Clone Name | basdg09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Minus Query: 287 ctcggagctgctcctcccgaggct 310 |||||||||||||||||||||||| Sbjct: 27826489 ctcggagctgctcctcccgaggct 27826466
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0663F07 Length = 159046 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Minus Query: 287 ctcggagctgctcctcccgaggct 310 |||||||||||||||||||||||| Sbjct: 111822 ctcggagctgctcctcccgaggct 111799
>dbj|AK104122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C10, full insert sequence Length = 1020 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Plus Query: 287 ctcggagctgctcctcccgaggct 310 |||||||||||||||||||||||| Sbjct: 92 ctcggagctgctcctcccgaggct 115
>dbj|AK099314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150J15, full insert sequence Length = 1033 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Plus Query: 287 ctcggagctgctcctcccgaggct 310 |||||||||||||||||||||||| Sbjct: 98 ctcggagctgctcctcccgaggct 121
>dbj|AK071853.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114C23, full insert sequence Length = 1033 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Plus Query: 287 ctcggagctgctcctcccgaggct 310 |||||||||||||||||||||||| Sbjct: 98 ctcggagctgctcctcccgaggct 121
>gb|BC076521.1| Danio rerio zgc:92447, mRNA (cDNA clone MGC:92447 IMAGE:7041398), complete cds Length = 4680 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 474 tctcaccttgttcatccctctgtctctctcc 504 |||||||||||||||| |||||||| ||||| Sbjct: 1358 tctcaccttgttcatctctctgtctgtctcc 1328
>emb|BX677675.9| Zebrafish DNA sequence from clone DKEYP-90G12 in linkage group 2, complete sequence Length = 124301 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 474 tctcaccttgttcatccctctgtctctctcc 504 |||||||||||||||| |||||||| ||||| Sbjct: 97376 tctcaccttgttcatctctctgtctgtctcc 97406
>ref|NM_001002667.1| Danio rerio zgc:92447 (zgc:92447), mRNA Length = 4680 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 474 tctcaccttgttcatccctctgtctctctcc 504 |||||||||||||||| |||||||| ||||| Sbjct: 1358 tctcaccttgttcatctctctgtctgtctcc 1328
>emb|AJ313508.1|YLI313508 Yarrowia lipolytica gpr1 gene for glyoxylate pathway regulator Length = 4110 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 485 tcatccctctgtctctctccttc 507 ||||||||||||||||||||||| Sbjct: 857 tcatccctctgtctctctccttc 879
>gb|AC164420.4| Mus musculus chromosome 8, clone RP24-388L13, complete sequence Length = 174120 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 318 ctccgagctccctcctcctgtagctgc 344 |||||||||||||||||||||| |||| Sbjct: 120667 ctccgagctccctcctcctgtaactgc 120693
>gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, complete sequence Length = 209209 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 471 ctctctcaccttgttcatccctc 493 ||||||||||||||||||||||| Sbjct: 185511 ctctctcaccttgttcatccctc 185533
>gb|AC141632.4| Mus musculus BAC clone RP24-100G24 from 3, complete sequence Length = 180488 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 471 ctctctcaccttgttcatccctc 493 ||||||||||||||||||||||| Sbjct: 16870 ctctctcaccttgttcatccctc 16892
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 485 tcatccctctgtctctctccttc 507 ||||||||||||||||||||||| Sbjct: 3167693 tcatccctctgtctctctccttc 3167715
>gb|AC120789.12| Mus musculus chromosome 8, clone RP23-441F24, complete sequence Length = 204013 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 318 ctccgagctccctcctcctgtagctgc 344 |||||||||||||||||||||| |||| Sbjct: 27215 ctccgagctccctcctcctgtaactgc 27241
>gb|AC093734.3| Homo sapiens BAC clone RP11-16P10 from 7, complete sequence Length = 114085 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 483 gttcatccctctgtctctctc 503 ||||||||||||||||||||| Sbjct: 86264 gttcatccctctgtctctctc 86284
