japonica cultivar-group), mRNA 365 1e-97
3dbj|AK069726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
4gb|AY106174.1| Zea mays PCO144723 mRNA sequence 357 2e-95
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
6dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
7ref|XM_705187.1| Candida albicans SC5314 Bem1-like protein (CaO1... 44 0.47
8ref|XM_705171.1| Candida albicans SC5314 Bem1-like protein (CaO1... 44 0.47
9dbj|AK112043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.47
10ref|XM_602751.2| PREDICTED: Bos taurus similar to chromosome 20 ... 42 1.8
11ref|XM_866049.1| PREDICTED: Bos taurus similar to chromosome 20 ... 42 1.8
12gb|AC142114.3| Mus musculus BAC clone RP23-421C24 from chromosom... 42 1.8
13gb|AC096658.1| Homo sapiens BAC clone RP11-29C24 from 7, complet... 42 1.8
14gb|AC142307.1| Pan troglodytes BAC clone RP43-131H12 from 7, com... 42 1.8
15dbj|AB113399.1| Rattus norvegicus rCNR gene for cadherin-related... 42 1.8
16emb|AL840626.7| Mouse DNA sequence from clone RP23-151M8 on chro... 42 1.8
17gb|AC152076.4| Mus musculus BAC clone RP23-326O10 from chromosom... 40 7.3
18ref|XM_581880.2| PREDICTED: Bos taurus similar to cartilage inte... 40 7.3
19gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
20gb|AC113495.15| Mus musculus chromosome 9, clone RP23-361O11, co... 40 7.3
21gb|AC118540.15| Mus musculus strain 129/SvJ clone mgs1-169d12 ma... 40 7.3
22gb|AC127283.2| Mus musculus BAC clone RP23-323E20 from chromosom... 40 7.3
23gb|AC144503.17| Medicago truncatula clone mth2-13f22, complete s... 40 7.3
24gb|AC090329.6| Homo sapiens chromosome 18, clone RP11-793M6, com... 40 7.3
25emb|AL645643.7| Mouse DNA sequence from clone RP23-253F13 on chr... 40 7.3
26gb|AC110012.5| Homo sapiens chromosome 8, clone CTD-2024L13, com... 40 7.3
27gb|AC091044.9| Homo sapiens chromosome 18, clone RP11-694H12, co... 40 7.3
28gb|AC093328.3| Homo sapiens chromosome 8, clone RP11-30J20, comp... 40 7.3
29gb|AC161113.2| Mus musculus BAC clone RP24-362N9 from chromosome... 40 7.3
30dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
31dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
32gb|AC007684.3| Homo sapiens BAC clone RP11-449G16 from 2, comple... 40 7.3
33gb|AC008073.4| Homo sapiens BAC clone RP11-507M3 from 2, complet... 40 7.3
34gb|AF445393.1|F445385S08 Homo sapiens MAP4K3 (MAP4K3) gene, exon... 40 7.3
35gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
36emb|AL772137.8| Mouse DNA sequence from clone RP23-229A22 on chr... 40 7.3
37emb|CT025670.8| Mouse DNA sequence from clone RP24-384G18 on chr... 40 7.3 
>emb|AJ000242.1|HVJ000242 Hordeum vulgare mRNA for expressed sequence tag
          Length = 774

 Score =  862 bits (435), Expect = 0.0
 Identities = 445/447 (99%), Gaps = 1/447 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gttgttgagnagacgtgaagaaagaccggcagtgatgaatgcattcgagttgatctctac 61
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gttgttgag-agacgtgaagaaagaccggcagtgatgaatgcattcgagttgatctctac 387

                                                                       
Query: 62  ctctcagggcctcaatcttggcaccctttttgagaagcaaactgattctgttaaacgtga 121
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctctcaggggctcaatcttggcaccctttttgagaagcaaactgattctgttaaacgtga 447

                                                                       
Query: 122 aacacggtttgcatcgaggcttccagcaaatgaaatattgtcgaaaattgaagcagcagc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aacacggtttgcatcgaggcttccagcaaatgaaatattgtcgaaaattgaagcagcagc 507

                                                                       
Query: 182 aggacccatgggcttcaatgtacagaagcgcaactacaagctgaagttgcaaggagagaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aggacccatgggcttcaatgtacagaagcgcaactacaagctgaagttgcaaggagagaa 567

                                                                       
Query: 242 tcctggaaggaaaggtcagctggcgattgcaacagaggtttttgaagtgacaccctcact 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tcctggaaggaaaggtcagctggcgattgcaacagaggtttttgaagtgacaccctcact 627

                                                                       
Query: 302 atacatggtggagctccgcaagtcgaatggcgacaccctcgaattccacaagttttacca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atacatggtggagctccgcaagtcgaatggcgacaccctcgaattccacaagttttacca 687

                                                                       
Query: 362 tagtatctcgaatggcctgaaggacgtcatgtggaagccagagggtagcatagctgaagg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tagtatctcgaatggcctgaaggacgtcatgtggaagccagagggtagcatagctgaagg 747

                                      
Query: 422 cgacgagacccggcaccggaggtctcc 448
           |||||||||||||||||||||||||||
Sbjct: 748 cgacgagacccggcaccggaggtctcc 774
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>ref|XM_476651.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1893

 Score =  365 bits (184), Expect = 1e-97
 Identities = 336/386 (87%), Gaps = 3/386 (0%)
 Strand = Plus / Plus

                                                                        
Query: 31   cagtgatgaatgcattcgagttgatctctacctctcagggcctcaatcttggcacccttt 90
            ||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || |
Sbjct: 1210 cagtgatgaatgcttttgagttgatctctacatctcagggtctcaatcttggcacactct 1269

                                                                        
Query: 91   ttgagaagcaaactga---ttctgttaaacgtgaaacacggtttgcatcgaggcttccag 147
            |||| |||||| |  |   |||||| || || |||||| | |||||||| ||||| || |
Sbjct: 1270 ttgaaaagcaatcgcagggttctgtgaagcgagaaacaagatttgcatcaaggctgcctg 1329

                                                                        
Query: 148  caaatgaaatattgtcgaaaattgaagcagcagcaggacccatgggcttcaatgtacaga 207
            |||| || ||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct: 1330 caaacgagatattgtcgaaaattgaagcagctgctggacccatgggctttaatgtacaga 1389

                                                                        
Query: 208  agcgcaactacaagctgaagttgcaaggagagaatcctggaaggaaaggtcagctggcga 267
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct: 1390 agcgcaactacaagctgaagttgcaaggagagaatccaggaaggaaaggtcagcttgcaa 1449

                                                                        
Query: 268  ttgcaacagaggtttttgaagtgacaccctcactatacatggtggagctccgcaagtcga 327
            |||||||||||||||||||||| || ||||| || |||||||| ||||||||||| || |
Sbjct: 1450 ttgcaacagaggtttttgaagtcacgccctcgctgtacatggttgagctccgcaaatcta 1509

                                                                        
Query: 328  atggcgacaccctcgaattccacaagttttaccatagtatctcgaatggcctgaaggacg 387
            | |||||||| || |||||||| ||||| ||||| |  ||||| ||||||||||| || |
Sbjct: 1510 acggcgacactcttgaattccataagttctaccacaacatctccaatggcctgaaagatg 1569

                                      
Query: 388  tcatgtggaagccagagggtagcata 413
            | ||||||||||| ||| ||||||||
Sbjct: 1570 tgatgtggaagccggagagtagcata 1595
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>dbj|AK069726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030M13, full
            insert sequence
          Length = 1894

 Score =  365 bits (184), Expect = 1e-97
 Identities = 336/386 (87%), Gaps = 3/386 (0%)
 Strand = Plus / Plus

                                                                        
Query: 31   cagtgatgaatgcattcgagttgatctctacctctcagggcctcaatcttggcacccttt 90
            ||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || |
Sbjct: 1209 cagtgatgaatgcttttgagttgatctctacatctcagggtctcaatcttggcacactct 1268

                                                                        
Query: 91   ttgagaagcaaactga---ttctgttaaacgtgaaacacggtttgcatcgaggcttccag 147
            |||| |||||| |  |   |||||| || || |||||| | |||||||| ||||| || |
Sbjct: 1269 ttgaaaagcaatcgcagggttctgtgaagcgagaaacaagatttgcatcaaggctgcctg 1328

                                                                        
Query: 148  caaatgaaatattgtcgaaaattgaagcagcagcaggacccatgggcttcaatgtacaga 207
            |||| || ||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct: 1329 caaacgagatattgtcgaaaattgaagcagctgctggacccatgggctttaatgtacaga 1388

                                                                        
Query: 208  agcgcaactacaagctgaagttgcaaggagagaatcctggaaggaaaggtcagctggcga 267
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct: 1389 agcgcaactacaagctgaagttgcaaggagagaatccaggaaggaaaggtcagcttgcaa 1448