>gb|AC132120.3| Mus musculus BAC clone RP23-479B19 from chromosome 8, complete sequence Length = 173226 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 488 tccctctgtctctctccttccgcag 512 ||||| ||||||||||||||||||| Sbjct: 117183 tccctttgtctctctccttccgcag 117159
>gb|AC136621.2| Homo sapiens chromosome 16 clone RP11-481F24, complete sequence Length = 186021 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 485 tcatccctctgtctctctccttccg 509 |||||||||||||||||| |||||| Sbjct: 118072 tcatccctctgtctctctgcttccg 118096
>gb|AC026802.9| Homo sapiens chromosome 16 clone CTD-2545G24, complete sequence Length = 188923 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 485 tcatccctctgtctctctccttccg 509 |||||||||||||||||| |||||| Sbjct: 30030 tcatccctctgtctctctgcttccg 30006
>gb|BC039212.1| Mus musculus prominin 2, mRNA (cDNA clone MGC:31164 IMAGE:4188940), complete cds Length = 4211 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 cctcctcctgtagctgctgcc 348 ||||||||||||||||||||| Sbjct: 2052 cctcctcctgtagctgctgcc 2032
>gb|AF508942.1| Rattus norvegicus prominin-2.s1 splice variant mRNA, complete cds Length = 3399 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 cctcctcctgtagctgctgcc 348 ||||||||||||||||||||| Sbjct: 2077 cctcctcctgtagctgctgcc 2057
>ref|NM_138857.1| Rattus norvegicus prominin 2 (Prom2), mRNA Length = 4294 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 cctcctcctgtagctgctgcc 348 ||||||||||||||||||||| Sbjct: 2095 cctcctcctgtagctgctgcc 2075
>gb|AY326794.1| Chlamydomonas reinhardtii putative phosphate/phosphoenolpyruvate translocator precursor (PPT2) mRNA, complete cds; nuclear gene for plastid product Length = 2235 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 340 gctgctgccgcccgagagcctcgcc 364 ||||||| ||||||||||||||||| Sbjct: 948 gctgctgacgcccgagagcctcgcc 972
>emb|AL662779.10| Mouse DNA sequence from clone RP23-177A4 on chromosome 11 Contains the Kif2b gene for kinesin family member 28, complete sequence Length = 231926 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 484 ttcatccctctgtctctctccttcc 508 ||||||||||||||||||| ||||| Sbjct: 96331 ttcatccctctgtctctcttcttcc 96307
>gb|AC007602.6| Homo sapiens chromosome 16 clone RP11-2D4, complete sequence Length = 167094 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 485 tcatccctctgtctctctccttccg 509 |||||||||||||||||| |||||| Sbjct: 96477 tcatccctctgtctctctgcttccg 96453
>gb|BC007937.1|BC007937 Homo sapiens, clone IMAGE:4126408, mRNA Length = 3399 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 485 tcatccctctgtctctctccttccg 509 |||||||||||||||||| |||||| Sbjct: 2956 tcatccctctgtctctctgcttccg 2980
>gb|AC026462.5| Homo sapiens chromosome 16 clone RP11-297L17, complete sequence Length = 179640 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 atccctctgtctctctccttc 507 ||||||||||||||||||||| Sbjct: 130166 atccctctgtctctctccttc 130146
>gb|AC117378.8| Homo sapiens 12 BAC RP11-112B10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 110459 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 488 tccctctgtctctctccttcc 508 ||||||||||||||||||||| Sbjct: 108991 tccctctgtctctctccttcc 108971
>gb|AC121758.14| Homo sapiens 12 BAC RP11-74M13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 130479 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 488 tccctctgtctctctccttcc 508 ||||||||||||||||||||| Sbjct: 129943 tccctctgtctctctccttcc 129963
>gb|AF269062.1| Mus musculus prominin-2 mRNA, complete cds Length = 2828 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 cctcctcctgtagctgctgcc 348 ||||||||||||||||||||| Sbjct: 2134 cctcctcctgtagctgctgcc 2114
>gb|AF486828.1| Rattus norvegicus testosterone-regulated prominin-related protein (Trprp) mRNA, complete cds Length = 4294 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 cctcctcctgtagctgctgcc 348 ||||||||||||||||||||| Sbjct: 2095 cctcctcctgtagctgctgcc 2075
>emb|BX544888.2| Mouse DNA sequence from clone RP24-232N15 on chromosome 4, complete sequence Length = 68939 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 cttgttcatccctctgtctct 500 ||||||||||||||||||||| Sbjct: 9502 cttgttcatccctctgtctct 9482
>emb|X91119.2|HSNETEX13 Homo sapiens partial SLC6A2 gene for norepinephrine transporter, exon 13-15 Length = 4532 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 485 tcatccctctgtctctctccttccg 509 |||||||||||||||||| |||||| Sbjct: 4358 tcatccctctgtctctctgcttccg 4382
>gb|AC159234.2| Mus musculus BAC clone RP24-432D6 from chromosome 12, complete sequence Length = 152905 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 accactgccatggcctcctcc 81 ||||||||||||||||||||| Sbjct: 53944 accactgccatggcctcctcc 53964
>ref|NM_138750.1| Mus musculus prominin 2 (Prom2), transcript variant 1, mRNA Length = 2828 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 cctcctcctgtagctgctgcc 348 ||||||||||||||||||||| Sbjct: 2134 cctcctcctgtagctgctgcc 2114
>emb|AL772398.7| Mouse DNA sequence from clone RP23-173J23 on chromosome 2, complete sequence Length = 200773 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 ttcatccctctgtctctctcc 504 ||||||||||||||||||||| Sbjct: 169916 ttcatccctctgtctctctcc 169896
>dbj|AB022847.1| Homo sapiens mRNA for norepinephrine transporter isoform 2, partial cds Length = 1028 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 485 tcatccctctgtctctctccttccg 509 |||||||||||||||||| |||||| Sbjct: 937 tcatccctctgtctctctgcttccg 961
>ref|XM_521073.1| PREDICTED: Pan troglodytes similar to RIB43A domain with coiled-coils 1 (LOC465648), mRNA Length = 1200 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gcaggagcaacagcaagcca 528 |||||||||||||||||||| Sbjct: 423 gcaggagcaacagcaagcca 442
>ref|XM_513622.1| PREDICTED: Pan troglodytes similar to Sortilin precursor (Glycoprotein 95) (Gp95) (Neurotensin receptor 3) (NT3) (100 kDa NT receptor) (LOC457091), mRNA Length = 626 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 cctcctcctgtagctgctgccgcc 351 |||||||||| ||||||||||||| Sbjct: 77 cctcctcctgcagctgctgccgcc 100
>gb|AC162446.2| Mus musculus chromosome 8, clone RP23-410L16, complete sequence Length = 197906 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 ccccagctccgagctccctcctcc 335 |||||||||| ||||||||||||| Sbjct: 136653 ccccagctcccagctccctcctcc 136676
>ref|XM_418216.1| PREDICTED: Gallus gallus similar to GLGL782 (LOC420096), mRNA Length = 1746 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cctccatcccatcggcctca 234 |||||||||||||||||||| Sbjct: 154 cctccatcccatcggcctca 135
>ref|NM_002959.4| Homo sapiens sortilin 1 (SORT1), mRNA Length = 7018 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 cctcctcctgtagctgctgccgcc 351 |||||||||| ||||||||||||| Sbjct: 112 cctcctcctgcagctgctgccgcc 135
>ref|NM_001031745.1| Homo sapiens RIB43A domain with coiled-coils 1 (RIBC1), transcript variant 1, mRNA Length = 1500 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gcaggagcaacagcaagcca 528 |||||||||||||||||||| Sbjct: 657 gcaggagcaacagcaagcca 676
>ref|NM_144968.1| Homo sapiens RIB43A domain with coiled-coils 1 (RIBC1), transcript variant 2, mRNA Length = 1949 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gcaggagcaacagcaagcca 528 |||||||||||||||||||| Sbjct: 708 gcaggagcaacagcaagcca 727
>ref|NM_174505.2| Bos taurus vacuolar proton-ATPase, subunit D; V-ATPase, subunit D (ATP6D), mRNA Length = 1538 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 351 ccgagagcctcgcccaacgccaccgggc 378 ||||| || ||||||||||||||||||| Sbjct: 1052 ccgagtgcatcgcccaacgccaccgggc 1079
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ccatctcccatggctttggt 59 |||||||||||||||||||| Sbjct: 11126294 ccatctcccatggctttggt 11126313
>gb|AC055873.8| Homo sapiens chromosome 15, clone RP11-339F1, complete sequence Length = 194765 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 tccctctgtctctctccttc 507 |||||||||||||||||||| Sbjct: 170124 tccctctgtctctctccttc 170105