                                                                        
Query: 268  ttgcaacagaggtttttgaagtgacaccctcactatacatggtggagctccgcaagtcga 327
            |||||||||||||||||||||| || ||||| || |||||||| ||||||||||| || |
Sbjct: 1449 ttgcaacagaggtttttgaagtcacgccctcgctgtacatggttgagctccgcaaatcta 1508

                                                                        
Query: 328  atggcgacaccctcgaattccacaagttttaccatagtatctcgaatggcctgaaggacg 387
            | |||||||| || |||||||| ||||| ||||| |  ||||| ||||||||||| || |
Sbjct: 1509 acggcgacactcttgaattccataagttctaccacaacatctccaatggcctgaaagatg 1568

                                      
Query: 388  tcatgtggaagccagagggtagcata 413
            | ||||||||||| ||| ||||||||
Sbjct: 1569 tgatgtggaagccggagagtagcata 1594
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>gb|AY106174.1| Zea mays PCO144723 mRNA sequence
          Length = 1844

 Score =  357 bits (180), Expect = 2e-95
 Identities = 366/428 (85%)
 Strand = Plus / Plus

                                                                        
Query: 18   gaagaaagaccggcagtgatgaatgcattcgagttgatctctacctctcagggcctcaat 77
            |||||||||||  |||||||||| || |||||||| |||||||| |||||||||||||||
Sbjct: 1265 gaagaaagaccatcagtgatgaacgctttcgagttaatctctacgtctcagggcctcaat 1324

                                                                        
Query: 78   cttggcaccctttttgagaagcaaactgattctgttaaacgtgaaacacggtttgcatcg 137
            || || || || || ||||||||||| | ||||||||| || |||||| ||||||| || 
Sbjct: 1325 ctcgggacgctcttcgagaagcaaacgggttctgttaagcgagaaacaaggtttgcgtca 1384

                                                                        
Query: 138  aggcttccagcaaatgaaatattgtcgaaaattgaagcagcagcaggacccatgggcttc 197
            |||||||| |||||||| ||| ||||||| || ||||||||||| |||||||||||||||
Sbjct: 1385 aggcttcctgcaaatgagatactgtcgaagatcgaagcagcagcgggacccatgggcttc 1444

                                                                        
Query: 198  aatgtacagaagcgcaactacaagctgaagttgcaaggagagaatcctggaaggaaaggt 257
            || || |||||||||||||| ||||||||| ||||||| ||||| |||||||||||||||
Sbjct: 1445 aacgttcagaagcgcaactataagctgaagctgcaaggggagaaccctggaaggaaaggt 1504

                                                                        
Query: 258  cagctggcgattgcaacagaggtttttgaagtgacaccctcactatacatggtggagctc 317
            |||||||| || |||||||||||||| || || || || || || |||||||| ||||| 
Sbjct: 1505 cagctggccatcgcaacagaggttttcgaggtcacgccttccctgtacatggttgagctg 1564

                                                                        
Query: 318  cgcaagtcgaatggcgacaccctcgaattccacaagttttaccatagtatctcgaatggc 377
            |||||||| || ||||||||||| |||||||||||||| ||||| |  ||||| ||||| 
Sbjct: 1565 cgcaagtccaacggcgacacccttgaattccacaagttctaccacaacatctcaaatgga 1624

                                                                        
Query: 378  ctgaaggacgtcatgtggaagccagagggtagcatagctgaaggcgacgagacccggcac 437
            ||||||||||| ||||||||||| ||| |  |||| |  |||||||||||| | ||||| 
Sbjct: 1625 ctgaaggacgtgatgtggaagccggagagcggcatcgtggaaggcgacgaggcgcggcaa 1684

                    
Query: 438  cggaggtc 445
             |||||||
Sbjct: 1685 aggaggtc 1692
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  125 bits (63), Expect = 2e-25
 Identities = 102/115 (88%)
 Strand = Plus / Minus

                                                                           
Query: 107     ttctgttaaacgtgaaacacggtttgcatcgaggcttccagcaaatgaaatattgtcgaa 166
               |||||| || || |||||| | |||||||| ||||| || ||||| || |||||||||||
Sbjct: 2676599 ttctgtgaagcgagaaacaagatttgcatcaaggctgcctgcaaacgagatattgtcgaa 2676540

                                                                      
Query: 167     aattgaagcagcagcaggacccatgggcttcaatgtacagaagcgcaactacaag 221
               |||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct: 2676539 aattgaagcagctgctggacccatgggctttaatgtacagaagcgcaactacaag 2676485