>gb|AC076968.38| Homo sapiens 12 BAC RP11-686F15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 203038 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 477 caccttgttcatccctctgtctct 500 ||||||||||||||| |||||||| Sbjct: 71668 caccttgttcatccccctgtctct 71645
>ref|XM_548144.2| PREDICTED: Canis familiaris similar to MLN 64 protein (StAR-related lipid transfer protein 3) (StARD3) (START domain-containing protein 3) (CAB1 protein), transcript variant 1 (LOC491024), mRNA Length = 1444 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caccactgccatggcctcct 79 |||||||||||||||||||| Sbjct: 849 caccactgccatggcctcct 830
>ref|XM_846381.1| PREDICTED: Canis familiaris similar to MLN 64 protein (StAR-related lipid transfer protein 3) (StARD3) (START domain-containing protein 3) (CAB1 protein), transcript variant 2 (LOC491024), mRNA Length = 1492 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caccactgccatggcctcct 79 |||||||||||||||||||| Sbjct: 897 caccactgccatggcctcct 878
>ref|XM_858705.1| PREDICTED: Canis familiaris similar to MLN 64 protein (StAR-related lipid transfer protein 3) (StARD3) (START domain-containing protein 3) (CAB1 protein), transcript variant 5 (LOC491024), mRNA Length = 1393 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caccactgccatggcctcct 79 |||||||||||||||||||| Sbjct: 798 caccactgccatggcctcct 779
>ref|XM_858684.1| PREDICTED: Canis familiaris similar to MLN 64 protein (StAR-related lipid transfer protein 3) (StARD3) (START domain-containing protein 3) (CAB1 protein), transcript variant 4 (LOC491024), mRNA Length = 1342 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caccactgccatggcctcct 79 |||||||||||||||||||| Sbjct: 747 caccactgccatggcctcct 728
>ref|XM_858659.1| PREDICTED: Canis familiaris similar to MLN 64 protein (StAR-related lipid transfer protein 3) (StARD3) (START domain-containing protein 3) (CAB1 protein), transcript variant 3 (LOC491024), mRNA Length = 1510 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caccactgccatggcctcct 79 |||||||||||||||||||| Sbjct: 915 caccactgccatggcctcct 896
>gb|BC036767.1| Homo sapiens RIB43A domain with coiled-coils 1, transcript variant 1, mRNA (cDNA clone MGC:46233 IMAGE:5744127), complete cds Length = 1500 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gcaggagcaacagcaagcca 528 |||||||||||||||||||| Sbjct: 657 gcaggagcaacagcaagcca 676
>gb|AC144502.5| Medicago truncatula clone mth2-5p10, complete sequence Length = 91507 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 tccctctgtctctctccttc 507 |||||||||||||||||||| Sbjct: 29318 tccctctgtctctctccttc 29299
>emb|Z97054.1|HS339A18 Human DNA sequence from clone RP3-339A18 on chromosome Xp11.1-11.4 Contains the 5' end of the SMC1L1 gene for SMC1 structural maintenance of chromosomes 1-like 1 (yeast), a novel RIB43A domain containing protein (FLJ32783), the HADH2 gene for hydroxyacyl-Coenzyme A dehydrogenase type II, a novel pseudogene (FLJ20516), the 3' end of the gene for upstream regulatory element binding protein 1 (UREB1), a novel gene and three CpG islands, complete sequence Length = 132805 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gcaggagcaacagcaagcca 528 |||||||||||||||||||| Sbjct: 24776 gcaggagcaacagcaagcca 24795
>emb|AL390252.9| Human DNA sequence from clone RP11-297O4 on chromosome 1 Contains the CELSR2 gene for cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila), the gene for differential display and activated by p53 (DDA3), the gene for novel protein similar to Myosin-binding protein H (MyBP-H) (H-protein) (LOC343263), the SORT1 gene for sortilin 1 and the 3' end of the PSMA5 gene for proteasome (prosome, macropain) subunit, alpha type, 5, complete sequence Length = 169241 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 cctcctcctgtagctgctgccgcc 351 |||||||||| ||||||||||||| Sbjct: 151080 cctcctcctgcagctgctgccgcc 151057