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 58/61 (95%)
 Strand = Plus / Minus

                                                                           
Query: 220     agctgaagttgcaaggagagaatcctggaaggaaaggtcagctggcgattgcaacagagg 279
               ||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct: 2676397 agctgaagttgcaaggagagaatccaggaaggaaaggtcagcttgcaattgcaacagagg 2676338

                
Query: 280     t 280
               |
Sbjct: 2676337 t 2676337



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                           
Query: 31      cagtgatgaatgcattcgagttgatctctacctctcagggcctcaatcttggcacccttt 90
               ||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || |
Sbjct: 2676793 cagtgatgaatgcttttgagttgatctctacatctcagggtctcaatcttggcacactct 2676734

                          
Query: 91      ttgagaagcaa 101
               |||| ||||||
Sbjct: 2676733 ttgaaaagcaa 2676723



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                           
Query: 277     aggtttttgaagtgacaccctcactatacatggtggagctccgcaagtcgaatggcgaca 336
               ||||||||||||| || ||||| || |||||||| ||||||||||| || || |||||||
Sbjct: 2676222 aggtttttgaagtcacgccctcgctgtacatggttgagctccgcaaatctaacggcgaca 2676163

                            
Query: 337     ccctcgaattcca 349
               | || ||||||||
Sbjct: 2676162 ctcttgaattcca 2676150



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                               
Query: 366     atctcgaatggcctgaaggacgtcatgtggaagccagagggtagcata 413
               ||||| ||||||||||| || || ||||||||||| ||| ||||||||
Sbjct: 2676037 atctccaatggcctgaaagatgtgatgtggaagccggagagtagcata 2675990
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>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1027_G06
          Length = 121885

 Score =  125 bits (63), Expect = 2e-25
 Identities = 102/115 (88%)
 Strand = Plus / Minus

                                                                          
Query: 107    ttctgttaaacgtgaaacacggtttgcatcgaggcttccagcaaatgaaatattgtcgaa 166
              |||||| || || |||||| | |||||||| ||||| || ||||| || |||||||||||
Sbjct: 102317 ttctgtgaagcgagaaacaagatttgcatcaaggctgcctgcaaacgagatattgtcgaa 102258

                                                                     
Query: 167    aattgaagcagcagcaggacccatgggcttcaatgtacagaagcgcaactacaag 221
              |||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct: 102257 aattgaagcagctgctggacccatgggctttaatgtacagaagcgcaactacaag 102203



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 58/61 (95%)
 Strand = Plus / Minus

                                                                          
Query: 220    agctgaagttgcaaggagagaatcctggaaggaaaggtcagctggcgattgcaacagagg 279
              ||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct: 102115 agctgaagttgcaaggagagaatccaggaaggaaaggtcagcttgcaattgcaacagagg 102056

               
Query: 280    t 280
              |
Sbjct: 102055 t 102055



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                          
Query: 31     cagtgatgaatgcattcgagttgatctctacctctcagggcctcaatcttggcacccttt 90
              ||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || |
Sbjct: 102511 cagtgatgaatgcttttgagttgatctctacatctcagggtctcaatcttggcacactct 102452

                         
Query: 91     ttgagaagcaa 101
              |||| ||||||
Sbjct: 102451 ttgaaaagcaa 102441



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                          
Query: 277    aggtttttgaagtgacaccctcactatacatggtggagctccgcaagtcgaatggcgaca 336
              ||||||||||||| || ||||| || |||||||| ||||||||||| || || |||||||
Sbjct: 101940 aggtttttgaagtcacgccctcgctgtacatggttgagctccgcaaatctaacggcgaca 101881

                           
Query: 337    ccctcgaattcca 349
              | || ||||||||
Sbjct: 101880 ctcttgaattcca 101868



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                              
Query: 366    atctcgaatggcctgaaggacgtcatgtggaagccagagggtagcata 413
              ||||| ||||||||||| || || ||||||||||| ||| ||||||||
Sbjct: 101755 atctccaatggcctgaaagatgtgatgtggaagccggagagtagcata 101708
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>ref|XM_705187.1| Candida albicans SC5314 Bem1-like protein (CaO19.177), mRNA
          Length = 1453

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 151 atgaaatattgtcgaaaattgaagca 176
           ||||||||||||| ||||||||||||
Sbjct: 638 atgaaatattgtctaaaattgaagca 663
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>ref|XM_705171.1| Candida albicans SC5314 Bem1-like protein (CaO19.7810), mRNA
          Length = 1453

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 151 atgaaatattgtcgaaaattgaagca 176
           ||||||||||||| ||||||||||||
Sbjct: 638 atgaaatattgtctaaaattgaagca 663
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>dbj|AK112043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B09, full
            insert sequence
          Length = 1515

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 330  ggcgacaccctcgaattccacaagtt 355
            ||||||||||||||||| ||||||||
Sbjct: 1121 ggcgacaccctcgaatttcacaagtt 1146
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>ref|XM_602751.2| PREDICTED: Bos taurus similar to chromosome 20 open reading frame 42,
            transcript variant 1 (LOC524427), mRNA
          Length = 4362

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 131  tgcatcgaggcttccagcaaa 151
            |||||||||||||||||||||
Sbjct: 2723 tgcatcgaggcttccagcaaa 2743
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>ref|XM_866049.1| PREDICTED: Bos taurus similar to chromosome 20 open reading frame 42,
            transcript variant 2 (LOC524427), mRNA
          Length = 4471

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 131  tgcatcgaggcttccagcaaa 151
            |||||||||||||||||||||
Sbjct: 2832 tgcatcgaggcttccagcaaa 2852
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>gb|AC142114.3| Mus musculus BAC clone RP23-421C24 from chromosome 14, complete
             sequence
          Length = 196408

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   tggaaggaaaggtcagctggc 265
             |||||||||||||||||||||
Sbjct: 89426 tggaaggaaaggtcagctggc 89406
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>gb|AC096658.1| Homo sapiens BAC clone RP11-29C24 from 7, complete sequence
          Length = 77142

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 230  gcaaggagagaatcctggaaggaaa 254
            ||||||||| |||||||||||||||
Sbjct: 7808 gcaaggagaaaatcctggaaggaaa 7784
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>gb|AC142307.1| Pan troglodytes BAC clone RP43-131H12 from 7, complete sequence
          Length = 158646

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 230   gcaaggagagaatcctggaaggaaa 254
             ||||||||| |||||||||||||||
Sbjct: 43298 gcaaggagaaaatcctggaaggaaa 43322
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>dbj|AB113399.1| Rattus norvegicus rCNR gene for cadherin-related neuronal receptor, exon
              cluster
          Length = 249555

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 186    cccatgggcttcaatgtacag 206
              |||||||||||||||||||||
Sbjct: 178466 cccatgggcttcaatgtacag 178446
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>emb|AL840626.7| Mouse DNA sequence from clone RP23-151M8 on chromosome 2, complete
             sequence
          Length = 181014

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 389   catgtggaagccagagggtagcata 413
             |||||||||||||||||| ||||||
Sbjct: 63692 catgtggaagccagagggcagcata 63668
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>gb|AC152076.4| Mus musculus BAC clone RP23-326O10 from chromosome 18, complete
             sequence
          Length = 215816

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   catgtggaagccagagggta 408
             ||||||||||||||||||||
Sbjct: 85528 catgtggaagccagagggta 85547
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>ref|XM_581880.2| PREDICTED: Bos taurus similar to cartilage intermediate layer
            protein, nucleotide pyrophosphohydrolase (LOC505573),
            mRNA
          Length = 5526

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 385  acgtcatgtggaagccagag 404
            ||||||||||||||||||||
Sbjct: 4818 acgtcatgtggaagccagag 4837
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>gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019B24,
              complete sequence
          Length = 162385

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 330    ggcgacaccctcgaattccacaag 353
              ||||||||||||||||| ||||||
Sbjct: 124379 ggcgacaccctcgaatttcacaag 124402
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>gb|AC113495.15| Mus musculus chromosome 9, clone RP23-361O11, complete sequence
          Length = 195356

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    tcatgtggaagccagagggt 407
              ||||||||||||||||||||
Sbjct: 112292 tcatgtggaagccagagggt 112273
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>gb|AC118540.15| Mus musculus strain 129/SvJ clone mgs1-169d12 map 3, complete sequence
          Length = 191014

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 389    catgtggaagccagagggtagcat 412
              ||||||||||||||||| ||||||
Sbjct: 125188 catgtggaagccagaggatagcat 125165
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>gb|AC127283.2| Mus musculus BAC clone RP23-323E20 from chromosome 3, complete sequence
          Length = 210014