>emb|AL158053.14| Human DNA sequence from clone RP11-156J23 on chromosome Xq21.2-21.33 Contains a discs, large homolog 7 (Drosophila) (DLG7) pseudogene, complete sequence Length = 177722 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 tccctctgtctctctccttc 507 |||||||||||||||||||| Sbjct: 107520 tccctctgtctctctccttc 107539
>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence Length = 167588 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccatctcccatggctttggt 59 |||||||||||||||||||| Sbjct: 6825 ccatctcccatggctttggt 6806
>ref|XM_962954.1| PREDICTED: Tribolium castaneum similar to CG5486-PA, isoform A (LOC656421), mRNA Length = 3924 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cagctcctcgcgcccatctc 46 |||||||||||||||||||| Sbjct: 3768 cagctcctcgcgcccatctc 3749
>gb|AC069504.7| Homo sapiens 3 BAC RP11-263A24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 39624 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 cctcctcctgtagctgctgc 347 |||||||||||||||||||| Sbjct: 17865 cctcctcctgtagctgctgc 17846
>emb|BX294024.1|NC20H10 Neurospora crassa DNA linkage group V Cosmid contig 20H10 Length = 96283 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 cccgtttcacctctctctca 478 |||||||||||||||||||| Sbjct: 61151 cccgtttcacctctctctca 61132
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 catcggcctcatcggctgga 243 |||||||||||||||||||| Sbjct: 149680 catcggcctcatcggctgga 149661
>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0011G21, from chromosome 3, complete sequence Length = 142401 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ccatctcccatggctttggt 59 |||||||||||||||||||| Sbjct: 39651 ccatctcccatggctttggt 39670
>emb|AL806529.6| Mouse DNA sequence from clone RP23-234M1 on chromosome 11 Contains the 3' end of the Nxn gene for nucleoredoxin, complete sequence Length = 74841 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 catcccctgcatccctcctc 451 |||||||||||||||||||| Sbjct: 17274 catcccctgcatccctcctc 17255
>gb|AC183530.3| Pan troglodytes BAC clone CH251-653K11 from chromosome 1, complete sequence Length = 198127 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 cctcctcctgtagctgctgccgcc 351 |||||||||| ||||||||||||| Sbjct: 95580 cctcctcctgcagctgctgccgcc 95557
>emb|X98248.2|HSGP95SOR H.sapiens mRNA for sortilin Length = 4975 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 cctcctcctgtagctgctgccgcc 351 |||||||||| ||||||||||||| Sbjct: 123 cctcctcctgcagctgctgccgcc 146
>dbj|AK057345.1| Homo sapiens cDNA FLJ32783 fis, clone TESTI2002223, weakly similar to Chlamydomonas reinhardtii strain 1132D- flagellar protofilament ribbon protein (RIB43a) mRNA Length = 1949 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gcaggagcaacagcaagcca 528 |||||||||||||||||||| Sbjct: 708 gcaggagcaacagcaagcca 727
>gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, complete sequence Length = 180202 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tcccatggctttggtcacca 64 |||||||||||||||||||| Sbjct: 127092 tcccatggctttggtcacca 127111
>gb|AC019294.7| Homo sapiens chromosome , clone RP11-24M17, complete sequence Length = 164310 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tcccatggctttggtcacca 64 |||||||||||||||||||| Sbjct: 39291 tcccatggctttggtcacca 39310
>gb|DQ314862.1| Streptomyces hygroscopicus strain NRRL 2388 hygromycin A biosynthetic gene cluster, complete sequence Length = 39151 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 cgcgccgtacttcaccacga 198 |||||||||||||||||||| Sbjct: 1651 cgcgccgtacttcaccacga 1670
>gb|DP000034.1| Atelerix albiventris target 116 genomic scaffold Length = 230282 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 tccctctgtctctctccttc 507 |||||||||||||||||||| Sbjct: 210431 tccctctgtctctctccttc 210412