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 389    catgtggaagccagagggtagcat 412
              ||||||||||||||||| ||||||
Sbjct: 153555 catgtggaagccagaggatagcat 153532
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>gb|AC144503.17| Medicago truncatula clone mth2-13f22, complete sequence
          Length = 116810

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   gaaaattgaagcagcagcag 183
             ||||||||||||||||||||
Sbjct: 74193 gaaaattgaagcagcagcag 74212
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>gb|AC090329.6| Homo sapiens chromosome 18, clone RP11-793M6, complete sequence
          Length = 141741

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   aggcttccagcaaatgaaat 157
             ||||||||||||||||||||
Sbjct: 19507 aggcttccagcaaatgaaat 19488
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>emb|AL645643.7| Mouse DNA sequence from clone RP23-253F13 on chromosome 13 Contains part
              of the Gmds gene for GDP-mannose 4, 6-dehydratase, complete
              sequence
          Length = 185384

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 378    ctgaaggacgtcatgtggaagcca 401
              |||||||||||||| |||||||||
Sbjct: 154790 ctgaaggacgtcatctggaagcca 154813
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>gb|AC110012.5| Homo sapiens chromosome 8, clone CTD-2024L13, complete sequence
          Length = 163126

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 388   tcatgtggaagccagagggtagca 411
             ||||||||| ||||||||||||||
Sbjct: 29791 tcatgtggaggccagagggtagca 29768
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>gb|AC091044.9| Homo sapiens chromosome 18, clone RP11-694H12, complete sequence
          Length = 172179

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ctctacctctcagggcctca 75
             ||||||||||||||||||||
Sbjct: 62648 ctctacctctcagggcctca 62629
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>gb|AC093328.3| Homo sapiens chromosome 8, clone RP11-30J20, complete sequence
          Length = 163640

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 511   tatggatgttttttcatgttctat 534
             ||||| ||||||||||||||||||
Sbjct: 99089 tatggttgttttttcatgttctat 99066
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>gb|AC161113.2| Mus musculus BAC clone RP24-362N9 from chromosome 9, complete sequence
          Length = 171642

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   tcatgtggaagccagagggt 407
             ||||||||||||||||||||
Sbjct: 47082 tcatgtggaagccagagggt 47063
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 330     ggcgacaccctcgaattccacaag 353
               ||||||||||||||||| ||||||
Sbjct: 1609843 ggcgacaccctcgaatttcacaag 1609866
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 462      aatgttaggaggtagaagataaaa 485
                ||||||||||||||||||| ||||
Sbjct: 18881658 aatgttaggaggtagaagaaaaaa 18881681
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>gb|AC007684.3| Homo sapiens BAC clone RP11-449G16 from 2, complete sequence
          Length = 196848

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     ctttttgagaagcaaactga 106
              ||||||||||||||||||||
Sbjct: 133701 ctttttgagaagcaaactga 133682
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>gb|AC008073.4| Homo sapiens BAC clone RP11-507M3 from 2, complete sequence
          Length = 166660

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 492    aggaacctcaggaaagtcct 511
              ||||||||||||||||||||
Sbjct: 100518 aggaacctcaggaaagtcct 100499
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>gb|AF445393.1|F445385S08 Homo sapiens MAP4K3 (MAP4K3) gene, exons 9 through 12
          Length = 1434

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 87   ctttttgagaagcaaactga 106
            ||||||||||||||||||||
Sbjct: 1345 ctttttgagaagcaaactga 1326
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 330     ggcgacaccctcgaattccacaag 353
               ||||||||||||||||| ||||||
Sbjct: 1607564 ggcgacaccctcgaatttcacaag 1607587
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>emb|AL772137.8| Mouse DNA sequence from clone RP23-229A22 on chromosome 4, complete
            sequence
          Length = 165975

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 389  catgtggaagccagagggtagcat 412
            |||||||| |||||||||||||||
Sbjct: 7068 catgtggaggccagagggtagcat 7045
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>emb|CT025670.8| Mouse DNA sequence from clone RP24-384G18 on chromosome 17, complete
              sequence
          Length = 199300

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 204    cagaagcgcaactacaagctgaag 227
              |||||||||||||| |||||||||
Sbjct: 167095 cagaagcgcaactagaagctgaag 167072


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,846,903
Number of Sequences: 3902068
Number of extensions: 4846903
Number of successful extensions: 86960
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86794
Number of HSP's gapped (non-prelim): 166
length of query: 537
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 514
effective length of database: 17,143,297,704
effective search space: 8811655019856
effective search space used: 8811655019856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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