>dbj|AB169289.1| Macaca fascicularis testis cDNA, clone: QtsA-18671, similar to human hypothetical protein FLJ32783 (FLJ32783), mRNA, RefSeq: NM_144968.1 Length = 1625 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gcaggagcaacagcaagcca 528 |||||||||||||||||||| Sbjct: 823 gcaggagcaacagcaagcca 842
>gb|BC102305.1| Bos taurus vacuolar proton-ATPase, subunit D; V-ATPase, subunit D, mRNA (cDNA clone MGC:127302 IMAGE:7949023), complete cds Length = 1579 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 351 ccgagagcctcgcccaacgccaccgggc 378 ||||| || ||||||||||||||||||| Sbjct: 1078 ccgagtgcatcgcccaacgccaccgggc 1105
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ccatctcccatggctttggt 59 |||||||||||||||||||| Sbjct: 11123057 ccatctcccatggctttggt 11123076
>gb|AC157658.2| Mus musculus BAC clone RP23-331E4 from chromosome 12, complete sequence Length = 203717 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 ttgttcatccctctgtctct 500 |||||||||||||||||||| Sbjct: 102675 ttgttcatccctctgtctct 102694
>gb|AC091114.11| Homo sapiens chromosome 8, clone RP11-136O12, complete sequence Length = 182291 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 tccctctgtctctctccttc 507 |||||||||||||||||||| Sbjct: 120808 tccctctgtctctctccttc 120789
>gb|AC154663.2| Mus musculus BAC clone RP24-283H12 from 16, complete sequence Length = 177341 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 tccctctgtctctctccttc 507 |||||||||||||||||||| Sbjct: 70740 tccctctgtctctctccttc 70721
>dbj|AP003096.3| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2007L18, complete sequence Length = 174605 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 tccctctgtctctctccttc 507 |||||||||||||||||||| Sbjct: 103540 tccctctgtctctctccttc 103559
>gb|AC121101.8| Mus musculus chromosome 8, clone RP24-511A8, complete sequence Length = 158957 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 gcctcggagctgctcctccc 304 |||||||||||||||||||| Sbjct: 84792 gcctcggagctgctcctccc 84773
>gb|AC160647.1| Gallus gallus BAC clone CH261-14N23 from chromosome unknown, complete sequence Length = 237526 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ctttggtcaccactgccatg 72 |||||||||||||||||||| Sbjct: 234869 ctttggtcaccactgccatg 234850
>gb|BC023542.1| Homo sapiens sortilin 1, mRNA (cDNA clone MGC:15104 IMAGE:4123836), complete cds Length = 2679 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 cctcctcctgtagctgctgccgcc 351 |||||||||| ||||||||||||| Sbjct: 112 cctcctcctgcagctgctgccgcc 135
>gb|J04204.1|BOV39KD Bos taurus 32 kd acessory protein mRNA, complete cds Length = 1538 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 351 ccgagagcctcgcccaacgccaccgggc 378 ||||| || ||||||||||||||||||| Sbjct: 1052 ccgagtgcatcgcccaacgccaccgggc 1079
>gb|AC104319.3| Homo sapiens chromosome 8 clone RP11-407G9 map 8q24.2, complete sequence Length = 216749 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 tccctctgtctctctccttc 507 |||||||||||||||||||| Sbjct: 150919 tccctctgtctctctccttc 150900
>dbj|AP001788.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-259D17, complete sequence Length = 188250 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 tccctctgtctctctccttc 507 |||||||||||||||||||| Sbjct: 168589 tccctctgtctctctccttc 168608 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,804,391 Number of Sequences: 3902068 Number of extensions: 4804391 Number of successful extensions: 106182 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105910 Number of HSP's gapped (non-prelim): 272 length of query: 610 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 587 effective length of database: 17,143,297,704 effective search space: 10063115752248 effective search space used: 10063115752248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)